Water Microbiology

水微生物学
  • 文章类型: Journal Article
    人类诺如病毒(HuNoV)是病毒性胃肠炎的全球主要原因,每年都会导致许多疾病和疾病。然而,传统的细胞培养系统不能支持传染性HuNoV的培养,使其在食品和水基质中的检测和研究特别具有挑战性。HuNoV研究的最新进展,包括诸如人类肠道类肠(HIE)和斑马鱼幼虫/胚胎等模型的出现,显著增强了我们对HuNoV发病机制的理解。这篇综述概述了目前用于食品和水中HuNoV检测的方法,以及它们的相关限制。此外,它探讨了HIE和斑马鱼幼虫/胚胎模型在检测食物和水基质中的感染性HuNoV中的潜在应用。最后,这篇综述还强调需要进一步优化和探索这些模型和检测方法,以提高我们对HuNoV及其在不同矩阵中的存在的理解,最终有助于改善干预策略和公共卫生结果。
    Human norovirus (HuNoV) is a leading global cause of viral gastroenteritis, contributing to numerous outbreaks and illnesses annually. However, conventional cell culture systems cannot support the cultivation of infectious HuNoV, making its detection and study in food and water matrices particularly challenging. Recent advancements in HuNoV research, including the emergence of models such as human intestinal enteroids (HIEs) and zebrafish larvae/embryo, have significantly enhanced our understanding of HuNoV pathogenesis. This review provides an overview of current methods employed for HuNoV detection in food and water, along with their associated limitations. Furthermore, it explores the potential applications of the HIE and zebrafish larvae/embryo models in detecting infectious HuNoV within food and water matrices. Finally, this review also highlights the need for further optimization and exploration of these models and detection methods to improve our understanding of HuNoV and its presence in different matrices, ultimately contributing to improved intervention strategies and public health outcomes.
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  • 文章类型: Journal Article
    确定环境水中细菌病原体和抗菌素耐药性(AMR)的标准化评估方法可以提高监测和收集数据的质量,支持全球监测工作,加强对环境水源的认识。我们进行了系统综述,以收集和综合现有文献,确定了评估水中细菌粪便指标和病原体的患病率和丰度的方法,以监测细菌病原体和AMR。经过质量筛选,从15个数据库中确定了175种独特的出版物,并提取数据进行分析。这篇综述确定了最常见和最可靠的方法,和用于从地表水源分离目标生物的培养基,总结了方法论趋势,并认识到知识差距。在美国和全球建立监测水中细菌病原体和AMR的标准化方法时,本综述中提供的信息将很有用。
    Identification of methods for the standardized assessment of bacterial pathogens and antimicrobial resistance (AMR) in environmental water can improve the quality of monitoring and data collected, support global surveillance efforts, and enhance the understanding of environmental water sources. We conducted a systematic review to assemble and synthesize available literature that identified methods for assessment of prevalence and abundance of bacterial fecal indicators and pathogens in water for the purposes of monitoring bacterial pathogens and AMR. After screening for quality, 175 unique publications were identified from 15 databases, and data were extracted for analysis. This review identifies the most common and robust methods, and media used to isolate target organisms from surface water sources, summarizes methodological trends, and recognizes knowledge gaps. The information presented in this review will be useful when establishing standardized methods for monitoring bacterial pathogens and AMR in water in the United States and globally.
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  • 文章类型: Journal Article
    水在所有生物过程中的重要性是不可否认的。确保获得清洁和安全的饮用水对于维持可持续的水资源至关重要。为了详细说明,饮用质量不足的水可能会对人类健康产生影响。此外,根据自来水水质的不稳定性,在全球范围内,瓶装水的消费率每天都在增加。虽然大多数人认为瓶装水是安全的,它也可能受到微生物或化学污染的污染,这会增加患病的风险。在过去的几十年里,用于分析瓶装水污染的几种常规分析工具。另一方面,一些限制限制了它们在这一领域的应用。因此,生物传感器,作为新兴的分析方法,在检测瓶装水的微生物和化学污染方面引起了极大的关注。生物传感器享有多种设施,包括选择性,负担能力,和敏感性。在这次审查中,重点介绍了用于分析瓶装水污染的开发生物传感器,以及工作策略,研究的利弊。还研究了挑战和前景。
    The importance of water in all biological processes is undeniable. Ensuring access to clean and safe drinking water is crucial for maintaining sustainable water resources. To elaborate, the consumption of water of inadequate quality can have a repercussion on human health. Furthermore, according to the instability of tap water quality, the consumption rate of bottled water is increasing every day at the global level. Although most people believe bottled water is safe, it can also be contaminated by microbiological or chemical pollution, which can increase the risk of disease. Over the last decades, several conventional analytical tools applied to analyze the contamination of bottled water. On the other hand, some limitations restrict their application in this field. Therefore, biosensors, as emerging analytical method, attract tremendous attention for detection both microbial and chemical contamination of bottled water. Biosensors enjoy several facilities including selectivity, affordability, and sensitivity. In this review, the developed biosensors for analyzing contamination of bottled water were highlighted, as along with working strategies, pros and cons of studies. Challenges and prospects were also examined.
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  • 文章类型: Journal Article
    腺病毒(AdV)在医学和环境方面都具有重大影响。这项研究的目的是调查不同类型的水,如未经处理和处理的废水,地表水,地下水饮用水,和其他水基质。本荟萃分析共纳入239篇文献。在世界范围内的各种水域中检测到腺病毒。发现水中的总体患病率为59.2%,未经处理的废水(83.1%)和经处理的废水(75.3%)的患病率最高,其次是“其他水基质”(53.4%),地表水(49.5%)饮用水(22.7%),和地下水(18.5%)。大多数研究没有评估病毒的生存能力,导致水污染和风险之间的薄弱环节。在水环境中发现了人和动物的AdV。研究结果表明,水,包括饮用水,在发达经济体和发展中经济体都可能是AdV传播的重要途径。
    Adenoviruses (AdVs) have a significant impact in both medical and environmental contexts. The objective of this study was to investigate the prevalence of AdV in different water types, such as untreated and treated wastewater, surface water, groundwater, drinking water, and other water matrices. A total of 239 articles were included in this meta-analysis. Adenoviruses were detected in various waters worldwide. The overall prevalence in water was found to be 59.2%, with the highest prevalence in untreated wastewater (83.1%) and treated wastewater (75.3%), followed by \"other water matrices\" (53.4%), surface water (49.5%) drinking water (22.7%), and groundwater (18.5%). Most of the studies did not assess the viability of the viruses, leading to weak links between water contamination and risk. Both human and animal AdV were found in water environments. The findings suggest that water, including drinking water, could be a significant route of AdV transmission in both developed and developing economies.
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  • 文章类型: Systematic Review
    抗菌素耐药性是十多年来一个严重而复杂的问题。尽管对抗菌素耐药性(AMR)的研究主要集中在临床和动物样本上,这对于治疗至关重要。水生环境中的AMR情况可能会有所不同,并且根据地理区域而具有复杂的模式。因此,这项研究旨在研究有关现状的最新文献,并确定淡水AMR研究中的差距,海水,和东南亚的废水。PubMed,Scopus,我们在ScienceDirect数据库中搜索了2013年1月至2023年6月发表的相关出版物,重点关注水源中的抗菌素耐药性细菌(ARB)和抗菌素耐药性基因(ARGs).根据纳入标准,最终筛查包括41项研究,使用科恩的互考者kappa评估为0.866,具有可接受的一致性。这项审查发现,在41项研究中,有23项研究调查了淡水而不是海水和废水中的ARG和ARB水库,经常发现大肠杆菌是通过表型和基因型方法进行AMR检测的主要指标。不同的ARG,比如blaTEM,sul1和tetA基因,被发现在废水中很高的患病率,淡水,和海水。现有证据强调了废水管理和持续水监测在防止AMR传播和加强有效缓解战略方面的重要性。这一审查可能有利于更新当前的证据,并为传播ARB和ARG提供一个框架,特别是特定地区的水源。未来的AMR研究应包括来自各种水系统的样品,比如饮用水或海水,生成上下文适当的结果。前瞻性工作需要有关标准检测方法的有力证据,以提出切实可行的政策和警报,以开发微生物源跟踪和识别水生环境标记中特定污染指标的来源。
    Antimicrobial resistance has been a serious and complex issue for over a decade. Although research on antimicrobial resistance (AMR) has mainly focused on clinical and animal samples as essential for treatment, the AMR situation in aquatic environments may vary and have complicated patterns according to geographical area. Therefore, this study aimed to examine recent literature on the current situation and identify gaps in the AMR research on freshwater, seawater, and wastewater in Southeast Asia. The PubMed, Scopus, and ScienceDirect databases were searched for relevant publications published from January 2013 to June 2023 that focused on antimicrobial resistance bacteria (ARB) and antimicrobial resistance genes (ARGs) among water sources. Based on the inclusion criteria, the final screening included 41 studies, with acceptable agreement assessed using Cohen\'s inter-examiner kappa equal to 0.866. This review found that 23 out of 41 included studies investigated ARGs and ARB reservoirs in freshwater rather than in seawater and wastewater, and it frequently found that Escherichia coli was a predominant indicator in AMR detection conducted by both phenotypic and genotypic methods. Different ARGs, such as blaTEM, sul1, and tetA genes, were found to be at a high prevalence in wastewater, freshwater, and seawater. Existing evidence highlights the importance of wastewater management and constant water monitoring in preventing AMR dissemination and strengthening effective mitigation strategies. This review may be beneficial for updating current evidence and providing a framework for spreading ARB and ARGs, particularly region-specific water sources. Future AMR research should include samples from various water systems, such as drinking water or seawater, to generate contextually appropriate results. Robust evidence regarding standard detection methods is required for prospective-era work to raise practical policies and alerts for developing microbial source tracking and identifying sources of contamination-specific indicators in aquatic environment markers.
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  • 文章类型: Journal Article
    在这次审查中,我们描述了关于生物矿物浴池水质管理的最新技术,并将这些与传统游泳池进行比较。生物矿物池使用机械过滤的组合,生物过滤,和紫外线处理对水进行消毒。测试池中的研究表明,生物过滤在处理有机污染方面可有效保持水质。关于生物风险,生物矿物池依靠紫外线处理来降解细菌。与化学消毒剂处理不同,紫外线消毒不会失去其有效性在高流量的情况下在游泳池。然而,因为只有过滤系统吸收的水被消毒,池子里的水必须全部过滤。如果泳池有死区,它的水没有消毒,有局部病原体发展的风险。随着生物矿物池的发展在欧洲蔓延,立法逐渐跟进。测量的健康参数从一个国家到另一个国家略有不同,但有常数:大肠杆菌的测量,肠球菌,还有铜绿假单胞菌.就生物游泳池而言,整个欧洲的监管同质性不存在。从这些比较来看,奥地利立法将水质分为4类,从“优良”到“差”,代表了将健康和安全与可能发生故障的迹象相结合的立法。接下来,提出了对三个生物矿物池真实地点的研究。看来无论游泳池的类型是什么,在与粪便污染和外部污染相关的风险方面,生物矿物过滤可以达到与氯化游泳池相当的性能。另一方面,当频率很高时,就像用于饮水的小水池一样,监测浴间污染的风险,如金黄色葡萄球菌的存在所示,揭示了一个反复出现的问题。知道该参数在自然环境中的沐浴水域中未进行评估,并且许多研究表明,始终可以检测到金黄色葡萄球菌,即使在海滩上,我们提出了三个阈值的定义:即,0CFU/100mL(Wallonia中的阈值)用于优质水,质量非常好的水低于20CFU/100mL(法国的阈值),少于50CFU/100mL(通过简单的浸入浴者的贡献),以获得优质的水,和超过50CFU/100毫升的劣质水。因此,该文件可以转换为操作员使用和管理生物矿物浴的手册。
    In this review, we depict the state of the art concerning the water quality management of bio-mineral bathing pools, and compare these to traditional swimming pools. Bio-mineral pools use a combination of mechanic filtration, bio-filtration, and UV-treatment to disinfect the water. Studies in test tanks have shown that bio-filtration is effective in maintaining the water quality with regard to the treatment of organic pollution. Concerning biological risks, the bio-mineral pool relies on UV-treatment to degrade bacteria. Unlike chemical disinfectant treatments, UV disinfection does not lose its effectiveness in the event of high traffic in the pool. However, as only the water taken up by the filtration system is disinfected, it is essential that all the water in the pool is filtered. If the pool has a dead zone, its water is not disinfected and there is a risk of localized pathogen development. As the development of bio-mineral pools spreads in Europe, legislation gradually follows. The health parameters measured differ slightly from one country to another, but there are constants: the measurement of Escherichia coli, Enterococci, and Pseudomonas aeruginosa. In terms of biological swimming pools, regulatory homogeneity across Europe does not exist. From these comparisons, Austrian legislation segmenting water quality into 4 categories ranging from \"excellent\" to \"poor\" represents legislation that combines health and safety with indications of possible malfunctions. Next, a study of three real sites of bio-mineral pools is presented. It appears that whatever the type of pool, bio-mineral filtration makes it possible to achieve performances comparable to those encountered in chlorinated swimming pools concerning the risks associated with fecal contamination and external pollution. On the other hand, when frequentation is high, as is the case in small pools used for aquafitness, monitoring the risks of inter-bather contamination, as illustrated by the presence of Staphylococcus aureus, reveals a recurring problem. Knowing that this parameter is not evaluated in bathing waters in the natural environment and that numerous studies show that Staphyloccocus aureus are always detected, even on beaches, we propose the definition of three thresholds: i.e., 0 CFU/100 mL (threshold value in Wallonia) for water of excellent quality, less than 20 CFU/100 mL (threshold value in France) for water of very good quality, less than 50 CFU/100 mL (contribution of bathers by simple immersion) for good quality water, and more than 50 CFU/100 mL for poor quality water. This document could therefore be converted into a manual for operators on the use and management of bio-mineral baths.
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  • 文章类型: Journal Article
    由于许多水传播疾病是由人类病原病毒引起的,饮用水(DW)和DW源的病毒监测对公共卫生至关重要。因此,这篇综述的目的是描述DW和DW来源中人类致病病毒的发生;还报道了两种被提议作为人类粪便污染新指标的病毒(胡椒轻度斑驳病毒和烟草花叶病毒)的发生。这项研究的重点是在用于DW生产(SW-D)的地表水中使用分子方法评估病毒发生的文章,用于DW生产的地下水(GW-D),DW和瓶装DW(BW)。分析了过去10年中发表的1544项研究,最终包括79个。在考虑检测方法时,过滤是最常见的浓缩技术,而定量聚合酶链反应是最常见的定量技术。关于SW-D中的病毒发生,GW-D,而DW,据报道,腺病毒阳性样本的百分比很高,多瘤病毒和胡椒轻度斑驳病毒。病毒基因组经常在SW-D中检测到,在GW-D中很少检测到。表明GW-D可能是安全的DW源。在DW中也检测到病毒基因组,可能对人类健康造成威胁。阳性样本的百分比最低的是在欧洲,而最高的是在亚洲和南美。只有三篇文章评估了BW中的病毒发生。这篇评论强调了方法标准化的缺乏和立法更新的必要性。
    Since many waterborne diseases are caused by human pathogenic viruses, virus monitoring of drinking water (DW) and DW sources is crucial for public health. Therefore, the aim of this review was to describe the occurrence of human pathogenic viruses in DW and DW sources; the occurrence of two viruses proposed as novel indicators of human faecal contamination (Pepper mild mottle virus and Tobacco mosaic virus) was also reported. This research was focused on articles that assessed viral occurrence using molecular methods in the surface water used for DW production (SW-D), groundwater used for DW production (GW-D), DW and bottled-DW (BW). A total of 1544 studies published in the last 10 years were analysed, and 79 were ultimately included. In considering the detection methods, filtration is the most common concentration technique, while quantitative polymerase chain reaction is the most common quantification technique. Regarding virus occurrence in SW-D, GW-D, and DW, high percentages of positive samples were reported for adenovirus, polyomavirus and Pepper mild mottle virus. Viral genomes were frequently detected in SW-D and rarely in GW-D, suggesting that GW-D may be a safe DW source. Viral genomes were also detected in DW, posing a possible threat to human health. The lowest percentages of positive samples were found in Europe, while the highest were found in Asia and South America. Only three articles assessed viral occurrence in BW. This review highlights the lack of method standardization and the need for legislation updates.
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  • 文章类型: Journal Article
    骨髓移植和血液肿瘤患者由于水传播的病原体而面临医疗保健相关感染的风险。我们对2000-2022年血液肿瘤患者的水传播暴发进行了叙述性回顾。搜索的数据库包括Pubmed、DARE和CDSR由两名作者承担。我们分析了所涉及的生物,确定感染源并实施感染预防和控制策略。最常见的病原体是铜绿假单胞菌,非结核分枝杆菌和嗜肺军团菌。血流感染是最常见的临床表现。大多数事件采用多式联运策略来实现控制,解决水源和传播途径。这篇综述强调了水传播病原体对血液肿瘤患者的风险,并讨论了未来的预防策略以及英国对血液肿瘤单位的新指南的要求。
    Bone marrow transplant and haemato-oncology patients are at risk of healthcare-associated infections due to waterborne pathogens. We undertook a narrative review of waterborne outbreaks in haemato-oncology patients from 2000 to 2022. Databases searched included PubMed, DARE and CDSR, and were undertaken by two authors. We analysed the organisms implicated, sources identified and infection prevention and control strategies implemented. The most commonly implicated pathogens were Pseudomonas aeruginosa, non-tuberculous mycobacteria and Legionella pneumophila. Bloodstream infection was the most common clinical presentation. The majority of incidents employed multi-modal strategies to achieve control, addressing both the water source and routes of transmission. This review highlights the risk to haemato-oncology patients from waterborne pathogens and discusses future preventative strategies and the requirement for new UK guidance for haemato-oncology units.
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  • 文章类型: Journal Article
    住宅建筑通过淋浴头产生的雾化水滴为机会性前提管道病原体(OPPP)暴露提供了独特的条件,水龙头,和浴缸。这篇综述的目的是批判性地评估现有文献,这些文献评估了与住宅管道相关的潜在增强条件对OPPP发生的影响,并指出了知识差距。发现缺乏对该主题的全面研究。确定的主要知识差距包括对住宅管道中OPPP增长的评估,从建筑物入口到固定装置,并评估典型住宅管道设计的影响程度(例如,主干、分支和歧管),组件(例如,阀门和固定装置),热水器类型和温度设置的操作,和常见的管道材料(铜,PEX,和PVC/CPVC)。此外,目前的管道规范要求对OPPP反应的影响尚未通过任何研究进行评估,并且缺乏住宅OPPP风险管理指南。最后,讨论了扩大住宅OPPP扩增知识所需的研究。
    Residential buildings provide unique conditions for opportunistic premise plumbing pathogen (OPPP) exposure via aerosolized water droplets produced by showerheads, faucets, and tubs. The objective of this review was to critically evaluate the existing literature that assessed the impact of potentially enhancing conditions to OPPP occurrence associated with residential plumbing and to point out knowledge gaps. Comprehensive studies on the topic were found to be lacking. Major knowledge gaps identified include the assessment of OPPP growth in the residential plumbing, from building entry to fixtures, and evaluation of the extent of the impact of typical residential plumbing design (e.g., trunk and branch and manifold), components (e.g., valves and fixtures), water heater types and temperature setting of operation, and common pipe materials (copper, PEX, and PVC/CPVC). In addition, impacts of the current plumbing code requirements on OPPP responses have not been assessed by any study and a lack of guidelines for OPPP risk management in residences was identified. Finally, the research required to expand knowledge on OPPP amplification in residences was discussed.
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  • 文章类型: Systematic Review
    使用传统的粪便指示细菌作为生活废水中病原病毒的替代生物已经被注意到是有问题的,因为细菌和病毒的浓度和去除率似乎不相关。在这个意义上,噬菌体(噬菌体)成为潜在的病毒指标,因为它们通常在高浓度的废水中发现,并且可以使用简单的量化,快,低成本的方法。体细胞和F特异性大肠杆菌包括通常用作水质指标的噬菌体组。有两种国际公认的方法来检测和列举水样中的大肠杆菌,国际标准化组织(ISO)和美国环境保护署(USEPA)的方法。两种方法都基于被噬菌体感染的特定细菌宿主菌株的裂解。在此背景下,这篇系统的文献综述旨在收集未经处理和处理过的生活污水中的浓度(二级,生物处理系统和后处理系统),以及通过ISO和USEPA方法获得的体细胞和F特异性大肠杆菌的去除效率,然后比较这两种方法。本研究共考虑了33篇研究论文。结果表明,ISO方法比USEPA方法更常用。在两种方法之间观察到浓度和去除效率方面的一些差异。与ISO方法相比,使用USEPA方法时,活性污泥系统中的体细胞和F特异性大肠杆菌的去除率更高;在其他二级(生物)处理系统中,这仅在F特异性大肠杆菌噬菌体中观察到.使用不同的标准化方法可能会导致在不同条件和位置获得和比较噬菌体数据的困难。建议在WWTP中比较ISO和USEPA方法以及病毒和细菌病原体和指标的未来研究。
    The use of traditional faecal indicator bacteria as surrogate organisms for pathogenic viruses in domestic wastewater has been noted as a problematic as concentrations and removal rates of bacteria and viruses do not seem to correlate. In this sense, bacteriophages (phages) emerge as potential viral indicators, as they are commonly found in wastewater in high levels, and can be quantified using simple, fast, low-cost methods. Somatic and F-specific coliphages comprise groups of phages commonly used as indicators of water quality. There are two internationally recognised methods to detect and enumerate coliphages in water samples, the International Standardization Organization (ISO) and the US Environmental Protection Agency (USEPA) methods. Both methods are based on the lysis of specific bacterial host strains infected by phages. Within this context, this systematic literature review aimed at gathering concentrations in raw and treated domestic wastewater (secondary, biological treatment systems and post-treatment systems), and removal efficiencies of somatic and F-specific coliphages obtained by ISO and USEPA methods, and then compare both methods. A total of 33 research papers were considered in this study. Results showed that the ISO method is more commonly applied than the USEPA method. Some discrepancies in terms of concentrations and removal efficiencies were observed between both methods. Higher removal rates were observed for both somatic and F-specific coliphages in activated sludge systems when using the USEPA method compared to the ISO method; in other secondary (biological) treatment systems, this was observed only for F-specific coliphages. The use of different standardised methods available might lead to difficulties in obtaining and comparing phage data in different conditions and locations. Future research comparing both ISO and USEPA methods as well as viral and bacterial pathogens and indicators in WWTP is recommended.
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