Water Microbiology

水微生物学
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    文章类型: Journal Article
    Water related diseases are of great concern in developing countries like Bangladesh. Every year, many people die due to consumption of unsafe drinking water. In order to protect public health it is compulsory that the accessible drinking water should be maximum quality. In this descriptive observational study 150 samples of bottled water and 150 jar water samples were collected from different shops and restaurants. Each sample were filtered through a membrane filter and then placed on MacConkey agar media for total and fecal coliform count and 0.1 ml of water spread on nutrient agar media for heterotrophic plate count (HPC). Among 150 bottled water samples 11 (7.33%) were culture positive and 92 (61.33%) were culture positive in 150 jar water samples. Out of 150 jar water samples 38 (25.33%) were total coliform and among them 19 (12.67%) were fecal coliform. Among 300 water samples 55 (53.40%) samples showed HPC greater than 500 CFU/ml. A total of 9 bacterial isolates: Escherichia coli, Staphylococcus aureus, Pseudomonas aeruginosa, Acinetobacter spp. CONS, Aeromonas spp., Enterobacter spp., Klebsiella spp. and Citrobacter were found.
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  • 文章类型: Journal Article
    报道了一种家用便携式双层过滤和浓缩装置的工程,该装置带有普通注射器,用于快速分析水样。该装置的核心元件是两个安装的过滤膜,对于各自的功能具有不同的孔径。上层过滤膜用于初步拦截大的干扰杂质(拦截膜),而下滤膜用于收集多个目标病原体(富集膜)进行测定。这种组合可以使被污染的环境水,以地表水为例,通过设备快速过滤,并保留了目标细菌大肠杆菌O157:H7,金黄色葡萄球菌,和单增李斯特菌在下部富集膜上。与表面增强拉曼光谱(SERS)平台集成以解码SERS标签(SERS-TagCVa,SERS-TagR6G,和SERS-TagMB)已经基于抗体介导的免疫识别作用标记在每种富集细菌上,快速分离,浓度,并实现了对大量污染环境水中多种致病菌的检测。结果表明,在30分钟内,湖水中的所有目标细菌可以在101至106CFUmL-1的范围内同时准确地测量,检出限为10.0CFUmL-1,无需任何预培养程序。这项工作突出了简单性,快速,廉价,选择性,以及所构建的同时检测水性样品中多种病原体的方法的鲁棒性。该协议为促进开发不发达国家或发展中国家饮用水和食品安全监管的通用分析工具开辟了新的途径。
    The engineering of a home-made portable double-layer filtration and concentration device with the common syringe for rapid analysis of water samples is reported. The core elements of the device were two installed filtration membranes with different pore sizes for respective functions. The upper filtration membrane was used for preliminary intercepting large interfering impurities (interception membrane), while the lower filtration membrane was used for collecting multiple target pathogens (enrichment membrane) for determination. This combination can make the contaminated environmental water, exemplified by surface water, filtrated quickly through the device and just retained the target bacteria of Escherichia coli O157:H7, Staphylococcus aureus, and Listeria monocytogenes on the lower enrichment membrane. Integrating with surface-enhanced Raman spectra (SERS) platform to decode the SERS-Tags (SERS-TagCVa, SERS-TagR6G, and SERS-TagMB) already labeled on each of the enriched bacteria based the antibody-mediated immuno-recognition effect, fast separation, concentration, and detection of multiple pathogenic bacteria from the bulk of contaminated environmental water were realized. Results show that within 30 min, all target bacteria in the lake water can be simultaneously and accurately measured in the range from 101 to 106 CFU mL-1 with detection limit of 10.0 CFU mL-1 without any pre-culture procedures. This work highlights the simplicity, rapidness, cheapness, selectivity, and the robustness of the constructed method for simultaneous detecting multiple pathogens in aqueous samples. This protocol opens a new avenue for facilitating the development of versatile analytical tools for drinking water and food safety monitoring in underdeveloped or developing countries.
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  • 文章类型: Journal Article
    腹泻是通过粪便-口腔途径传播的主要水传播疾病之一,在印度每年造成超过1000万例病例和1000多人死亡。这项研究严格评估了细菌水质之间的相互联系,即基于多种来源的2017年、2018年和2019年三个大流行前年度的粪便大肠杆菌和腹泻病例。截至2019年8月,约有17%的家庭自来水连接,大多数印度人口依赖原始地下水(GW)和地表水源。为此,使用印度国家水质监测计划的数据,已在地区一级绘制了地表和GW中的粪便大肠杆菌(FC)水平。健康管理信息系统的腹泻数据已用于了解腹泻的每月和地区变化。FC的趋势,腹泻住院病例,和腹泻住院率已经讨论过。分析显示了与这些数据集的可靠性和有用性相关的问题,其中43%的印度地区在研究期间没有报告的FC值。这项研究揭示了腹泻与细菌学水质之间的相互联系存在明显差距,而无法获得颗粒状水质数据是一项重大挑战。
    Diarrhoea is one of the major waterborne diseases spread through the faecal-oral route causing over 10 million cases and over 1,000 deaths per year in India. This study critically evaluates the interlinkage between bacteriological water quality, i.e. faecal coliforms and diarrhoea cases for the three pre-pandemic years 2017, 2018 and 2019 based on multiple sources. With around 17% of households tap water connectivity as of August 2019, the majority of the Indian population depends on raw groundwater (GW) and surface water sources. For this, faecal coliform (FC) levels in surface and GW have been mapped at district levels using data from India\'s National Water Quality Monitoring Programme. Health Management Information System\'s data on diarrhoea have been used to understand the monthly and district-wise variation of diarrhoea. The trends of FC, diarrhoea inpatient cases, and diarrhoea inpatient rates have been discussed. The analysis showed issues associated with the reliability and usefulness of these datasets with 43% of total India districts with no reported FC values for the study period. This study reveals a clear gap in the interlinkage between diarrhoea and bacteriological water quality with the unavailability of granular water quality data as a major challenge.
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  • 文章类型: Journal Article
    高铁酸盐(Fe(VI):HFeO4-/FeO42-),一种有效的氧化剂,由于减少了消毒副产物的产生,因此已被研究为水处理中的替代化学消毒剂。在这项研究中,我们评估了高铁酸钾对各种微生物的消毒能力,包括水性病原体,在不同的pH和水温条件下。我们提供了CT值,高铁酸盐浓度(C)和接触时间(T)的度量,来量化微生物的灭活率。在测试的微生物中,人类腺病毒对高铁酸盐的抗性最低,其次是水细菌,如大肠杆菌和霍乱弧菌,最后,原生动物寄生虫十二指肠贾第鞭毛虫。我们进一步研究了两个pH值(7和8)和两个温度(5和25°C)对微生物失活率的影响,观察到失活率随着较低的pH和较高的温度而增加。除了展示高铁酸盐有效灭活一系列测试微生物的能力,我们提供了高铁酸盐CT表,以方便比较各种消毒方法的有效性。
    Ferrate (Fe(VI): HFeO4- /FeO42-), a potent oxidant, has been investigated as an alternative chemical disinfectant in water treatment due to its reduced production of disinfection by-products. In this study, we assessed the disinfecting ability of potassium ferrate against a variety of microorganisms, including waterborne pathogens, under varying pH and water temperature conditions. We presented CT values, a metric of ferrate concentrations (C) and contact time (T), to quantify microbial inactivation rates. Among the tested microorganisms, human adenovirus was the least resistant to ferrate, followed by waterborne bacteria such as Escherichia coli and Vibrio cholerae, and finally, the protozoan parasite Giardia duodenalis. We further investigated the impact of two pH values (7 and 8) and two temperatures (5 and 25 °C) on microbial inactivation rates, observing that inactivation rates increased with lower pH and higher temperature. In addition to showcasing ferrate\'s capacity to effectively inactivate a range of the tested microorganisms, we offer a ferrate CT table to facilitate the comparison of the effectiveness of various disinfection methods.
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  • 文章类型: Journal Article
    目前用于测试粪便污染的水的方法依赖于粪便指示细菌(FIB;大肠杆菌和肠球菌)的培养,需要24-48小时,这导致采取积极措施的延误,并对公众健康构成风险。因此需要更快速的方法。这里,我们测试了一种快速的,便携式测定(细菌),在30分钟内检测细菌生物标志物内毒素,以量化存在的细菌生物量,评估159个沿海水样,并将结果与FIB的传统培养进行比较。以内毒素风险(ER)单位给出的细菌数据与FIB培养物之间存在显着相关性,可以使用EU沐浴指令值准确区分差,充足或优质的沐浴水。接收器工作特性分析用于确定沿海水样的最佳ER阈值,曲线下面积为0.9176,p值<0.0001。最佳阈值为7,300个ER单位,灵敏度为95.45%,特异性为83.48%。总之,我们已经证明,细菌测定提供了一种快速且易于使用的原位方法来评估沐浴水质。
    Current methods for testing water for faecal contamination rely on the culture of faecal indicator bacteria (FIB; Escherichia coli and Enterococci) that take 24-48 h, which leads to delays in taking proactive measures and poses a risk to public health. More rapid methods are therefore required. Here, we have tested a rapid, portable assay (Bacterisk) that detects the bacterial biomarker endotoxin in 30 min to quantify the bacterial biomass present, to evaluate 159 coastal water samples and to compare the results with the traditional culture of FIB. There was a significant correlation between the Bacterisk data given in endotoxin risk (ER) units and FIB culture that could accurately distinguish between poor and sufficient or good quality bathing water using the EU bathing directive values. Receiver operating characteristic analysis was used to determine the optimal ER threshold for coastal water samples, and the area under the curve was 0.9176 with a p-value of <0.0001. The optimal threshold was 7,300 ER units with a sensitivity of 95.45% and a specificity of 83.48%. In conclusion, we have shown that the Bacterisk assay provides a rapid and easy-to-use in situ method to assess bathing water quality.
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  • 文章类型: Journal Article
    抗生素的滥用和抗生素耐药性(AMR)的出现是水产养殖业关注的问题,因为它导致全球健康风险并影响环境。这项研究分析了与条纹cat鱼(Pangasisanodonhypthormus)和巨型蛇头(Channamicropeltes)相关的前哨细菌的AMR,这两种主要鱼类在柬埔寨的池塘养殖中饲养。从鱼类中回收的分离物的表型和基因型表征,水,沉积物样本揭示了细菌的存在,例如属于Aeromonadaceae科的22种,肠杆菌科,和假单胞菌科。在48个分离株中,鱼气单胞菌(n=2),嗜水气单胞菌(n=2),气单胞菌(n=1),检测到沙门氏菌气单胞菌(n=4)。A.salmonicida和A.hydrophilla是已知的鱼类病原体,在淡水和海水养殖中都存在于世界范围内。抗生素敏感性测试显示,在48个具有较高多重抗生素耐药指数(>0.2)的分离株中,有24个(50%)分离株的抗生素耐药模式。所有肠杆菌科细菌均对环丙沙星敏感。环丙沙星是一种一线抗生素,不建议在水产养殖中使用。因此,必须严格控制其使用。这项研究扩展了我们对柬埔寨水产养殖场AMR状况的了解,这在柬埔寨非常有限。
    The misuse of antibiotics and the emergence of antimicrobial resistance (AMR) is a concern in the aquaculture industry because it contributes to global health risks and impacts the environment. This study analyzed the AMR of sentinel bacteria associated with striped catfish (Pangasisanodon hypophthalmus) and giant snakehead (Channa micropeltes), the two main fish species reared in the pond culture in Cambodia. Phenotypic and genotypic characterization of the recovered isolates from fish, water, and sediment samples revealed the presence of bacteria, such as 22 species belonging to families Aeromonadaceae, Enterobacteriaceae, and Pseudomonadaceae. Among 48 isolates, Aeromonas caviae (n = 2), Aeromonas hydrophila (n = 2), Aeromonas ichthiosmia (n = 1), Aeromonas salmonicida (n = 4) were detected. A. salmonicida and A. hydrophilla are known as fish pathogens that occur worldwide in both fresh and marine water aquaculture. Antibiotic susceptibility testing revealed antibiotic resistance patterns of 24 (50 %) isolates among 48 isolates with higher multiple antibiotic resistance index (> 0.2). All the isolates of Enterobacteriaceae were susceptible to ciprofloxacin. Ciprofloxacin is a frontline antibiotic that is not recommended to use in aquaculture. Therefore, its use has to be strictly controlled. This study expands our knowledge of the AMR status in aquaculture farms which is very limited in Cambodia.
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  • 文章类型: Journal Article
    结论:LAMP测定法广泛用于检测病原体。我们观察到常规和梯度聚合酶链反应(PCR)无法检测到提取的大肠杆菌DNA;实时PCR能够检测到一定的极限(10-8细菌稀释)。同时,LAMP测定可以在更低的浓度(10-14稀释)下检测细菌。使用琼脂糖凝胶电泳和DNA结合染料(PicoGreen)评估LAMP测定的结果,但只有凝胶电泳给出了可靠的结果。因此,我们建议使用基于电泳的扩增子检测来克服基于染料的检测的局限性。我们相信,这种扩增子检测将在筛选饮用水方面大有帮助。
    CONCLUSIONS: LAMP assay is widely used for detecting pathogens. We observed that the conventional and gradient polymerase chain reaction (PCR) could not detect the extracted Escherichia coli DNA; real-time PCR was able to detect up to a certain limit (10-8 bacterial dilution). At the same time, the LAMP assay could detect the bacteria at a much lower concentration (10-14 dilution). The results of the LAMP assay were evaluated using agarose gel electrophoresis and DNA binding dye (PicoGreen), but only gel electrophoresis gave reliable results. Therefore, we propose using electrophoresis-based amplicon detection to overcome the limitations of dye-based detection. We believe that this amplicon detection will go a long way in the screening of potable drinking water.
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  • 文章类型: Journal Article
    背景:牙科单元水线(DUWL)将水输送到牙科单元中的不同手持件。DUWL中的水在封闭系统中循环,它是从容器中取出的。牙科水的质量是相当重要的,因为患者和牙科工作人员经常暴露于由牙科设备产生的水和气溶胶。来自DUWL的输出水可能是牙科保健人员和患者的潜在感染源。
    目的:评估钦奈牙科诊所DUWL中的微生物污染。
    方法:于2019年12月对来自钦奈20个牙科诊所的60个水样进行了体外研究。根据ADA指南从牙科单元的三个不同来源收集水样。评估收集的样品是否存在曲霉,不动杆菌,铜绿假单胞菌,和军团菌采用琼脂平板法。使用SPSS软件版本20对数据进行分析。
    结果:军团菌是最普遍的微生物,在三通注射器中患病率为70%,在洁牙器和旋转器中患病率为50%,其次是铜绿假单胞菌和不动杆菌,在洁牙器和转体中的患病率为10%,在三通注射器中的患病率为10%。
    结论:大多数牙科单元被曲霉污染,军团菌,铜绿假单胞菌和不动杆菌对患者和牙医构成严重威胁。
    BACKGROUND: Dental Unit Water Line (DUWL) deliver water to different handpieces in a dental unit. The water in DUWL circulates in a closed system, where it is taken from a container. The quality of dental water is of considerable importance since patients and dental staff are regularly exposed to water and aerosols generated from dental equipment. Output water from DUWLs may be a potential source of infection for both dental health care personnel and patients.
    OBJECTIVE: To assess the microbial contamination in the DUWL among dental clinics in Chennai.
    METHODS: An in vitro study was conducted on 60 water samples from 20 dental clinics in Chennai in December 2019. Water samples were collected from three different sources of the Dental unit according to ADA guidelines. The collected samples were assessed for the presence of Aspergillus, Acinetobacter, Pseudomonas aeruginosa, and Legionella by agar plate method. The data were analysed using SPSS software version 20.
    RESULTS: Legionella was the most prevalent microorganism with 70% prevalence in a three-way syringe and 50% in scaler and airotor, followed by Pseudomonas aeruginosa and Acinetobacter with 10% prevalence in scaler and airotor and Aspergillus with a prevalence of 10% in the three-way syringe.
    CONCLUSIONS: Most of the dental units were contaminated with Aspergillus, Legionella, Pseudomonas aeruginosa and Acinetobacter which pose a serious threat to the patients as well as the dentists.
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  • 文章类型: Journal Article
    在中尺度涡流中,由于其独特的物理过程,其化学特性和生物组成与周围水中的不同。热核涡流中物理-生物耦合的机制尚不清楚,特别是因为没有研究检查环境因素对细菌和病毒的影响。本研究的目的是研究反气旋温涡对细菌和病毒丰度之间关系的影响,以及病毒活性(病毒生产),在不同的深度。在温暖的漩涡的核心,细菌丰度(0.48至2.82×105细胞mL-1)的波动小于涡流外的细菌丰度(1.12至7.03×105细胞mL-1)。特别是,在涡流中估计有四倍的病毒-细菌丰度比(VBR),在深层叶绿素最大值的下面,比外面的涡流。反气旋的温暖涡流在其中心向下流动,可能会导致病毒在下沉时通过吸附在颗粒状有机物上而直接传播到深海。总的来说,我们的发现为细菌和病毒丰度之间的相互作用以及它们在温暖涡流中的生态机制提供了有价值的见解。
    In mesoscale eddies, the chemical properties and biological composition are different from those in the surrounding water due to their unique physical processes. The mechanism of physical-biological coupling in warm-core eddies is unclear, especially because no studies have examined the effects of environmental factors on bacteria and viruses. The purpose of the present study was to examine the influence of an anticyclonic warm eddy on the relationship between bacterial and viral abundances, as well as viral activity (viral production), at different depths. At the core of the warm eddy, the bacterial abundance (0.48 to 2.82 × 105 cells mL-1) fluctuated less than that outside the eddy (1.12 to 7.03 × 105 cells mL-1). In particular, there was a four-fold higher viral-bacterial abundance ratio (VBR) estimated within the eddy, below the layer of the deep chlorophyll maximum, than outside the eddy. An anticyclonic warm eddy with downwelling at its center may contribute to viruses being transmitted directly into the deep ocean through adsorption on particulate organic matter while sinking. Overall, our findings provide valuable insights into the interaction between bacterial and viral abundances and their ecological mechanisms within a warm eddy.
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  • 文章类型: Journal Article
    气候变化,不可预测的天气模式,干旱正在耗尽全球一些地区的水资源,回收和再利用废水是一种不同目的的策略。为了抵消这一点,欧盟关于水回用的法规为农业灌溉使用再生水设定了最低要求,包括减少人类肠道病毒。在本研究中,几种人类肠道病毒的出现,包括人类诺如病毒基因组I(HuNoVGI),HuNoVGII,和轮状病毒(RV),通过使用(RT)-qPCR方法对进水废水和再生水样品进行监测,以及病毒粪便污染指标。此外,体细胞大肠杆菌的水平也被确定为可培养的病毒指标。为了评估潜在的病毒感染性,对污水样品进行衣壳完整性PMAxx-RT-qPCR方法的优化。60%的再生水样品中存在体细胞噬菌体,表明病毒灭活效率低下。PMAxx-RT-qPCR优化后,66%的样本检测出至少一种肠道病毒呈阳性,浓度范围为2.79至7.30Log10基因组拷贝(gc)/L。总的来说,大多数分析的再生水样品不符合欧盟现行法规,并且含有潜在的感染性病毒颗粒.
    Climate change, unpredictable weather patterns, and droughts are depleting water resources in some parts of the globe, where recycling and reusing wastewater is a strategy for different purposes. To counteract this, the EU regulation for water reuse sets minimum requirements for the use of reclaimed water for agricultural irrigation, including a reduction in human enteric viruses. In the present study, the occurrence of several human enteric viruses, including the human norovirus genogroup I (HuNoV GI), HuNoV GII, and rotavirus (RV), along with viral fecal contamination indicator crAssphage was monitored by using (RT)-qPCR methods on influent wastewater and reclaimed water samples. Moreover, the level of somatic coliphages was also determined as a culturable viral indicator. To assess the potential viral infectivity, an optimization of a capsid integrity PMAxx-RT-qPCR method was performed on sewage samples. Somatic coliphages were present in 60% of the reclaimed water samples, indicating inefficient virus inactivation. Following PMAxx-RT-qPCR optimization, 66% of the samples tested positive for at least one of the analyzed enteric viruses, with concentrations ranging from 2.79 to 7.30 Log10 genome copies (gc)/L. Overall, most of the analyzed reclaimed water samples did not comply with current EU legislation and contained potential infectious viral particles.
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