Aquatic Organisms

水生生物
  • 文章类型: Editorial
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  • 文章类型: Journal Article
    本发明提供了在膜滤器上从生物质中回收全细胞蛋白质提取物的方法。蛋白质提取方法是通过过滤大量水捕获的生物质的理想选择,包括来自海洋环境的海水。蛋白质提取方法包括化学破坏和物理破坏以裂解细胞并释放蛋白质用于随后的元蛋白质组学分析。
    A method for the recovery of whole-cell protein extracts from biomass on membrane filters is provided here. The protein extraction method is ideal for biomass captured by filtration of large water volumes, including seawater from marine environments. The protein extraction method includes both chemical disruption and physical disruption to lyse cells and release protein for subsequent metaproteomic analysis.
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  • 文章类型: Journal Article
    海洋物种正在广泛改变其分布,以响应全球变化,通常预计它们将向北移动并到达更大的深度以达到更低的温度,不受干扰的栖息地。然而,全球变化的局部表现,人为压力,和物种特征可能导致单个物种的意外和变化的反应。在这方面,凯尔特-比斯开大陆架是一个特别有趣的研究系统,因为它在历史上被大量捕捞,发生在两个不同的生物地理省份之间的界面,因此,它的群落由具有不同热偏好的物种组成。在气温迅速变暖和渔业开发密集的背景下,我们调查了93个分类单元(65个Actinopteri,10Elasmobranchii,11头足类,5Malacostraca,和2Bivalvia),从1997年到2020年,每年在一次科学的底拖网调查中进行采样。我们使用了一组11个互补的空间指数来量化分类单元随时间的分布变化。然后,我们探索了分类单元丰度的相对影响,钓鱼压力,当检测到显著的变化时,气候条件对分类单元的分布变化的影响。我们观察到56%的分类单元发生了显着变化。并非所有的类群都会向北转移到更深的地区,正如人们经常期望的那样。确定了两种相反的模式:类群要么向东南方向移动,或者靠近地面和西北。主要解释因素是气候变化(短期和长期温度)和分类单元丰度。捕鱼压力是第三个,但仍然很重要,具有更大商业重要性的分类单元的解释因素。我们的研究强调,分类单元在应对人为干扰的综合作用下表现出复杂的分布变化,并强调需要进行区域研究,以更好地了解生态系统规模的这些响应,以制定更合适的管理计划和政策。
    Marine species are widely shifting their distributions in response to global changes and it is commonly expected they will move northward and to greater depths to reach cooler, less disturbed habitats. However, local manifestations of global changes, anthropogenic pressures, and species characteristics may lead to unanticipated and varied responses by individual species. In this regard, the Celtic-Biscay Shelf is a particularly interesting study system because it has historically been heavily fished and occurs at the interface between two distinct biogeographic provinces, its community thus comprised of species with diverse thermal preferenda. In the context of rapidly warming temperatures and intense fishery exploitation, we investigated the distribution shifts of 93 taxa (65 Actinopteri, 10 Elasmobranchii, 11 Cephalopoda, 5 Malacostraca, and 2 Bivalvia), which were sampled annually from 1997 to 2020 during a scientific bottom trawl survey. We used a set of 11 complementary spatial indices to quantify taxon distribution shifts over time. Then, we explored the relative effect of taxon abundance, fishing pressure, and climatic conditions on taxon\'s distribution shift when a significant shift was detected. We observed that 56% of the taxa significantly shifted. Not all taxa will necessarily shift northward and to deeper areas, as it is often expected. Two opposite patterns were identified: taxa either moving deeper and to the southeast, or moving closer to the surface and to the northwest. The main explanatory factors were climate change (short- and long-term temperatures) and taxon abundance. Fishing pressure was the third, but still significant, explanatory factor of taxa of greater commercial importance. Our research highlights that taxa are displaying complex distribution shifts in response to the combined anthropogenic disturbances and underscores the need to conduct regional studies to better understand these responses at the ecosystem scale to develop more suitable management plans and policies.
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  • 文章类型: Journal Article
    二十多年来,甘蔗面积增加了一倍多,巴西从2000年的480万公顷增加到2018年的1000万公顷。圣保罗州主要负责该国的甘蔗生产,占国民生产的51%。2008年,进行了一项研究,分析了甘蔗种植与水生大型无脊椎动物群落之间的关系,显示了甘蔗对大型无脊椎动物水生动物的影响。本研究旨在收集2008年研究的相同河流中水生大型无脊椎动物群落的实际信息,以与以前进行的研究进行历史比较。选择了八条溪流;四个位于甘蔗种植区域,四个位于保护区。在2018年至2020年之间进行了三个样本。使用D型水网(250μm)收集水生大型无脊椎动物,其中包括浅滩和水池区域,并使用特定的识别键进行识别。历史评估结果显示,与2018年相比,2008年甘蔗种植地区的溪流生态条件更好,这表明环境影响在十年后得到了维持和增加。
    Over two decades, the area with sugarcane has more than doubled, from 4.8 million hectares in 2000 to 10 million in 2018, in Brazil. São Paulo State is mostly responsible for the sugarcane production in the country, accounting for 51% of the national production. In 2008, a study was conducted analysing the relationship between sugarcane cultivation and the aquatic macroinvertebrate community, showing the impacts of sugarcane on the macroinvertebrate aquatic fauna. The present study aims to gather actual information on the aquatic macroinvertebrate community in the same streams studied in 2008, to make a historical comparison with studies previously carried out. Eight streams were selected; four located in areas of sugarcane cultivation and four located in preserved areas. Three samples were carried out between 2018 and 2020. The aquatic macroinvertebrates were collected using a D-frame aquatic net (250 μm) including riffle and pools areas and identified using specific identification keys. The results of the historical assessment showed better ecological conditions of the streams in 2008 when compared to 2018 in areas of sugarcane cultivation, suggesting that the environmental impact was maintained and increased after ten years.
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  • 文章类型: Journal Article
    海洋动物的毒害在全球范围内构成了重大的健康问题,影响沿海地区的当地居民和游客。这篇综述的主要目的是批判性地评估现有的科学文献,以确定由海洋动物引起的毒液的最有效的急救治疗。特别是热水浸泡(HWI)或冰袋治疗(IPT)提供最好的即时护理。这项全面的审查涵盖了广泛的海洋生物,从水母叮咬到黄貂伤。虽然我们的重点主要是HWI和IPT的功效,我们还探讨了冷水处理的作用,因为它与冰袋应用的相关性和相似性。此外,我们研究了文献中提到的其他治疗方法,如药物或醋,并在适用的情况下突出他们的发现。为了提供清晰和结构化的概述,我们在单独的表格中总结了文章。这些表格对进行的研究类型进行了分类,研究的海洋物种,海洋物种的起源地区,以及每一项研究的关键发现。我们对现有证据的分析表明,科学界对HWI或IPT对海洋动物的毒害效果达成了普遍共识。然而,在治疗这些损伤时,考虑所有因素至关重要,因为由于海洋生境的多样性,没有普遍的优越待遇。
    Envenomation by marine animals poses a significant health concern globally, affecting both local residents and tourists in coastal regions. The primary objective of this review is to critically evaluate the existing scientific literature to determine the most effective first-aid treatment for envenomations caused by marine animals, specifically whether hot-water immersion (HWI) or ice-pack treatment (IPT) provides the best immediate care. This comprehensive review covers a wide range of marine envenomations, from jellyfish stings to stingray injuries. While our focus is primarily on the efficacy of HWI and IPT, we also explore the role of cold-water treatment as a result of its relevance and similarity to ice-pack applications. In addition, we examine other treatments mentioned in the literature, such as medications or vinegar, and highlight their findings where applicable. To provide a clear and structured overview, we summarised the articles in separate tables. These tables categorise the type of research conducted, the marine species studied, the region of origin of the marine species, and the key findings of each study. Our analysis of the available evidence indicates a general consensus in the scientific community on the effectiveness of HWI or IPT for envenomation by marine animals. However, when treating those injuries, it is crucial to consider all factors since there is no universally superior treatment due to the diverse nature of marine habitats.
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  • 文章类型: Journal Article
    对来自微藻的藻胆蛋白的不断增长的需求产生了大量的副产物,如提取蛋糕。这些蛋糕富含化妆品市场感兴趣的产品,即游离脂肪酸,特别是多不饱和(PUFA)。在这项工作中,两个蛋糕,一种螺旋藻和一种卟啉藻,使用基于链烷二醇的创新天然疏水性深共熔溶剂(NaDES)进行了有效的评估。最有希望的纳德斯,根据物理化学性质和筛选确定,是烷二醇和脂肪酸的混合物。这些包括1,3-丙二醇和辛酸(1:5,mol/mol)以及1,3-丙二醇和辛酸和癸酸(1:3:1,mol/mol)的混合物。实施了两个提取过程:超声辅助提取和涉及双重不对称离心的创新机械过程。第二个过程导致产生显著富含PUFA的提取物,范围从65到220毫克/克干物质与两个蛋糕。提取物和NaDES在表皮角质形成细胞活力方面表现出良好的安全性(200μg/mL时>80%)。它们对共生和致病性皮肤细菌的影响的研究表明,对金黄色葡萄球菌和表皮葡萄球菌的生存力有显着影响(在200µg/mL时降低>50%),同时保留干燥棒杆菌和痤疮杆菌。这些结果突出了使用基于烷二醇的NaDES使这些副产物增值的潜力,在结合活性载体(NaDES)和生长调节剂提取物的策略中,用于治疗涉及葡萄球菌的皮肤菌群失调。
    The growing demand for phycobiliproteins from microalgae generates a significant volume of by-products, such as extraction cakes. These cakes are enriched with products of interest for the cosmetics market, namely free fatty acids, particularly polyunsaturated (PUFA). In this work, two cakes, one of spirulina and one of Porphyridium cruentum, were valorized using innovative natural hydrophobic deep eutectic solvents (NaDES) based on alkanediols. The most promising NaDES, as determined by physicochemical properties and screening, are mixtures of alkanediols and fatty acids. These include the mixtures of 1,3-propanediol and octanoic acid (1:5, mol/mol) and 1,3-propanediol and octanoic and decanoic acid (1:3:1, mol/mol). Two extractive processes were implemented: ultrasound-assisted extraction and an innovative mechanical process involving dual asymmetric centrifugation. The second process resulted in the production of extracts significantly enriched in PUFA, ranging from 65 to 220 mg/g dry matter with the two cakes. The extracts and NaDES demonstrated good safety with respect to epidermal keratinocyte viability (>80% at 200 µg/mL). The study of their impact on commensal and pathogenic cutaneous bacteria demonstrated significant effects on the viability of Staphylococcus aureus and Staphylococcus epidermidis (>50% decrease at 200 µg/mL) while preserving Corynebacterium xerosis and Cutibacterium acnes. These results highlight the potential of valorizing these co-products using alkanediol-based NaDES, in a strategy combining an active vector (NaDES) and a growth regulator extract, for the management of cutaneous dysbiosis involving staphylococci.
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  • 文章类型: Journal Article
    Talaromyces,一种广泛分布在陆地和海洋环境中的丝状真菌,可以生产各种各样的天然产品,包括生物碱,聚酮,和聚酮-萜类化合物。其中,chrodrimanins代表了一类典型的天然产物。在这项研究中,我们分离出三个以前没有描述过的五酮倍半萜,8,9-epi-chrodrimanins(1-3),连同8种已知化合物(4-11)。使用核磁共振(NMR)和质谱(MS)阐明化合物1-3的结构,而它们的绝对构型是通过X射线晶体学和电子圆二色性(ECD)计算确定的。化合物1-3的生物合成途径以6-羟基mellein开始,并涉及多个阶段的异戊二烯化,环化,氧化,和乙酰化。我们选择了四株胃肠道癌细胞进行活性评估。我们发现化合物3选择性地抑制MKN-45,而化合物1和2对四种细胞系没有表现出显著的抑制活性。这些发现表明,8,9-表-铬甘露苷可以作为支架化合物进行进一步的结构修饰,可能导致胃癌靶向治疗的发展。
    Talaromyces, a filamentous fungus widely distributed across terrestrial and marine environments, can produce a diverse array of natural products, including alkaloids, polyketones, and polyketide-terpenoids. Among these, chrodrimanins represented a typical class of natural products. In this study, we isolated three previously undescribed pentaketide-sesquiterpenes, 8,9-epi-chrodrimanins (1-3), along with eight known compounds (4-11). The structures of compounds 1-3 were elucidated using nuclear magnetic resonance (NMR) and mass spectrometry (MS), while their absolute configurations were determined through X-ray crystallography and electronic circular dichroism (ECD) computations. The biosynthetic pathways of compounds 1-3 initiate with 6-hydroxymellein and involve multiple stages of isoprenylation, cyclization, oxidation, and acetylation. We selected four strains of gastrointestinal cancer cells for activity evaluation. We found that compound 3 selectively inhibited MKN-45, whereas compounds 1 and 2 exhibited no significant inhibitory activity against the four cell lines. These findings suggested that 8,9-epi-chrodrimanins could serve as scaffold compounds for further structural modifications, potentially leading to the development of targeted therapies for gastric cancer.
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  • 文章类型: Journal Article
    环状甘氨酸-脯氨酸(cGP),一种普遍的海洋环状二肽,拥有独特的吡咯烷-2,5-二酮支架,这有助于cGP的化学多样性和广泛的生物活性。来自海洋相关的各种来源,内源性生物,综述了cGP的合成途径和体内外活性。还探讨了cGP的潜在应用。特别是,cGP在调节胰岛素样生长因子-1稳态中的关键作用,增强神经保护作用,描述了在中枢神经系统疾病中改善神经营养功能的方法。还强调了这种内源性环肽在药物开发和医疗保健计划中的潜在作用。这篇评论强调了cGP作为药物发现中具有特殊药物性质和安全性的基本组成部分的重要性。通过阐明CGP的重要价值,这篇综述旨在重新激发人们对海洋药物化学和合成生物学中cGP相关研究的兴趣。
    Cyclic glycine-proline (cGP), a prevalent marine cyclic dipeptide, possesses a distinct pyrrolidine-2,5-dione scaffold, which contributes to the chemical diversity and broad bioactivities of cGP. The diverse sources from marine-related, endogenous biological, and synthetic pathways and the in vitro and in vivo activities of cGP are reviewed. The potential applications for cGP are also explored. In particular, the pivotal roles of cGP in regulating insulin-like growth factor-1 homeostasis, enhancing neuroprotective effects, and improving neurotrophic function in central nervous system diseases are described. The potential roles of this endogenous cyclic peptide in drug development and healthcare initiatives are also highlighted. This review underscores the significance of cGP as a fundamental building block in drug discovery with exceptional drug-like properties and safety. By elucidating the considerable value of cGP, this review aims to reignite interest in cGP-related research within marine medicinal chemistry and synthetic biology.
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  • 文章类型: Journal Article
    对未充分开发的放线菌类群的次生代谢进行生物勘探是发现新化学的多产途径。在这项工作中,我们报告隔离,结构阐明,以及纤维素酶A和B(1和2)的生物活性筛选,从巨藻相关的CellulosimiumfunkeiCT-R177的培养物中获得的两种新型线性肽。这种微生物的宿主,绿藻门,被收集在葡萄牙北部海岸,在一项针对其相关放线菌群落的生物勘探研究范围内,分离菌株CT-R177,分类识别,并筛选抗菌和抗癌化合物的生产。使用LC-HRMS(/MS)分析对该菌株的粗提物进行扩增,揭示了一种推定的新型天然产物,纤维素酶A(1),在质谱引导的分馏后分离。一个额外的模拟,在色谱过程中获得了纤维素酰胺B(2),并进行了化学表征。新型线性肽的化学结构,包括它们的绝对配置,使用HRMS的组合进行了阐述,1D/2DNMR光谱,和Marfey的分析。对纤维素酰胺A(1)进行了一系列生物活性筛选,但没有观察到显著的生物活性。纤维素酰胺代表放线菌属的第一个天然产物家族,不仅展示了探索较少的分类单元的潜力,还展示了与宿主相关的海洋菌株对新化学发现的潜力。
    Bioprospecting the secondary metabolism of underexplored Actinomycetota taxa is a prolific route to uncover novel chemistry. In this work, we report the isolation, structure elucidation, and bioactivity screening of cellulamides A and B (1 and 2), two novel linear peptides obtained from the culture of the macroalga-associated Cellulosimicrobium funkei CT-R177. The host of this microorganism, the Chlorophyta Codium tomentosum, was collected in the northern Portuguese coast and, in the scope of a bioprospecting study focused on its associated actinobacterial community, strain CT-R177 was isolated, taxonomically identified, and screened for the production of antimicrobial and anticancer compounds. Dereplication of a crude extract of this strain using LC-HRMS(/MS) analysis unveiled a putative novel natural product, cellulamide A (1), that was isolated following mass spectrometry-guided fractionation. An additional analog, cellulamide B (2) was obtained during the chromatographic process and chemically characterized. The chemical structures of the novel linear peptides, including their absolute configurations, were elucidated using a combination of HRMS, 1D/2D NMR spectroscopy, and Marfey\'s analysis. Cellulamide A (1) was subjected to a set of bioactivity screenings, but no significant biological activity was observed. The cellulamides represent the first family of natural products reported from the Actinomycetota genus Cellulosimicrobium, showcasing not only the potential of less-explored taxa but also of host-associated marine strains for novel chemistry discovery.
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  • 文章类型: Journal Article
    一种新型纤溶酶,BSFE1是从海洋细菌芽孢杆菌属中分离出来的。S-3685(GenBank编号:KJ023685)在南中国海发现。这种酶,分子量约为42kDa,比活性为736.4U/mg,在pH8.0的磷酸盐缓冲液中,在37°C时表现出最高的活性。纤溶酶在7.5至10.0的pH范围内保持稳定,并在37°C孵育2小时后保留了约76%的活性。该酶在37°C下的Km和Vmax值分别为2.1μM和49.0μmolmin-1mg-1。Na+增强了BSFE1的纤溶活性,Ba2+,K+,Co2+,Mn2+,Al3+,和Cu2+,虽然它被Fe3+抑制,Ca2+,Mg2+,Zn2+,和Fe2+。这些发现表明,本研究中分离的纤溶酶对纤维蛋白具有很强的亲和力。此外,我们纯化的酶显示出溶血栓酶活性。这些特征使BSFE1成为溶栓治疗的有希望的候选药物。总之,从这项研究中获得的结果表明,我们的工作在开发溶栓治疗药物方面具有潜力。
    A novel fibrinolytic enzyme, BSFE1, was isolated from the marine bacterium Bacillus sp. S-3685 (GenBank No.: KJ023685) found in the South China Sea. This enzyme, with a molecular weight of approximately 42 kDa and a specific activity of 736.4 U/mg, exhibited its highest activity at 37 °C in a phosphate buffer at pH 8.0. The fibrinolytic enzyme remained stable over a pH range of 7.5 to 10.0 and retained about 76% of its activity after being incubated at 37 °C for 2 h. The Km and Vmax values of the enzyme at 37 °C were determined to be 2.1 μM and 49.0 μmol min-1 mg-1, respectively. The fibrinolytic activity of BSFE1 was enhanced by Na+, Ba2+, K+, Co2+, Mn2+, Al3+, and Cu2+, while it was inhibited by Fe3+, Ca2+, Mg2+, Zn2+, and Fe2+. These findings indicate that the fibrinolytic enzyme isolated in this study exhibits a strong affinity for fibrin. Moreover, the enzyme we have purified demonstrates thrombolytic enzymatic activity. These characteristics make BSFE1 a promising candidate for thrombolytic therapy. In conclusion, the results obtained from this study suggest that our work holds potential in the development of agents for thrombolytic treatment.
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