antimicrobial use

抗菌药物的使用
  • 文章类型: Journal Article
    在过去的十年中,荷兰养猪业中抗菌药物的使用减少了70%以上。然而,仍有相当数量的养猪场未能将其抗菌药物使用量(AMU)降低到足够低的水平,与大多数其他养猪场相比。因此,我们启动了一项干预研究,目的是减少农场内抗菌药物的使用,该研究招募了45个AMU高的猪场.这些农场接受了为期2年的指导,引入了不同的管理干预措施。在2年的研究期间,断奶仔猪和育肥猪的总AMU分别显着减少了13%和17%。教练的引入以及多种管理干预措施(单因素)与AMU的减少有关。在教练和个人干预相互调整后,教练和AMU之间的联系变得相当薄弱,表明指导和干预是相互关联的,具体干预解释了AMU的减少。总之,在这项研究中观察到教练效应,通过具体干预措施对AMU产生影响。需要更多的见解,关于教练对农民管理团队的影响的作用和影响,兽医和(饲料)顾问,和实施的干预措施。
    The use of antimicrobials in the pig sector in the Netherlands has been reduced by more than 70% over the last decade. However, there is still a considerable number of pig farms that have not been able to lower their antimicrobial usage (AMU) to a sufficiently low level, comparable to the majority of the other pig farms. Therefore, an intervention study was initiated to lower on-farm antimicrobial use in which 45 pig farms with high AMU were recruited. These farms were coached over a period of 2 years whereby different management interventions were introduced. During the 2-year study period a significant reduction of 13 and 17% in total AMU was seen in weaned piglets and fattening pigs respectively. The introduction of coaching as well as multiple management interventions were (univariably) associated with the decrease in AMU. After mutual adjustment of coaching and individual interventions, the association between coaching and AMU became substantially weaker, indicating that coaching and interventions were interrelated and specific interventions explained the reduction in AMU. In conclusion, a coaching effect was observed in this study, with an effect on AMU through specific interventions. More insights are needed regarding the role and effects of coaching on the influence on the management team comprising the farmer, veterinarian and (feed) advisor, and interventions implemented.
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  • 文章类型: Journal Article
    这项研究评估了首次治疗牛呼吸道疾病(BRD)的风险,并检测了鼻咽细菌(溶血曼海姆,多杀性巴氏杆菌,和Somni嗜血杆菌)以及在早期喂养期的两个时间点的抗生素敏感性(C/S)的相应可能性。在小腿水平和笔级评估了C/S结果与BRD后期治疗之间的关系。还报告了早期喂养期的小腿水平和笔级C/S结果与BRD治疗后的C/S结果之间的关联。
    拍卖来源,在随后的两年中,将最近断奶的牛牛(n=1,599牛)放置在相邻的饲养场围栏(8×100牛)中。在到达处理时(1DOF)和在使用泰拉霉素或土霉素进行过敏性反应之前,从所有小牛中收集了深鼻咽(DNP)拭子。12天后(13DOF),在首次治疗BRD时。测试所有样品的C/S。
    一些感兴趣的笔级和个体小牛级C/S测量值与治疗时BRD和C/S的未来治疗相关。首次BRD治疗的中位DOF为泰拉霉素过敏反应后24天和土霉素后11天。总的来说,与到达时采样相比,在13DOF采样对BRD和C/S结果的后续治疗模型最适合。在个别小牛中,溶血支原体的回收,P.multocida,或H.somni在13DOF与45DOF内BRD的后续治疗有关。到达时具有四环素或大环内酯耐药性的巴斯德菌和13DOF的Pen水平患病率与BRD治疗中具有抗菌素耐药性(AMR)的细菌检测相关。13DOF时的个体小腿结果也是如此。
    这些研究结果表明,从牛饲养两周后恢复的细菌和AMR结果可以预测未来的BRD风险以及首次BRD治疗时同时出现的抗菌药物敏感性结果。值得注意的是,先前检测的围栏级C/S结果与来自同一围栏的BRD小牛的相应发现之间的关联,提出了潜在的检测策略,以告知饲养场牛的抗菌药物使用方案.
    UNASSIGNED: This study assessed the risk of first treatment for bovine respiratory disease (BRD) given detection of nasopharyngeal bacteria (Mannheimia haemolytica, Pasteurella multocida, and Histophilus somni) and corresponding likelihood of antimicrobial susceptibility (C/S) at two time points during the early feeding period. Relationships between C/S results and later treatment for BRD were evaluated at both the calf-level and pen-level. The association between calf-level and pen-level C/S findings during the early feeding period and subsequent C/S results at BRD treatment were also reported.
    UNASSIGNED: Auction-sourced, recently-weaned beef calves (n = 1,599 steers) were placed in adjacent feedlot pens (8 × 100 calves) in two subsequent years. Deep nasopharyngeal (DNP) swabs were collected from all calves at time of arrival processing (1DOF) and before metaphylaxis administration with either tulathromycin or oxytetracycline, 12 days later (13DOF), and at the time of first treatment for BRD. All samples were tested for C/S.
    UNASSIGNED: Several pen-level and individual calf-level C/S measures of interest were associated with future treatment for BRD and C/S at the time of treatment. The median DOF for first BRD treatment was 24 days following tulathromycin metaphylaxis and 11 days following oxytetracycline. Overall, sampling at 13DOF resulted in the best fit for more models of subsequent treatment for BRD and C/S results at BRD treatment than for sampling at arrival. In individual calves, recovery of M. haemolytica, P. multocida, or H. somni at 13DOF was associated with subsequent treatment for BRD within 45DOF. Pen-level prevalence of Pasteurellacea bacteria with tetracycline or macrolide resistance at arrival and 13DOF were associated with detection of bacteria with antimicrobial resistance (AMR) at BRD treatment, as were individual calf results at 13DOF.
    UNASSIGNED: These findings suggest that the bacteria and AMR outcomes recovered from cattle near two weeks on feed can inform the prediction of future BRD risk and concurrent antimicrobial susceptibility results at time of first BRD treatment. Notably, the associations between pen-level C/S results from previous testing and corresponding findings in calves with BRD from the same pen suggested potential testing strategies to inform antimicrobial use protocols for feedlot cattle.
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  • 文章类型: Journal Article
    背景:缺乏及时、详细的抗生素使用数据限制了门诊抗生素管理工作.在大型综合卫生系统中,跟踪门诊护理场所和急诊科(ED)的抗生素使用情况。方法:这是一项回顾性队列分析,从2019年6月1日至2020年5月31日,比较所有具有ICD-10诊断代码的膀胱炎患者的抗生素处方,中耳炎,咽炎,鼻窦炎,俄亥俄州东北部和佛罗里达州东南部的五个门诊护理部门的上呼吸道感染(URTI):ED,紧急护理(UC),按需远程医疗(TEL),儿科(PED),初级保健(PC)。结果:总共纳入了261,947次相遇(ED:56,766,UC:92,749,TEL:8,783,PED:29,151,PC:74,498),用于治疗膀胱炎(30,932),中耳炎(22,094),咽炎(59,964),鼻窦炎(53,693),或URTI(95,264)。人口为63%的女性,中位年龄为34.2岁[12.8-56.3]。总共有17%的患者记录了青霉素过敏,18%的咽炎患者接受了A组链球菌(GAS)检测。44%的患者服用抗生素(ED:21,746[38%],UC:45,652[49%],TEL:4,622[53%],PED:10,909[37%],PC:33,547[45%];P<0.001)。在65%的遭遇中使用了指南一致的抗生素(ED:14,338[66%],UC:31,532[69%],TEL:3,869[84%],PED:8,212[75%],PC:17,263[51%];P<0.001)。结论:观察到的抗生素和指南一致的抗生素处方率与全国公开的门诊抗生素处方率相似。抗生素处方的可变性证明了有针对性的门诊管理工作的机会。及时的抗生素跟踪工具可以促进门诊抗生素管理活动。
    Background: Lack of access to timely, detailed antibiotic use data has limited ambulatory antibiotic stewardship efforts. Antibiotic utilization is tracked across ambulatory care sites and emergency departments (ED) within a large integrated health system. Methods: This is a retrospective cohort analysis from June 1, 2019 to May 31, 2020 comparing antibiotic prescribing for all patients with ICD-10 diagnosis codes for cystitis, otitis media, pharyngitis, sinusitis, and upper respiratory tract infections (URTIs) among five ambulatory care departments across northeast Ohio and southeast Florida locations: ED, Urgent Care (UC), On-Demand Telehealth (TEL), Pediatrics (PED), and Primary Care (PC). Results: A total of 261,947 encounters were included (ED:56,766, UC:92,749, TEL:8,783, PED:29,151, PC:74,498) for the treatment of cystitis (30,932), otitis media (22,094), pharyngitis (59,964), sinusitis (53,693), or URTI (95,264). The population was 63% female with a median age of 34.2 years [12.8-56.3]. A total of 17% of patients had documented penicillin allergies and 18% of patients with pharyngitis received Group A Streptococcus (GAS) testing. Antibiotics were prescribed in 44% of encounters (ED:21,746 [38%], UC:45,652 [49%], TEL:4,622 [53%], PED:10,909 [37%], PC:33,547 [45%]; P < 0.001). Guideline concordant antibiotics were prescribed in 65% of encounters (ED:14,338 [66%], UC:31,532 [69%], TEL:3,869 [84%], PED:8,212 [75%], PC:17,263 [51%]; P < 0.001). Conclusions: Observed rates of antibiotic and guideline concordant antibiotic prescribing were similar to national published rates of antibiotic prescribing in the ambulatory setting. The variability in antibiotic prescribing demonstrates opportunities for targeted outpatient stewardship efforts. Timely antibiotic tracking tools can facilitate ambulatory antimicrobial stewardship activities.
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  • 文章类型: Journal Article
    我们的中心在秘鲁启动了第一个抗菌药物管理计划。2016年至2023年,经审计的抗菌药物处方比例从60%上升至95%,65%至95%的建议被接受.万古霉素和美罗培南的使用下降了95%和84%,分别。手术预防建议的比例超过90%。
    Our center launched the first antimicrobial stewardship program in Peru. From 2016 to 2023, the proportion of antimicrobial prescriptions audited increased from 60% to 95%, and 65% to 95% of recommendations were accepted. Vancomycin and meropenem use dropped by 95% and 84%, respectively. The proportion of recommendations for surgical prophylaxis exceeded 90%.
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  • 文章类型: Journal Article
    背景:在日本,从2022年8月至2023年3月,一种普通美罗培南产品的供应受到限制。
    目的:确定美罗培南(MEPM)限制的效果。
    方法:我们进行了一项多中心回顾性研究,比较了抗菌药物的使用,菌血症死亡率,以及在MEPM(对照期)限制之前检测到的耐药细菌,从2021年9月到2022年2月,以及在MEPM限制(MEPM供应限制期)之后,从2022年9月到2023年2月,在五个机构中。
    结果:在所有五个机构中,碳青霉烯治疗(DOT)的天数均减少。第四代头孢菌素DOT在所有设施中增加,四个设施的哌拉西林/他唑巴坦DOT增加。MEPM供应限制期的30天和90天死亡率明显高于对照期。此外,MEPM供应限制期的生存时间明显短于对照期.多变量分析表明,MEPM供应限制,年龄>80岁,Pitt菌血症评分≥4,血小板计数<10×104/μL,血清白蛋白水平<2.5g/dL,耐甲氧西林金黄色葡萄球菌血流感染是30天死亡率的独立危险因素。耐碳青霉烯类铜绿假单胞菌和肠杆菌科的检出率在两个时期之间没有显着差异。
    结论:MEPM供应限制减少了碳青霉烯类抗生素的使用,增加了其他广谱抗菌药物的使用,这恶化了菌血症的预后。总的来说,碳青霉烯类抗生素是治疗传染病的重要药物,在药物供应中断等不可预见的情况下难以更换。
    BACKGROUND: In Japan, the supply of one generic meropenem product was restricted from August 2022 to March 2023.
    OBJECTIVE: To determine the effects of meropenem (MEPM) restriction.
    METHODS: We conducted a multicenter retrospective study comparing antimicrobial use, bacteremia mortality, and drug-resistant bacteria detected before the restriction of MEPM (control period), from September 2021 to February 2022, and after the restriction of MEPM (MEPM supply restriction period), from September 2022 to February 2023, in five institutions.
    RESULTS: The number of carbapenem days of therapy (DOTs) were decreased in all five institutions. Fourth-generation cephalosporin DOTs increased in all facilities, and piperacillin/tazobactam DOTs increased in four facilities. The 30-day and 90-day mortality rates were significantly higher during the MEPM supply restriction period than those during the control period. Moreover, survival time was significantly shorter during the MEPM supply restriction period than that during the control period. Multivariable analysis revealed that MEPM supply restriction, age >80 years, Pitt Bacteremia Score ≥4, platelet count <10 × 104/μL, serum albumin level <2.5 g/dL, and methicillin-resistant Staphylococcus aureus bloodstream infection were independent risk factors for 30-day mortality. The detection rates of carbapenem-resistant Pseudomonas aeruginosa and Enterobacteriaceae did not differ significantly between the two periods.
    CONCLUSIONS: MEPM supply restriction decreased the use of carbapenems and increased the use of other broad-spectrum antimicrobial agents, which worsened the prognosis of bacteremia. Overall, carbapenems are important drugs for the treatment of infectious diseases and are difficult to replace in unforeseen situations such as drug supply outages.
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  • 文章类型: Journal Article
    牲畜中的抗菌素使用(AMU)有助于人畜共患病原体的抗菌素耐药性(AMR),如非伤寒沙门氏菌(NTS)。自2009年以来,荷兰为减少牲畜中的AMU做出了巨大努力。
    评估家畜中的AMU与NTS人类分离株中的AMR之间的关联。此外,肉鸡/猪的AMU与NTS肉鸡/猪分离株的AMR之间的关联,以及在肉鸡/猪和人NTS分离物中的AMR之间进行了评估。重点是肠炎沙门氏菌(SE)和鼠伤寒沙门氏菌,包括其单相变体(ST/STM)。
    2008年至2019年在荷兰进行了一项基于国家人口登记的研究。多变量逻辑回归模型被用来评估家畜AMU和NTS抗性比例之间的关联在人类和肉鸡/猪,整体以及每个类别的特定抗菌药物。进行相关性分析以关联人和肉鸡/猪NTS分离株之间的AMR比例。
    对于SE,在肉鸡中使用青霉素与人类分离株对氨苄西林的耐药性之间仅存在显著正相关.对于ST/STM,家畜中的AMU和人类分离株中的AMR之间的大多数关联是显着正的,总体和每个类别的特定抗菌药物,即青霉素-氨苄青霉素,四环素-四环素和磺胺类/甲氧苄啶-磺胺甲恶唑/甲氧苄啶。还观察到肉鸡/猪的AMU和肉鸡/猪ST/STM分离株的AMR之间的显着正相关。但不是在肉鸡/猪和人类AMR水平之间。
    在人和肉鸡/猪ST/STM分离株中,家畜AMU和AMR之间普遍发现了显着关联。然而,混杂因素,如进口肉类和旅游等都值得关注。为了充分理解家畜AMU对人NTS分离株耐药性的影响,加强对NTS的AMR监测势在必行。
    UNASSIGNED: Antimicrobial use (AMU) in livestock contributes to antimicrobial resistance (AMR) among zoonotic pathogens, such as non-typhoid Salmonella (NTS). Since 2009, the Netherlands has made substantial efforts to reduce AMU in livestock.
    UNASSIGNED: To assess the association between AMU in livestock and AMR in NTS human isolates. Additionally, associations between AMU in broilers/pigs and AMR in NTS broiler/pig isolates, and between AMR in broilers/pigs and in human NTS isolates were assessed. The focus was on Salmonella Enteritidis (SE) and Salmonella Typhimurium including its monophasic variant (ST/STM).
    UNASSIGNED: A national population registry-based study was conducted in the Netherlands from 2008 to 2019. Multivariable logistic regression models were used to assess the associations between livestock AMU and NTS resistance proportion in humans and broilers/pigs, overall as well as per class-specific antimicrobials. Correlation analysis was performed to relate AMR proportions between human and broiler/pig NTS isolates.
    UNASSIGNED: For SE, only a positive association between penicillins use in broilers and resistance to ampicillin among human isolates was significant. For ST/STM, most associations between AMU in livestock and AMR among human isolates were significantly positive, overall and per class-specific antimicrobials, namely for penicillins-ampicillin, tetracyclines-tetracycline and sulfonamides/trimethoprim-sulfamethoxazole/trimethoprim. Significantly positive associations between AMU in broilers/pigs and AMR in broiler/pig ST/STM isolates were also observed, but not between broiler/pig and human AMR levels.
    UNASSIGNED: Significant associations were generally found between livestock AMU and AMR in human and broiler/pig ST/STM isolates. However, confounding factors, such as imported meat and travel are of concern. To fully comprehend the impact of livestock AMU on resistance in human NTS isolates, it is imperative to enhance AMR surveillance of NTS.
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  • 文章类型: Journal Article
    这项研究调查了在重症监护病房(ICU)中量化抗菌药物使用的四个指标之间的差异:定义的每日剂量(DDD),规定的每日剂量(PDD),治疗持续时间(DOT),和治疗时间(LOT),并推荐最临床相关的方法。分析了至少接受过一种抗菌药物的患者的回顾性数据。记录不完整或过期的患者被排除在外。与28391/1000PDs的DDD相比,治疗持续时间(24433/1000PDs)和LOTs(12832/1000PDs)低估了抗菌药物的总体消耗量。而PDD(46699/1000PDs)高估了它。比较分析检测到DDD和DOT之间的百分比差异为13.94、23.92和54.80%,DDD和PDD,还有DDD和LOT,指标分别。线性回归显示更强(r2=0.86),中等(r2=0.50),DDD和DOT之间的中度(R2=0.60)相关性,DDD和PDD以及DDD和LOT指标。根据调查结果,结合DOT和DDD是一种更实用的方法来量化医院ICU中的抗菌药物消耗。
    Deshwal公关,TiwariP.调查重症监护病房抗菌药物使用量化指标的变异性:真实世界证据分析。印度J暴击护理中心2024;28(7):662-676。
    This study investigated variability among four indicators for quantifying antimicrobial use in intensive care units (ICUs): defined daily doses (DDD), prescribed daily doses (PDD), duration of therapy (DOT), and length of therapy (LOT) and recommended the most clinically relevant approach. Retrospective data from patients who had received at least one antimicrobial was analyzed. Patients whose records were incomplete or expired were excluded. Duration of therapy (24433/1000 PDs) and LOTs (12832/1000 PDs) underestimated the overall consumption of antimicrobials compared with DDD of 28391/1000 PDs. Whereas PDD (46699/1000 PDs) overestimated it. Comparison analysis detected % differences of 13.94, 23.92, and 54.80% between DDD and DOT, DDD and PDD, and DDD and LOT, indicators respectively. Linear regression revealed stronger (r 2 = 0.86), moderate (r 2 = 0.50), and moderate (r 2 =0.60) correlation between DDD and DOT, DDD and PDD and DDD and LOT indicators respectively. According to findings, combining DOT and DDD is a more practical method to quantify antimicrobial consumption in hospital ICUs.
    UNASSIGNED: Deshwal PR, Tiwari P. Investigating the Variability among Indicators for Quantifying Antimicrobial Use in the Intensive Care Units: Analysis of Real-world Evidence. Indian J Crit Care Med 2024;28(7):662-676.
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  • 文章类型: Journal Article
    医疗保健相关感染(HAI)和抗菌药物使用(AMU)是抗菌素耐药性的驱动因素,并且需要强大的数据来告知干预措施和跟踪变化。我们旨在估计莫尔兹比港综合医院(PMGH)的HAI和AMU的患病率,巴布亚新几内亚最大的医院。
    我们于2023年5月在PMGH使用欧洲疾病预防和控制中心(ECDC)PPS协议对HAI和AMU进行了点患病率调查(PPS)。我们纳入了所有重症监护患者,并随机抽取了其他急诊病房中一半的患者。我们计算了加权HAI和AMU患病率估计值,以解释这一抽样策略。还计算了包括医师诊断在内的扩展定义的加权HAI估计值。
    在18个病房接受调查的361名患者中,ECDC方案确定了26例患者中的28例HAIs,导致加权HAI患病率为6.7%(95%CI:4.6,9.8)。手术部位感染(9/28,32%)是最常见的HAI。在ECDC定义中添加医师诊断时,更多的皮肤和软组织,呼吸,并检测到血液HAIs,加权HAI患病率为12.4%(95%CI:9.4,16.3)。AMU的患病率为66.5%(95CI:61.3,71.2),73.2%(263/359)的抗生素来自世界卫生组织接入组。
    这是巴布亚新几内亚首次报道的HAI和AMU医院PPS。这些结果可用于优先考虑干预措施,并作为未来点患病率调查可以比较的基线。
    澳大利亚政府外交与贸易部和治疗指南有限公司澳大利亚。
    UNASSIGNED: Healthcare-associated infections (HAI) and antimicrobial use (AMU) are drivers for antimicrobial resistance, and robust data are required to inform interventions and track changes. We aimed to estimate the prevalence of HAI and AMU at Port Moresby General Hospital (PMGH), the largest hospital in Papua New Guinea.
    UNASSIGNED: We did a point prevalence survey (PPS) on HAI and AMU at PMGH in May 2023 using the European Centre for Disease Prevention and Control (ECDC) PPS protocol. We included all critical care patients and randomly sampled half of the patients in other acute-care wards. We calculated weighted HAI and AMU prevalence estimates to account for this sampling strategy. Weighted HAI estimates were also calculated for an expanded definition that included physician diagnosis.
    UNASSIGNED: Of 361 patients surveyed in 18 wards, the ECDC protocol identified 28 HAIs in 26 patients, resulting in a weighted HAI prevalence of 6.7% (95% CI: 4.6, 9.8). Surgical site infections (9/28, 32%) were the most common HAI. When adding physician diagnosis to the ECDC definitions, more skin and soft tissue, respiratory, and bloodstream HAIs were detected, and the weighted HAI prevalence was 12.4% (95% CI: 9.4, 16.3). The prevalence of AMU was 66.5% (95%CI: 61.3, 71.2), and 73.2% (263/359) of antibiotics were from the World Health Organization Access group.
    UNASSIGNED: This is the first reported hospital PPS of HAI and AMU in Papua New Guinea. These results can be used to prioritise interventions, and as a baseline against which future point prevalence surveys can be compared.
    UNASSIGNED: Australian Government Department of Foreign Affairs and Trade and Therapeutic Guidelines Limited Australia.
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  • 文章类型: Journal Article
    在低收入和中等收入国家,关于水产养殖中抗菌药物使用(AMU)和抗菌素耐药性(AMR)的数据很少。因此,总结AMU上的记录数据,抗菌残留物(AR),非洲水产养殖中的AMR是了解公共卫生风险的关键。谷歌学者,PubMed,非洲在线期刊,根据PRISMA指南,搜索了Medline以英语和法语发表的文章。使用具有严格的包含和排除标准的结构化搜索字符串来检索和筛选文章。使用随机效应模型计算每个病原体-抗微生物剂对的合并患病率和95%置信区间。在审查的113篇全文中,41符合资格标准。大多数文章报告了AMR(35;85.4%),而少数人在鱼类中使用AMU(3;7.3%)和AR(3;7.3%)。文章来自西非(23;56.1%),北非(8;19.7%),和东非(7;17.1%)。关于鱼类养殖中使用的抗菌剂,四环素是最常用的抗菌药物,这证明了在鱼类中观察到的残留物的高患病率(高达56.7%)。对于AMR,共测试了69种抗菌药物对24种细菌的分离。细菌对所有类别的抗微生物剂都具有抗性,并表现出高水平的多药耐药性。大肠杆菌,沙门氏菌属。,和葡萄球菌属。在16、10和8项研究中报告,分别,多药耐药率为43.1%[95%CI(32.0-55.0)],40.3%[95%CI(24.1-58.1)]和31.3%[95%CI(17.5-49.4)],分别。这篇综述强调了水产养殖细菌对常用抗菌药物的高多药耐药率,比如四环素,氨苄青霉素,复方新诺明,庆大霉素,和阿莫西林,在非洲。这些发现还强调了缺乏关于水产养殖部门AMU和残留物的数据,并应作出更多努力来填补这些空白,减轻AMR对非洲公共卫生的负担。
    In low- and middle-income countries, data on antimicrobial use (AMU) and antimicrobial resistance (AMR) in aquaculture are scarce. Therefore, summarizing documented data on AMU, antimicrobial residue (AR), and AMR in aquaculture in Africa is key to understanding the risk to public health. Google Scholar, PubMed, African Journals online, and Medline were searched for articles published in English and French following the PRISMA guidelines. A structured search string was used with strict inclusion and exclusion criteria to retrieve and screen the articles. The pooled prevalence and 95% confidence intervals were calculated for each pathogen-antimicrobial pair using random effects models. Among the 113 full-text articles reviewed, 41 met the eligibility criteria. The majority of the articles reported AMR (35; 85.4%), while a few were on AMU (3; 7.3%) and AR (3; 7.3%) in fish. The articles originated from West Africa (23; 56.1%), North Africa (8; 19.7%), and East Africa (7; 17.1%). Concerning the antimicrobial agents used in fish farming, tetracycline was the most common antimicrobial class used, which justified the high prevalence of residues (up to 56.7%) observed in fish. For AMR, a total of 69 antimicrobial agents were tested against 24 types of bacteria isolated. Bacteria were resistant to all classes of antimicrobial agents and exhibited high levels of multidrug resistance. Escherichia coli, Salmonella spp., and Staphylococcus spp. were reported in 16, 10, and 8 studies, respectively, with multidrug resistance rates of 43.1% [95% CI (32.0-55.0)], 40.3% [95% CI (24.1-58.1)] and 31.3% [95% CI (17.5-49.4)], respectively. This review highlights the high multidrug resistance rate of bacteria from aquaculture to commonly used antimicrobial agents, such as tetracycline, ampicillin, cotrimoxazole, gentamicin, and amoxicillin, in Africa. These findings also highlighted the lack of data on AMU and residue in the aquaculture sector, and additional efforts should be made to fill these gaps and mitigate the burden of AMR on public health in Africa.
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  • 文章类型: Journal Article
    屠宰场中的几个步骤可以影响用于进一步肉类加工的动物尸体上微生物和相关抗性基因(ARG)的存在。我们调查了这些过程如何影响具有不同农场抗菌药物暴露状态的猪群体的耐药性-微生物组。从他们进入屠宰场的那一刻起,直到尸体加工结束。使用靶向富集宏基因组方法,我们确定了672个独特的ARGs赋予抗性43个不同的AMR类从汇集的皮肤(N=42)和car体拭子(N=63)顺序收集之前,during,在屠宰过程和食品安全干预之后。我们观察到屠宰前后猪的耐药性和微生物谱的显着变化,以及ARG计数的显著下降,多样性,屠宰和屠体加工过程中的微生物DNA负荷,不管以前在农场的抗菌治疗。这些结果表明,屠宰场现有的干预措施不仅有效地减少了病原体负荷,而且还减少了总的细菌负担,包括猪肉尸体上的ARGs。伴随着微生物和ARG计数的减少,我们观察到非药物特异性ARGs的相对丰度增加,比如那些赋予金属和杀生物剂抗性的人,特别是汞。使用严格的共定位程序,我们发现大多数汞ARGs与假单胞菌科和肠杆菌科的基因组相关。总的来说,这些发现表明,屠宰场内的屠宰和加工实践可以在从活肌肉到肉的过渡过程中塑造猪肉尸体的微生物和ARG特征。
    Several steps in the abattoir can influence the presence of microbes and associated resistance genes (ARGs) on the animal carcasses used for further meat processing. We investigated how these processes influence the resistome-microbiome of groups of pigs with different on-farm antimicrobial exposure status, from the moment they entered the abattoir until the end of carcass processing. Using a targeted enrichment metagenomic approach, we identified 672 unique ARGs conferring resistance to 43 distinct AMR classes from pooled skin (N = 42) and carcass swabs (N = 63) collected sequentially before, during, and after the slaughter process and food safety interventions. We observed significant variations in the resistome and microbial profiles of pigs before and after slaughter, as well as a significant decline in ARG counts, diversity, and microbial DNA load during slaughter and carcass processing, irrespective of prior antimicrobial treatments on the farm. These results suggest that existing interventions in the abattoir are effective in reducing not only the pathogen load but also the overall bacterial burden, including ARGs on pork carcasses. Concomitant with reductions in microbial and ARG counts, we observed an increase in the relative abundance of non-drug-specific ARGs, such as those conferring resistance to metals and biocides, and in particular mercury. Using a strict colocalization procedure, we found that most mercury ARGs were associated with genomes from the Pseudomonadaceae and Enterobacteriaceae families. Collectively, these findings demonstrate that slaughter and processing practices within the abattoir can shape the microbial and ARG profiles of pork carcasses during the transition from living muscle to meat.
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