comparative biology

比较生物学
  • 文章类型: Journal Article
    结构和功能的不对称在每一种生命形式中都可以追溯到,和一些侧缘是同源的。从功能上讲,大脑两半之间的分工是神经系统的基本特征,甚至在脊椎动物出现之前就出现了。这种专业化在人类中最著名的表达是手支配,也被称为惯用手。即使手/肢/爪优势与神经系统的存在更常见,它也以其自身的形式在非生物体中观察到,比如植物。迄今为止,关于这种优势在植物中可能的功能意义知之甚少,许多问题仍然悬而未决(其中,它是否反映了广义的行为不对称)。这里,我们提出了一种比较方法来研究惯用手法,包括植物,通过利用已经用于研究人类和各种动物物种的侧向性的实验模型和范例。通过这种方法,我们的目标是丰富我们对自然王国中惯用手的概念的了解。
    Structural and functional asymmetries are traceable in every form of life, and some lateralities are homologous. Functionally speaking, the division of labour between the two halves of the brain is a basic characteristic of the nervous system that arose even before the appearance of vertebrates. The most well-known expression of this specialisation in humans is hand dominance, also known as handedness. Even if hand/limb/paw dominance is far more commonly associated with the presence of a nervous system, it is also observed in its own form in aneural organisms, such as plants. To date, little is known regarding the possible functional significance of this dominance in plants, and many questions remain open (among them, whether it reflects a generalised behavioural asymmetry). Here, we propose a comparative approach to the study of handedness, including plants, by taking advantage of the experimental models and paradigms already used to study laterality in humans and various animal species. By taking this approach, we aim to enrich our knowledge of the concept of handedness across natural kingdoms.
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  • 文章类型: Preprint
    阿尔茨海默病(AD)呈现出分子改变的复杂相互作用,然而,了解其发病机制仍然是一个挑战。在这项研究中,与健康对照相比,我们深入研究了AD大脑中蛋白质组和转录组变化的复杂图景,检查788个大脑样本,揭示蛋白质和mRNA水平的常见变化。此外,我们的分析揭示了AD大脑中异常能量代谢途径中蛋白质水平的明显变化,这在mRNA水平上并不明显.这表明蛋白质表达的变化可以为AD发病机理提供更深层次的分子代表。随后,使用比较蛋白质组学方法,我们探索了间充质干细胞衍生的细胞外载体(EV)的治疗潜力,通过各种方法隔离,减轻蛋白质水平的AD相关变化。我们的分析揭示了一种特定的EV亚型,可用于补偿AD脑中线粒体蛋白质失调。通过使用网络生物学方法,我们进一步揭示了关键治疗蛋白的潜在调节因子.总的来说,我们的研究阐明了蛋白质组改变在AD发病机制中的意义,并确定了特定EV亚群的治疗前景,该亚群具有减少的促炎蛋白负荷和富含靶向线粒体蛋白质的蛋白质。
    Alzheimer\'s disease (AD) presents a complex interplay of molecular alterations, yet understanding its pathogenesis remains a challenge. In this study, we delved into the intricate landscape of proteome and transcriptome changes in AD brains compared to healthy controls, examining 788 brain samples revealing common alterations at both protein and mRNA levels. Moreover, our analysis revealed distinct protein-level changes in aberrant energy metabolism pathways in AD brains that were not evident at the mRNA level. This suggests that the changes in protein expression could provide a deeper molecular representation of AD pathogenesis. Subsequently, using a comparative proteomic approach, we explored the therapeutic potential of mesenchymal stem cell-derived extracellular vehicles (EVs), isolated through various methods, in mitigating AD-associated changes at the protein level. Our analysis revealed a particular EV-subtype that can be utilized for compensating dysregulated mitochondrial proteostasis in the AD brain. By using network biology approaches, we further revealed the potential regulators of key therapeutic proteins. Overall, our study illuminates the significance of proteome alterations in AD pathogenesis and identifies the therapeutic promise of a specific EV subpopulation with reduced pro-inflammatory protein cargo and enriched proteins to target mitochondrial proteostasis.
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  • 文章类型: Journal Article
    寻找变幻莫测的衰老解决方案,历史上,通过利用少数现有的和完善的动物模型系统,类似于夜间在路灯下的明亮光线下进行搜索。在我作为比较生物学家的整个职业生涯中,我冒险进入四大洲的黑暗,研究了150多种不同的动物,其中许多已经进化出了非凡的适应性,可以在实验室环境之外的严酷和崎岖的健身环境中生存。在这个研究员论坛上,我将讨论我过去25年研究的主要重点,并深入挖掘超自然长寿裸痣鼠的生物学,使其成为表征成功的抗衰老策略的理想模型系统。
    The search for solutions to the vagaries of aging has, historically, been akin to searching at night in the bright light under street lamps by utilizing the few preexisting and well-established animal model systems. Throughout my career as a comparative biologist, I have ventured into the darkness across 4 continents and studied over 150 different animal species, many of which have evolved remarkable adaptations to survive on the harsh and rugged fitness landscape that exists outside of the laboratory setting. In this Fellows Forum, I will discuss the main focus of my research for the last 25 years and dig deeply into the biology of the preternaturally long-lived naked mole-rat that makes it an ideal model system for the characterization of successful strategies to combat aging.
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  • 文章类型: Journal Article
    基于静息状态功能磁共振成像(fMRI)的功能性脑连接已被证明与人类的个性和行为相关。在这项研究中,我们试图知道狗的能力和特征是否可以从它们的静息状态连通性来预测,就像人类一样。我们训练清醒的狗在获取静息状态fMRI数据时,将它们的头部保持在3TMRI扫描仪中。犬的行为特征是捕捉它们狩猎的综合行为得分,检索,和环境健全。在检测器狗训练的三个不同时间点获取功能扫描和行为测量。第一时间点(TP1)是在狗进入正式的工作检测器狗训练之前。第二个时间点(TP2)是在正式的探测器犬训练后不久。第三个时间点(TP3)是在对检测犬进行训练后的三个月,而狗则参与了检测工作的维护训练计划。我们假设,狗大脑中的静息状态FC与行为测量之间的相关性将在其检测训练过程中(从TP1到TP2)发生显着变化,并且在随后的几个月的检测工作(从TP2到TP3)中保持不变。为了进一步研究可以预测训练成功的静息状态FC特征,在TP1的狗被分为成功组和不成功组。我们观察到一个核心大脑网络,该网络显示出相对稳定(相对于时间)的相互作用模式,与失败相比,成功的检测犬明显更强,并且其连接强度在第一个时间点预测了给定的狗是否最终成功成为检测犬。观察到第二个基于本体的灵活外围网络,其连接强度随检测训练的变化跟踪了训练程序上行为的相应变化。比较狗和人类的大脑,狗的脑干和额叶皮层之间的功能连接与人类的蓝斑和左中额回之间的功能连接相对应,暗示了一种共享的气味学习和检索机制。总的来说,研究结果指出了系统发育和个体发育对产生两个可分离的功能性神经网络的狗的影响。
    Functional brain connectivity based on resting-state functional magnetic resonance imaging (fMRI) has been shown to be correlated with human personality and behavior. In this study, we sought to know whether capabilities and traits in dogs can be predicted from their resting-state connectivity, as in humans. We trained awake dogs to keep their head still inside a 3T MRI scanner while resting-state fMRI data was acquired. Canine behavior was characterized by an integrated behavioral score capturing their hunting, retrieving, and environmental soundness. Functional scans and behavioral measures were acquired at three different time points across detector dog training. The first time point (TP1) was prior to the dogs entering formal working detector dog training. The second time point (TP2) was soon after formal detector dog training. The third time point (TP3) was three months\' post detector dog training while the dogs were engaged in a program of maintenance training for detection work. We hypothesized that the correlation between resting-state FC in the dog brain and behavior measures would significantly change during their detection training process (from TP1 to TP2) and would maintain for the subsequent several months of detection work (from TP2 to TP3). To further study the resting-state FC features that can predict the success of training, dogs at TP1 were divided into a successful group and a non-successful group. We observed a core brain network which showed relatively stable (with respect to time) patterns of interaction that were significantly stronger in successful detector dogs compared to failures and whose connectivity strength at the first time point predicted whether a given dog was eventually successful in becoming a detector dog. A second ontologically based flexible peripheral network was observed whose changes in connectivity strength with detection training tracked corresponding changes in behavior over the training program. Comparing dog and human brains, the functional connectivity between the brain stem and the frontal cortex in dogs corresponded to that between the locus coeruleus and left middle frontal gyrus in humans, suggestive of a shared mechanism for learning and retrieval of odors. Overall, the findings point toward the influence of phylogeny and ontogeny in dogs producing two dissociable functional neural networks.
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  • 文章类型: Editorial
    暂无摘要。
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  • 文章类型: Editorial
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  • 文章类型: Journal Article
    目的:腺毛与植物的直接和间接防御有关。然而,由于草食性,腺毛和非腺毛的进化程度尚不清楚,因为他们的遗传能力,它们与食草动物抗性的联系,他们之间的取舍,它们与其他功能的关联很少被量化。
    方法:我们对毛虫和食草动物对通才毛虫的抗性进行了系统发育比较,Heliothisviresces,在tarweed物种(Asteraceae:Madiinae)之间进行遗传相关性研究,比较了三种tarweed物种的母体半同胞之间的相同性状。
    结果:在一种tarweet物种中,我们没有发现草食动物的生长速率在有更多腺体或更密集的毛状体的tarweet个体或母体同胞组上下降的证据。然而,具有更多腺体和更少的非腺体毛状体的tarweet物种导致生长较慢的草食动物。同样,在tarweet物种中,腺毛和非腺毛之间的权衡很明显,但不是在一个物种内的个体或同胞群体之间。
    结论:我们的结果表明,这种关键的草食动物没有选择毛状体作为tarweet物种的直接防御。然而,毛状体在物种之间差异很大,可能会影响食草动物对这些物种的压力。我们的结果表明,植物性状之间的权衡,以及对这些特征功能的推断,可以取决于规模。
    Glandular trichomes are implicated in direct and indirect defense of plants. However, the degree to which glandular and non-glandular trichomes have evolved as a consequence of herbivory remains unclear, because their heritability, their association with herbivore resistance, their trade-offs with one another, and their association with other functions are rarely quantified.
    We conducted a phylogenetic comparison of trichomes and herbivore resistance against the generalist caterpillar, Heliothis virescens, among tarweed species (Asteraceae: Madiinae) and a genetic correlation study comparing those same traits among maternal half-sibs of three tarweed species.
    Within a tarweed species, we found no evidence that herbivore growth rate decreased on tarweed individuals or maternal sib groups with more glandularity or denser trichomes. However, tarweed species with more glandularity and fewer non-glandular trichomes resulted in slower-growing herbivores. Likewise, a trade-off between glandular and non-glandular trichomes was apparent among tarweed species, but not among individuals or sib groups within a species.
    Our results suggest that this key herbivore does not select for trichomes as a direct defense in tarweed species. However, trichomes differed substantially among species and likely affect herbivore pressure on those species. Our results demonstrate that trade-offs among plant traits, as well as inference on the function of those traits, can depend on scale.
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  • 文章类型: Journal Article
    识别结构-功能对应关系是生物学家的主要目标,认知神经科学家,和大脑映射器。最近的研究已经确定了认知任务的表现与是否存在小的,浅压痕,或沟,人类的大脑。在先前发现的基础上,左前外侧前额叶皮层(aLPFC)中腹侧中间额叶沟(pimfs-v)的存在与儿童和青少年的推理任务表现有关,我们测试了这种关系是否扩展到不同的样本,年龄组,和推理任务。正如预测的那样,在年轻人(22~36岁)中,该aLPFC沟的存在也与较高的推理评分相关.这些发现不仅直接发展,但也是进化的相关性-最近的工作表明,pimfs-v在黑猩猩中极为罕见。因此,pimfs-v是一个关键的发展,认知,和进化相关的特征,应该在未来的研究中考虑,研究大脑多尺度解剖和功能特征之间的复杂关系如何引起抽象思维。
    Identifying structure-function correspondences is a major goal among biologists, cognitive neuroscientists, and brain mappers. Recent studies have identified relationships between performance on cognitive tasks and the presence or absence of small, shallow indentations, or sulci, of the human brain. Building on the previous finding that the presence of the ventral para-intermediate frontal sulcus (pimfs-v) in the left anterior lateral prefrontal cortex (aLPFC) was related to reasoning task performance in children and adolescents, we tested whether this relationship extended to a different sample, age group, and reasoning task. As predicted, the presence of this aLPFC sulcus was also associated with higher reasoning scores in young adults (ages 22-36). These findings have not only direct developmental, but also evolutionary relevance-as recent work shows that the pimfs-v is exceedingly rare in chimpanzees. Thus, the pimfs-v is a key developmental, cognitive, and evolutionarily relevant feature that should be considered in future studies examining how the complex relationships among multiscale anatomical and functional features of the brain give rise to abstract thought.
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  • 文章类型: Journal Article
    老化的比较研究是确定导致老化的一般性质和过程的有前途的方法。到目前为止,许多动物衰老的比较研究都集中在相对狭窄的物种群体上,方法创新现在允许研究,包括进化遥远的物种。然而,在具有不同生活史的各种物种中进行衰老的比较研究,给实验设计带来了额外的挑战。这里,我们讨论这些挑战,突出需要解决的最紧迫问题,并根据目前的方法提供建议,以成功地在整个动物界进行比较衰老研究。
    Comparative studies of aging are a promising approach to identifying general properties of and processes leading to aging. While to date, many comparative studies of aging in animals have focused on relatively narrow species groups, methodological innovations now allow for studies that include evolutionary distant species. However, comparative studies of aging across a wide range of species that have distinct life histories introduce additional challenges in experimental design. Here, we discuss these challenges, highlight the most pressing problems that need to be solved, and provide suggestions based on current approaches to successfully carry out comparative aging studies across the animal kingdom.
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  • 文章类型: Journal Article
    背景:实验模型是神经退行性疾病研究中必不可少的工具。然而,在模型系统中发现的见解和药物的翻译已被证明具有极大的挑战性,在人体临床试验中受到高失败率的损害。
    方法:在这里,我们回顾了人工智能(AI)和机器学习(ML)在痴呆症研究的实验医学中的应用。
    结果:考虑到临床前痴呆研究中其他物种或模型系统与人类生物学之间的可重复性和翻译的特定挑战,我们重点介绍了可用于量化和评估可译性的最佳实践和资源。然后,我们评估了如何应用AI和ML方法来增强跨模型的可重复性和对人类生物学的翻译。同时保持生物学的可解释性。
    结论:实验医学中的AI和ML方法仍处于起步阶段。然而,如果有足够的基础,它们有很大的潜力来加强临床前研究和翻译,健壮,和可重复的实验数据。
    结论:AI在实验医学中的应用越来越多。我们发现了再现性方面的问题,跨物种翻译,以及该领域的数据管理。我们的审查重点介绍了数据资源和AI方法作为解决方案。使用AI进行的多组分析为药物发现提供了令人兴奋的未来可能性。
    Experimental models are essential tools in neurodegenerative disease research. However, the translation of insights and drugs discovered in model systems has proven immensely challenging, marred by high failure rates in human clinical trials.
    Here we review the application of artificial intelligence (AI) and machine learning (ML) in experimental medicine for dementia research.
    Considering the specific challenges of reproducibility and translation between other species or model systems and human biology in preclinical dementia research, we highlight best practices and resources that can be leveraged to quantify and evaluate translatability. We then evaluate how AI and ML approaches could be applied to enhance both cross-model reproducibility and translation to human biology, while sustaining biological interpretability.
    AI and ML approaches in experimental medicine remain in their infancy. However, they have great potential to strengthen preclinical research and translation if based upon adequate, robust, and reproducible experimental data.
    There are increasing applications of AI in experimental medicine. We identified issues in reproducibility, cross-species translation, and data curation in the field. Our review highlights data resources and AI approaches as solutions. Multi-omics analysis with AI offers exciting future possibilities in drug discovery.
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