comparative biology

比较生物学
  • 文章类型: Journal Article
    高度迁移的研究和重要性引起了动物学家的兴趣。海拔移民在分类上分布广泛,并作为部分或完全移民跨越海拔梯度,让他们接受广泛的环境和生态相互作用。这里,我们简要介绍了该领域的最新发展,并提出了未来的方向,以建立更具分类学包容性的比较框架来研究海拔迁移。我们的框架以高度迁移的工作定义为中心,该定义取决于其生物学相关性,这是尺度依赖性的,与健身结果有关。我们讨论了海拔运动的语言细微差别,并提供了具体步骤来比较传统上不同的研究系统中的海拔迁移现象。一起,我们的比较框架概述了一个“表型空间”,它将来自不同血统和生物群落的高原移民所遇到的生物和非生物相互作用进行了背景化。我们还总结了新的机会,方法,以及正在进行的海拔迁移研究面临的挑战。一个执着的,主要挑战是表征物种内部和物种之间海拔迁移的分类学范围。幸运的是,已经开发了许多新方法来帮助研究人员评估海拔迁移的分类患病率-每种方法都有自己的优缺点。改进的比较框架将使研究不同学科和分类组的研究人员能够更好地交流和测试有关种群和物种之间海拔迁移变化的进化和生态驱动因素的假设。
    The study and importance of altitudinal migration has attracted increasing interest among zoologists. Altitudinal migrants are taxonomically widespread and move across altitudinal gradients as partial or complete migrants, subjecting them to a wide array of environments and ecological interactions. Here, we present a brief synthesis of recent developments in the field and suggest future directions toward a more taxonomically inclusive comparative framework for the study of altitudinal migration. Our framework centers on a working definition of altitudinal migration that hinges on its biological relevance, which is scale-dependent and related to fitness outcomes. We discuss linguistic nuances of altitudinal movements and provide concrete steps to compare altitudinal migration phenomena across traditionally disparate study systems. Together, our comparative framework outlines a \"phenotypic space\" that contextualizes the biotic and abiotic interactions encountered by altitudinal migrants from divergent lineages and biomes. We also summarize new opportunities, methods, and challenges for the ongoing study of altitudinal migration. A persistent, primary challenge is characterizing the taxonomic extent of altitudinal migration within and among species. Fortunately, a host of new methods have been developed to help researchers assess the taxonomic prevalence of altitudinal migration-each with their own advantages and disadvantages. An improved comparative framework will allow researchers that study disparate disciplines and taxonomic groups to better communicate and to test hypotheses regarding the evolutionary and ecological drivers underlying variation in altitudinal migration among populations and species.
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  • 文章类型: Journal Article
    结构和功能的不对称在每一种生命形式中都可以追溯到,和一些侧缘是同源的。从功能上讲,大脑两半之间的分工是神经系统的基本特征,甚至在脊椎动物出现之前就出现了。这种专业化在人类中最著名的表达是手支配,也被称为惯用手。即使手/肢/爪优势与神经系统的存在更常见,它也以其自身的形式在非生物体中观察到,比如植物。迄今为止,关于这种优势在植物中可能的功能意义知之甚少,许多问题仍然悬而未决(其中,它是否反映了广义的行为不对称)。这里,我们提出了一种比较方法来研究惯用手法,包括植物,通过利用已经用于研究人类和各种动物物种的侧向性的实验模型和范例。通过这种方法,我们的目标是丰富我们对自然王国中惯用手的概念的了解。
    Structural and functional asymmetries are traceable in every form of life, and some lateralities are homologous. Functionally speaking, the division of labour between the two halves of the brain is a basic characteristic of the nervous system that arose even before the appearance of vertebrates. The most well-known expression of this specialisation in humans is hand dominance, also known as handedness. Even if hand/limb/paw dominance is far more commonly associated with the presence of a nervous system, it is also observed in its own form in aneural organisms, such as plants. To date, little is known regarding the possible functional significance of this dominance in plants, and many questions remain open (among them, whether it reflects a generalised behavioural asymmetry). Here, we propose a comparative approach to the study of handedness, including plants, by taking advantage of the experimental models and paradigms already used to study laterality in humans and various animal species. By taking this approach, we aim to enrich our knowledge of the concept of handedness across natural kingdoms.
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  • 文章类型: Preprint
    阿尔茨海默病(AD)呈现出分子改变的复杂相互作用,然而,了解其发病机制仍然是一个挑战。在这项研究中,与健康对照相比,我们深入研究了AD大脑中蛋白质组和转录组变化的复杂图景,检查788个大脑样本,揭示蛋白质和mRNA水平的常见变化。此外,我们的分析揭示了AD大脑中异常能量代谢途径中蛋白质水平的明显变化,这在mRNA水平上并不明显.这表明蛋白质表达的变化可以为AD发病机理提供更深层次的分子代表。随后,使用比较蛋白质组学方法,我们探索了间充质干细胞衍生的细胞外载体(EV)的治疗潜力,通过各种方法隔离,减轻蛋白质水平的AD相关变化。我们的分析揭示了一种特定的EV亚型,可用于补偿AD脑中线粒体蛋白质失调。通过使用网络生物学方法,我们进一步揭示了关键治疗蛋白的潜在调节因子.总的来说,我们的研究阐明了蛋白质组改变在AD发病机制中的意义,并确定了特定EV亚群的治疗前景,该亚群具有减少的促炎蛋白负荷和富含靶向线粒体蛋白质的蛋白质。
    Alzheimer\'s disease (AD) presents a complex interplay of molecular alterations, yet understanding its pathogenesis remains a challenge. In this study, we delved into the intricate landscape of proteome and transcriptome changes in AD brains compared to healthy controls, examining 788 brain samples revealing common alterations at both protein and mRNA levels. Moreover, our analysis revealed distinct protein-level changes in aberrant energy metabolism pathways in AD brains that were not evident at the mRNA level. This suggests that the changes in protein expression could provide a deeper molecular representation of AD pathogenesis. Subsequently, using a comparative proteomic approach, we explored the therapeutic potential of mesenchymal stem cell-derived extracellular vehicles (EVs), isolated through various methods, in mitigating AD-associated changes at the protein level. Our analysis revealed a particular EV-subtype that can be utilized for compensating dysregulated mitochondrial proteostasis in the AD brain. By using network biology approaches, we further revealed the potential regulators of key therapeutic proteins. Overall, our study illuminates the significance of proteome alterations in AD pathogenesis and identifies the therapeutic promise of a specific EV subpopulation with reduced pro-inflammatory protein cargo and enriched proteins to target mitochondrial proteostasis.
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  • 文章类型: Journal Article
    基于静息状态功能磁共振成像(fMRI)的功能性脑连接已被证明与人类的个性和行为相关。在这项研究中,我们试图知道狗的能力和特征是否可以从它们的静息状态连通性来预测,就像人类一样。我们训练清醒的狗在获取静息状态fMRI数据时,将它们的头部保持在3TMRI扫描仪中。犬的行为特征是捕捉它们狩猎的综合行为得分,检索,和环境健全。在检测器狗训练的三个不同时间点获取功能扫描和行为测量。第一时间点(TP1)是在狗进入正式的工作检测器狗训练之前。第二个时间点(TP2)是在正式的探测器犬训练后不久。第三个时间点(TP3)是在对检测犬进行训练后的三个月,而狗则参与了检测工作的维护训练计划。我们假设,狗大脑中的静息状态FC与行为测量之间的相关性将在其检测训练过程中(从TP1到TP2)发生显着变化,并且在随后的几个月的检测工作(从TP2到TP3)中保持不变。为了进一步研究可以预测训练成功的静息状态FC特征,在TP1的狗被分为成功组和不成功组。我们观察到一个核心大脑网络,该网络显示出相对稳定(相对于时间)的相互作用模式,与失败相比,成功的检测犬明显更强,并且其连接强度在第一个时间点预测了给定的狗是否最终成功成为检测犬。观察到第二个基于本体的灵活外围网络,其连接强度随检测训练的变化跟踪了训练程序上行为的相应变化。比较狗和人类的大脑,狗的脑干和额叶皮层之间的功能连接与人类的蓝斑和左中额回之间的功能连接相对应,暗示了一种共享的气味学习和检索机制。总的来说,研究结果指出了系统发育和个体发育对产生两个可分离的功能性神经网络的狗的影响。
    Functional brain connectivity based on resting-state functional magnetic resonance imaging (fMRI) has been shown to be correlated with human personality and behavior. In this study, we sought to know whether capabilities and traits in dogs can be predicted from their resting-state connectivity, as in humans. We trained awake dogs to keep their head still inside a 3T MRI scanner while resting-state fMRI data was acquired. Canine behavior was characterized by an integrated behavioral score capturing their hunting, retrieving, and environmental soundness. Functional scans and behavioral measures were acquired at three different time points across detector dog training. The first time point (TP1) was prior to the dogs entering formal working detector dog training. The second time point (TP2) was soon after formal detector dog training. The third time point (TP3) was three months\' post detector dog training while the dogs were engaged in a program of maintenance training for detection work. We hypothesized that the correlation between resting-state FC in the dog brain and behavior measures would significantly change during their detection training process (from TP1 to TP2) and would maintain for the subsequent several months of detection work (from TP2 to TP3). To further study the resting-state FC features that can predict the success of training, dogs at TP1 were divided into a successful group and a non-successful group. We observed a core brain network which showed relatively stable (with respect to time) patterns of interaction that were significantly stronger in successful detector dogs compared to failures and whose connectivity strength at the first time point predicted whether a given dog was eventually successful in becoming a detector dog. A second ontologically based flexible peripheral network was observed whose changes in connectivity strength with detection training tracked corresponding changes in behavior over the training program. Comparing dog and human brains, the functional connectivity between the brain stem and the frontal cortex in dogs corresponded to that between the locus coeruleus and left middle frontal gyrus in humans, suggestive of a shared mechanism for learning and retrieval of odors. Overall, the findings point toward the influence of phylogeny and ontogeny in dogs producing two dissociable functional neural networks.
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  • 文章类型: Editorial
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  • 文章类型: Editorial
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  • 文章类型: Journal Article
    老化的比较研究是确定导致老化的一般性质和过程的有前途的方法。到目前为止,许多动物衰老的比较研究都集中在相对狭窄的物种群体上,方法创新现在允许研究,包括进化遥远的物种。然而,在具有不同生活史的各种物种中进行衰老的比较研究,给实验设计带来了额外的挑战。这里,我们讨论这些挑战,突出需要解决的最紧迫问题,并根据目前的方法提供建议,以成功地在整个动物界进行比较衰老研究。
    Comparative studies of aging are a promising approach to identifying general properties of and processes leading to aging. While to date, many comparative studies of aging in animals have focused on relatively narrow species groups, methodological innovations now allow for studies that include evolutionary distant species. However, comparative studies of aging across a wide range of species that have distinct life histories introduce additional challenges in experimental design. Here, we discuss these challenges, highlight the most pressing problems that need to be solved, and provide suggestions based on current approaches to successfully carry out comparative aging studies across the animal kingdom.
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  • 文章类型: Review
    细胞间信号是多细胞生命不可或缺的一部分。了解信号分子在生命树的两个远程分支中如何发挥作用的共性和差异可能会阐明这些分子最初被招募用于细胞间信号传导的原因。在这里,我们回顾了三种高度研究的动物细胞间信号分子的植物功能,即谷氨酸,γ-氨基丁酸(GABA),还有褪黑激素.通过考虑它们在植物中的信号功能和更广泛的生理功能,我们认为,具有原始功能的分子作为活性离子物种清除的关键代谢物或活性参与者,有很高的机会成为细胞间信号分子。自然,通过质膜转换信息的机器的发展是必要的。其他三种经过充分研究的动物细胞间信号分子证明了这一事实,即血清素,多巴胺,还有乙酰胆碱,目前没有证据表明它们在植物中充当细胞间信号分子。
    Intercellular signalling is an indispensable part of multicellular life. Understanding the commonalities and differences in how signalling molecules function in two remote branches of the tree of life may shed light on the reasons these molecules were originally recruited for intercellular signalling. Here we review the plant function of three highly studied animal intercellular signalling molecules, namely glutamate, γ-aminobutyric acid (GABA), and melatonin. By considering both their signalling function in plants and their broader physiological function, we suggest that molecules with an original function as key metabolites or active participants in reactive ion species scavenging have a high chance of becoming intercellular signalling molecules. Naturally, the evolution of machinery to transduce a message across the plasma membrane is necessary. This fact is demonstrated by three other well-studied animal intercellular signalling molecules, namely serotonin, dopamine, and acetylcholine, for which there is currently no evidence that they act as intercellular signalling molecules in plants.
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  • 文章类型: Journal Article
    听觉领域丰富的比较研究历史为耳朵和大脑的声音信息处理提供了综合观点。由于基本的相似性,一些生物体已被证明是人类听觉的强大模型(例如,良好匹配的听力范围),而其他人则具有有趣的差异(例如,鼓膜耳),邀请进一步研究。在不同的“非传统”生物中工作,从小型哺乳动物到鸟类再到两栖动物,继续推动听觉科学向前发展,在此过程中实现了各种生物医学和技术进步。在这个简短的审查,主要限于四足脊椎动物,我们讨论了从外围到中枢神经系统的听力研究中比较研究的持续重要性,重点是突出的问题,如声音捕获机制,方向/空间信息的外围和中央处理,和非规范的听觉处理,包括传出和荷尔蒙的影响。
    A rich history of comparative research in the auditory field has afforded a synthetic view of sound information processing by ears and brains. Some organisms have proven to be powerful models for human hearing due to fundamental similarities (e.g., well-matched hearing ranges), while others feature intriguing differences (e.g., atympanic ears) that invite further study. Work across diverse \"non-traditional\" organisms, from small mammals to avians to amphibians and beyond, continues to propel auditory science forward, netting a variety of biomedical and technological advances along the way. In this brief review, limited primarily to tetrapod vertebrates, we discuss the continued importance of comparative studies in hearing research from the periphery to central nervous system with a focus on outstanding questions such as mechanisms for sound capture, peripheral and central processing of directional/spatial information, and non-canonical auditory processing, including efferent and hormonal effects.
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  • 文章类型: Preprint
    识别结构-功能对应是生物学家的主要目标。在神经生物学中,最近的发现确定了认知任务的表现与是否存在小的,浅压痕,或沟,人类的大脑。这里,我们测试了是否存在这样的沟,外侧前额叶皮质中的中间额叶沟(pimfs-v),与HumanConnectome项目(22-36岁)的年轻人的关系推理有关。在手动识别了144个半球的2,877个沟后,我们的结果表明,左半球pimfs-v的存在与关系推理任务的性能提高21-34%相关。这些发现具有直接的发育和进化相关性,因为最近的工作表明,pimfs-v的存在或不存在也与儿科队列中的推理表现有关。而且pimfs-v在黑猩猩中极为罕见。因此,pimfs-v是一个新颖的发展,认知,和进化相关的特征,应该在未来的研究中考虑,研究大脑多尺度解剖和功能特征之间的复杂关系如何引起抽象思维。
    Identifying structure-function correspondences is a major goal among biologists, cognitive neuroscientists, and brain mappers. Recent studies have identified relationships between performance on cognitive tasks and the presence or absence of small, shallow indentations, or sulci, of the human brain. Building on the previous finding that the presence of one such sulcus in the left anterior lateral prefrontal cortex (aLPFC) was related to reasoning task performance in children and adolescents, we tested whether this relationship extended to a different sample, age group, and reasoning task. As predicted, the presence of this aLPFC sulcus-the ventral para-intermediate frontal sulcus-was also associated with higher reasoning scores in young adults (ages 22-36). These findings have not only direct developmental, but also evolutionary relevance-as recent work shows that the pimfs-v is exceedingly rare in chimpanzees. Thus, the pimfs-v is a novel developmental, cognitive, and evolutionarily relevant feature that should be considered in future studies examining how the complex relationships among multiscale anatomical and functional features of the brain give rise to abstract thought.
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