Nested-PCR

巢式 PCR
  • 文章类型: Case Reports
    一个年轻的男性,来自东南亚的种植园工人,表现为非生产性咳嗽,间歇性高烧伴寒战,和显著的体重减轻超过两个月。先前的调查是非缴费型的,尽管有各种抗生素,他的症状持续存在。体格检查和常规调查,包括广泛的发热微生物检查都是无贡献的。对不明原因发热(PUO)进行的正电子发射断层扫描(PET-CT)扫描显示肺实变,纵隔淋巴结病,和脾微脓肿.在常规巢式聚合酶链反应(PCR)中,通过支气管内超声引导的经支气管针吸活检(EBUS-TBNA)从左叶间淋巴结吸出的材料对假性伯克霍尔德菌呈阳性,确认诊断为类lioidosis。在适当的抗生素治疗后,症状完全缓解。这个案例强调了诊断的挑战和需要先进的技术来识别类结节病,可以模仿肺结核。
    A young male, plantation worker from Southeast Asia, presented with a non-productive cough, intermittent high-grade fever with chills, and significant weight loss over two months. Prior investigations were non-contributory, despite various antibiotics, his symptoms persisted. Physical examination and routine investigations, including an extensive microbiological workup for fever were non-contributory. A positron emission tomography-computed tomography (PET-CT) scan performed for pyrexia of unknown origin (PUO) revealed pulmonary consolidation, mediastinal lymphadenopathy, and splenic microabscesses. Material aspirated via endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) from the left interlobar lymph node was positive for Burkholderia pseudomallei on conventional nested polymerase chain reaction (PCR), confirming a diagnosis of melioidosis. Following appropriate antibiotic therapy, there was a complete resolution of symptoms. This case underscores the diagnostic challenges and the need for advanced techniques in identifying melioidosis, which can mimic tuberculosis.
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  • 文章类型: Journal Article
    这项研究的目的是调查疏螺旋体属的存在和遗传属性。来自西阿塞拜疆省的猫和狗,位于伊朗西北部。共收集了猫的250份血样和狗的300份血样,以及关于他们年龄的信息,性别,品种,所有权状态,记录采样时间和区域。通过巢式PCR和测序完成阳性样品的鉴定,随后使用BioEdit软件对基因序列进行分析。疏螺旋体属的基因序列。在这项研究中,与GenBank®数据库中的参考序列具有100%的相似性。使用MEGA11构建系统发育树。结果表明,在猫的250份血液样本中,48(19.2%)的疏螺旋体属检测呈阳性。基因,猫的aCI从14.8%到24.53%。同样,在狗的300份血样中,45(15%)的疏螺旋体属检测呈阳性。基因,狗的aCI从11.4到19.48%。
    The objective of this study was to investigate the presence and genetic attributes of Borrelia spp. in cats and dogs from the West Azerbaijan Province, located in the northwest of Iran. A total of 250 blood samples from cats and 300 blood samples from dogs were collected, and information regarding their age, sex, breed, ownership status, sampling time and region was recorded. The identification of positive samples was accomplished through nested-PCR and sequencing, with subsequent analysis of the gene sequences conducted using BioEdit software. The gene sequences for Borrelia spp. in this study showed 100% similarity to reference sequences in the GenBank® database. Phylogenetic trees were built using MEGA11. The outcomes indicated that among 250 blood samples from cats, 48 (19.2%) tested positive for Borrelia spp. gene, with a CI from 14.8 to 24.53% for cats. Similarly, out of 300 blood samples from dogs, 45 (15%) tested positive for the Borrelia spp. gene, with a CI from 11.4 to 19.48% for dogs.
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  • 文章类型: Journal Article
    传染性支气管炎(IB)是家禽中具有全球分布的经济上重要的疾病。据报道,在埃塞俄比亚的商业和后院家禽中都有IB的发生,尽管全面的信息缺乏该疾病的患病率和循环血清型。
    从2021年11月至2022年6月,在东Shewa发现的七个商业农场进行了一项横断面研究,埃塞俄比亚中部。使用间接ELISA的血清学测定,胚胎卵中的病毒分离技术,以及分子技术,例如针对466bpS1基因的一步逆转录酶聚合酶链反应(RT-PCR)和巢式聚合酶链反应(PCR)。
    总共196个血液样本,7池(35)的拭子样本,并调查了5个气管样本库。血清学分析结果表明,发现97.96%(192/196;95%CI:94.86-99.44)的血清样品对抗IBV抗体呈阳性。在使用RT-PCR分析的7个拭子池和5个气管组织样本池中,33.3%(4/12)的样本全部来自拭子样本给出阳性结果。对RT-PCR阳性样品进行巢式PCR,产生295bp和154bp,表明IBV的Mass和793/B(4/91)菌株的循环,分别。接种到胚胎卵中的12个样本池显示出细胞病变的变化,例如充血,出血,和变形后只有三个通道。
    两种IBV血清型在埃塞俄比亚鸡中循环,马萨诸塞州血清型的分子鉴定是埃塞俄比亚的第一份报告。需要进一步的流行病学调查,以制定有效的控制措施。
    UNASSIGNED: Infectious bronchitis (IB) is an economically important disease in poultry with worldwide distribution. The occurrence of IB has been reported both in commercial and backyard poultry in Ethiopia, although comprehensive information lacks available prevalence of the disease and the circulating serotypes.
    UNASSIGNED: A cross-sectional study was conducted from November 2021 to June 2022 in seven commercial farms found in East Shewa, Central Ethiopia. Serological assay using indirect ELISA, virus isolation techniques in embryonated eggs, and molecular techniques such as one-step reverse transcriptase polymerase chain reaction (RT-PCR) and nested polymerase chain reaction (PCR) targeting a 466 bp S1 gene were employed.
    UNASSIGNED: A total of 196 blood samples, 7 pools (35) of swab samples, and 5 pools of tracheal samples were investigated. The results of serological analysis revealed that 97.96% (192/196; 95% CI: 94.86-99.44) of the sera samples were found to be positive for antibodies against IBV. Out of the 7 pools of swab and 5 pools of tracheal tissue samples analyzed using RT-PCR 33.3% (4/12) of them gave positive results all from swab samples. The RT-PCR-positive samples were subjected to a nested PCR yielding 295bp and 154bp indicating the circulation of Mass and 793/B (4/91) strains of IBV, respectively. The 12 pools of samples inoculated into embryonated egg showed cytopathic changes such as congestion, bleeding, and deformation only after three passages.
    UNASSIGNED: Two serotypes of IBV are circulating in Ethiopian chickens, and molecular identification of the Massachusetts serotype is the first report in Ethiopia. Further epidemiological investigation is needed in order to devise effective control measures.
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  • 文章类型: Journal Article
    背景:弓形虫的诊断和遗传特征(T。gondii)感染可以对预防弓形虫病的危险后果产生重大影响,特别是在免疫功能低下的人群中。
    目的:本研究的目的是评估血液透析患者血液样本中弓形虫的频率和基因分型。
    方法:在当前的调查中,共有379份血液样本取自血液透析患者,他们被转诊到伊朗西南部的阿瓦士教学医院.使用巢式PCR通过靶向B1基因来评估样品,然后,测序和系统发育树的构建。
    结果:T.巢式PCR在112份(29.55%)的血液样本中发现了刚地DNA。来自弓形虫的扩增子显示出与GenBank序列的高度同一性。系统发育分析表明,所有序列均与弓形虫I型密切相关。
    结论:由于血液透析患者中I型弓形虫病的发病率高,我们建议对弓形虫病进行系统筛查,以监测血液透析过程中弓形虫病的可能传播。
    BACKGROUND: The diagnosis and genetic characterization of Toxoplasma gondii (T. gondii) infection can make a significant influence to the prevention of the dangerous consequences of toxoplasmosis, particularly in immunocompromised people.
    OBJECTIVE: The aim of this investigation was to assess the frequency and genotyping of T. gondii in blood samples of patients with hemodialysis.
    METHODS: In the current investigation, a total of 379 blood samples were taken from subjects with hemodialysis who were referred to teaching hospital of Ahvaz in the southwest of Iran. The samples were evaluated using the Nested PCR by targeting the B1 gene, and then, sequencing and phylogenetic tree were constructed.
    RESULTS: T. gondii DNA was found in 112 (29.55%) of the blood samples by Nested PCR. Amplicons from T. gondii revealed high identity with GenBank sequences. The phylogenetic analysis revealed that all sequences were closely related to Type I of T. gondii.
    CONCLUSIONS: Because of the high incidence of toxoplasmosis with type I prevalent in hemodialysis patients, we recommend a systematic screening for toxoplasmosis to carry out for monitoring the possible dissemination of toxoplasmosis during hemodialysis.
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  • 文章类型: Journal Article
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  • 文章类型: Journal Article
    这项研究的目的是调查乌尔米亚市宠物猫中巴尔通菌的存在和遗传特征。位于伊朗西北部。收集了200只猫的血样,和他们的年龄,性别,并注意到品种。巢式PCR和测序用于鉴定阳性样品中的金塔纳芽孢杆菌。使用BioEdit软件分析ftsZ基因序列。本研究中获得的基因序列与GenBank®数据库中的参考序列具有100.00%的相似性,并使用MEGA11构建了系统发育树。结果显示,15%的猫(200份血样中的30份)检测出的金塔纳芽孢杆菌基因呈阳性,95%置信区间为10.71%至20.61%。
    The aim of this study was to investigate the presence and genetic characteristics of Bartonella quintana in pet cats from Urmia City, located in the northwest of Iran. Blood samples were collected from 200 cats, and their age, gender, and breed were noted. Nested-PCR and sequencing were used to identify B. quintana in positive samples, and the ftsZ gene sequences were analyzed using BioEdit software. The gene sequence obtained in this study exhibited 100.00 % similarity to reference sequences in the GenBank® database, and a phylogenetic tree was constructed using MEGA11. The results revealed that 15 % of the cats (30 out of 200 blood samples) tested positive for the B. quintana gene, with a 95 % confidence interval of 10.71 % to 20.61 %.
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  • 文章类型: Journal Article
    图拉西斯,Tularemia的病原体,是一种具有传染性的人畜共患疾病.这项研究旨在分子检测在西阿塞拜疆省收集的乌龟血液(n=100)和壁虱(n=100)中的土拉灵。伊朗通过采用Nested-PCR技术起诉Francisella属的16SrRNA基因。通过形态学分析,鉴定出的蜱为水霉。7%(95%CI:3.5%-13.75%)的动物血液样本对Francisella的存在产生了阳性结果。同时,在蜱虫样本中发现Francisella的比例为15%(15%)(95%CI:9%-23%).含有阳性结果的样品被具体地分类为土力氏杆菌亚种。holarctica.样本取自在Oshnaveyeh收集的属于埃及伊蚊的蜱虫,西阿塞拜疆省南部,伊朗。这项研究的目的是验证在西阿塞拜疆省发现的蜱中是否存在土拉伦斯。因此,重要的是要承认这些蜱通过蜱虫叮咬将细菌传播给牲畜和人类的潜力。
    Francisella tularensis, causative agent of tularemia, is a contagious zoonotic ailment. This study was aimed to molecularly detect F. tularensis in tortoise blood (n = 100) and ticks (n = 100) collected in the West Azerbaijan province, Iran suing a 16SrRNA gene of the Francisella genus through employment of the Nested-PCR technique. The identified ticks were s Hyalomma aegyptium by morphological analysis. Seven percent (with a 95% CI: 3.5%-13.75%) of animal blood samples yielded positive results for the presence of the Francisella. Meanwhile, the Francisella was identified in tick samples at a rate of fifteen percent (15%) (with a 95% CI: 9%-23%). The samples containing positive results were specifically classified as F. tularensis subsp. holarctica. The samples were taken from ticks belonging to the H. aegyptium species that were gathered in Oshnavieh, southern part of West Azerbaijan province, Iran. This research was aimed to validate the existence of F. tularensis in ticks found within the West Azerbaijan province. Consequently, it is vital to acknowledge the potential of these ticks to transmit the bacteria to both livestock and humans through tick bites in this specific area.
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  • 文章类型: Journal Article
    目的:先前的研究显示了关于BK病毒(BKV)垂直传播的有争议的结果。本研究旨在评估BKV在受孕产物(胚胎,胎儿,和/或胎盘)在怀孕的三个阶段。
    结果:在26个胎盘研究组织中,6个在孕早期,没有一个是积极的。妊娠中期的13种胎盘材料中只有一种(7.7%)为阳性。妊娠晚期的7种胎盘材料中只有一种(14%)是阳性的。有些病例在胎盘中未检测到病毒,但在其他组织中检测到BKV。在26个概念中,BKV阴性17例(65%),阳性9例(34.6%),7/13(54%)在第二次为阳性,2/7(29%)在妊娠晚期胎儿中呈阳性。BKV在肝脏中最常见(8例),心脏(三例),和胎盘(2例)。有些病例在胎盘中未检测到病毒,但在其他组织中检测到BKV。
    OBJECTIVE: Prior studies have shown controversial results on the vertical transmission of BK virus (BKV). The present study aimed to assess the possibility of BKV vertical transmission from mother to fetus in the product of conception (embryo, fetuses, and/or placentas) over the three stages of pregnancy.
    RESULTS: Of the 26 placental studied tissues, 6 were in the first trimester, and none of which were positive. Only one out of the 13 (7.7%) placental materials in the second trimester was positive. Only one out of 7 (14%) placental materials of the third trimester was positive. There were cases that no virus was detected in their placental but BKV was detected in their other tissues. Among 26 conceptuses, 17 (65%) were negative for BKV and 9 (34.6%) were positive, 7/13 (54%) were positive in the second, and 2/7 (29%) were positive in the third trimester fetuses. BKV was most frequently detected in the liver (eight cases), heart (three cases), and placenta (2 cases). There were cases that no virus was detected in their placental but BKV was detected in their other tissues.
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  • 文章类型: Journal Article
    野生动物在生态系统内蜱传疾病的复杂平衡中的作用至关重要,因为它们是蜱携带者的宿主和这些蜱携带的病原体的储库。本研究旨在调查野生动物中人畜共患病原菌的存在,特别是在野兔和长耳刺猬(Hemiechinusmegalofis)中,在伊朗东部地区。重点是疏螺旋体属的检测。,伯内蒂柯西拉,支原体属。,Francisellaspp.,和钩端螺旋体。,使用嵌套PCR方法。我们总共分析了124份血样,并分析了从野兔和长耳刺猬中收集的196只蜱。采用巢式PCR方法鉴定人畜共患致病菌DNA的存在。我们的研究揭示了两种野生动物物种中都存在这些人畜共患致病菌,表明它们作为携带这些病原体的蜱的宿主和储库的潜在作用。疏螺旋体属的具体存在和患病率。,伯内蒂柯西拉,支原体属。,Francisellaspp.,和钩端螺旋体。通过巢式PCR方法测定。这项研究有助于对野生动物参与蜱传疾病传播的知识有限。通过使用嵌套PCR方法,我们成功地在野兔和长耳刺猬中发现了人畜共患致病菌。这项研究强调需要进一步研究,以更好地了解蜱传疾病的生态过程,尤其是野生动物在传播中的作用。这些知识对于野生动物保护工作和蜱传疾病的管理至关重要,最终有利于动物和人类的健康。
    The role of wildlife in the complex balance of tick-borne diseases within ecosystems is crucial, as they serve as hosts for tick carriers and reservoirs for the pathogens carried by these ticks. This study aimed to investigate the presence of zoonotic pathogenic bacteria in wildlife, specifically in hares and long-eared hedgehogs (Hemiechinus megalofis), in the eastern region of Iran. The focus was on the detection of Borrelia spp., Coxiella burnetii, Anaplasma spp., Francisella spp., and Leptospira spp., using the Nested-PCR method. We analyzed a total of 124 blood samples, and 196 ticks collected from hares and long-eared hedgehogs were analyzed. The Nested-PCR method was employed to identify the presence of zoonotic pathogenic bacteria DNA. Our study revealed the presence of these zoonotic pathogenic bacteria in both wildlife species, indicating their potential role as hosts and reservoirs for the ticks carrying these pathogens. The specific presence and prevalence of Borrelia spp., Coxiella burnetii, Anaplasma spp., Francisella spp., and Leptospira spp. were determined through the Nested-PCR method. This study contributes to the limited knowledge about the involvement of wild animals in the transmission of tick-borne diseases. By using the Nested-PCR method, we successfully identified the presence of zoonotic pathogenic bacteria in hares and long-eared hedgehogs. This study emphasizes the need for further research to better understand the ecological process of tick-borne diseases, particularly the role of wildlife in their spread. Such knowledge is crucial for wildlife conservation efforts and the management of tick-borne diseases, ultimately benefiting both animal and human health.
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  • 文章类型: Journal Article
    背景:人类细小病毒B19(B19V)感染在恶性和良性病变如头颈部鳞状细胞癌(HNSCC)和口腔粘膜膨出病变中的作用尚未确定。在这里,我们检查了,第一次,来自伊朗受试者的HNSCC中B19V的存在。
    方法:使用巢式聚合酶链反应(nPCR)和TaqMan定量PCR分析了108个HNSCC样本中B19V的存在。进行免疫组织化学程序以评估B19VVP1/VP2蛋白的表达。p16INK4a,和NF-κB在肿瘤组织及其邻近的非肿瘤组织中的表达。此外,40口黏液囊肿,30个口腔颊粘膜拭子,30例健康成人鼻咽拭子作为对照进行分析.
    结果:在36.1%的HNSCC中检测到B19VDNA。Further,23.3%的HNSCC样本显示针对B19VVP1/VP2蛋白的免疫反应性。患者组和对照组之间B19VDNA阳性病例的频率存在显著差异(p<0.0001)。此外,比较肿瘤组织及其邻近的非肿瘤组织对B19V结构蛋白的免疫反应性,发现肿瘤组织与B19V感染之间存在显著关联(p<0.0001).最后,调查同时存在的B19V和高危人乳头瘤病毒(HPV)DNA,我们发现HNSCCs中这两种病毒感染之间存在显著关联(p=0.031).
    结论:总而言之,B19V经常出现在伊朗患者的HNSCC组织中,但在邻近的非肿瘤组织以及口腔粘膜膨出病变中大多不存在。颊,和健康受试者的鼻咽拭子。HPV可能有助于HNSCC组织中的B19V持续。需要额外的研究来调查B19V在HNSCC发展中的潜在病因或辅因子作用。
    BACKGROUND: The role of human parvovirus B19 (B19V) infection in malignant and benign lesions such as head and neck squamous cell carcinomas (HNSCCs) and oral mucocele lesions has not been established. Herein, we examined, for the first time, the presence of B19V in HNSCCs from Iranian subjects.
    METHODS: One hundred and eight HNSCC specimens were analyzed for the presence of B19V using nested polymerase chain reaction (nPCR) and TaqMan quantitative PCR assays. Immunohistochemistry procedures were performed to evaluate the expression of B19V VP1/VP2 proteins, p16INK4a, and NF-κB in tumor tissues and their adjacent non-tumor tissues. In addition, 40 oral mucocele, 30 oral buccal mucosa swabs, and 30 nasopharyngeal swabs obtained from healthy adults were analyzed as controls.
    RESULTS: B19V DNA was detected in 36.1% of HNSCCs. Further, 23.3% of HNSCC specimens showed immunoreactivity against B19V VP1/VP2 proteins. There was a significant difference in the frequency of B19V DNA-positive cases between the patient and control groups (p < 0.0001). Moreover, comparing tumoral tissues and their adjacent non-tumor tissues in terms of immunoreactivity against B19V structural proteins, a significant association was found between tumor tissues and B19V infection (p < 0.0001). Finally, investigating the simultaneous presence of B19V and high-risk human papillomaviruses (HPV) DNA, we found a significant association between these two viral infections in HNSCCs (p = 0.031).
    CONCLUSIONS: To sum up, B19V was frequently present in HNSCC tissues of Iranian patients but mostly absent in the adjacent non-tumor tissues as well as oral mucocele lesions, buccal, and nasopharyngeal swabs of healthy subjects. HPV possibly contributes to B19V persistence in HNSCC tissues. Additional research is required to investigate potential etiological or cofactor roles of B19V in the development of HNSCCs.
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