Crustacea

甲壳动物
  • 文章类型: Journal Article
    作为胚胎发育成功的先决条件,胚胎基因组激活(EGA)是一个重要的生物学事件,其中胚胎中的合子基因产物被激活以替代母体来源的转录本。尽管EGA已在大量脊椎动物和无脊椎动物中进行了广泛的研究,甲壳类蟹缺乏有关此事件的信息。在这项研究中,EGA的时间通过检查早期胚胎发育的转录组数据集来确认,包括成熟卵母细胞和胚胎经历六个早期发育阶段,并在泥蟹中鉴定出与EGA相关的信号通路,S、paramamosain。综合转录组数据鉴定了来自这些测序样品的总共53,915个转录物。在1细胞阶段,显著的转录组变化是明显的,由36%的转录物数量移位和转录物片段长度的减少表明,与成熟卵母细胞中存在的那些相比。同时,观察到新转录的转录物的表达大幅增加,基因计数在1细胞阶段达到3485,指示EGA的发作。GO功能富集揭示了在1细胞阶段启动的关键生物过程,例如蛋白质复合物的形成,蛋白质代谢,和各种生物合成过程。KEGG分析确定了EGA过程中激活的几个关键信号通路,包括“细胞周期”,\"\"拼接体,\"\"RNA降解\",和“RNA聚合酶”,Pathways.此外,转录因子家族,包括锌指,T-box,Nrf1和Tub主要在1细胞阶段富集,提示它们在EGA过程中通过靶向特定DNA序列调节胚胎发育中的关键作用。这项开创性的研究不仅解决了有关S.paramamosain发育生物学的重大知识空白,特别是为了理解EGA的潜在机制,而且还为S.paramamosain水产养殖中种子育种的个体同步研究提供了至关重要的科学数据。此外,它为研究其他甲壳类动物的早期胚胎发育提供了参考依据。
    As a prerequisite for the success of embryo development, embryonic genome activation (EGA) is an important biological event in which zygotic gene products in the embryo are activated to replace maternal-derived transcripts. Although EGA has been extensively studied in a large number of vertebrates and invertebrates, there is a lack of information regarding this event in crustacean crab. In this study, the timing of EGA was confirmed by examining a transcriptomic dataset of early embryonic development, including mature oocytes and embryos through six early developmental stages, and signaling pathways associated with EGA were identified in the mud crab, S. paramamosain. The comprehensive transcriptomic data identified a total of 53,915 transcripts from these sequencing samples. Notable transcriptomic change was evident at the 1-cell stage, indicated by a 36% transcript number shift and a reduction in transcript fragment length, compared to those present in the mature oocytes. Concurrently, a substantial increase in the expression of newly transcribed transcripts was observed, with gene counts reaching 3485 at the 1-cell stage, indicative of the onset of EGA. GO functional enrichment revealed key biological processes initiated at the 1-cell stage, such as protein complex formation, protein metabolism, and various biosynthetic processes. KEGG analysis identified several critical signaling pathways activated during EGA, including the \"cell cycle,\" \"spliceosome,\" \"RNA degradation\", and \"RNA polymerase\", pathways. Furthermore, transcription factor families, including zinc finger, T-box, Nrf1, and Tub were predominantly enriched at the 1-cell stage, suggesting their pivotal roles in regulating embryonic development through the targeting of specific DNA sequences during the EGA process. This groundbreaking study not only addresses a significant knowledge gap regarding the developmental biology of S. paramamosain, especially for the understanding of the mechanism underlying EGA, but also provides scientific data crucial for the research on the individual synchronization of seed breeding within S. paramamosain aquaculture. Additionally, it serves as a reference basis for the study of early embryonic development in other crustacean species.
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  • 文章类型: Journal Article
    在全球使用的海鲜中,对虾的消费需求很大。然而,这种扩展导致了虾壳废物的大量产生和处置。通过文献检索,据观察,自2020年以来,全球学者对虾壳废物及其甲壳素/壳聚糖表现出前所未有的兴趣。然而,这些新见解缺乏相应和全面的总结和分析。因此,本文详细介绍了提取方法,应用程序,以及虾壳甲壳素/壳聚糖的最新研究进展,包括微纳米衍生物,从2020年到现在。结果表明,化学提取仍然是从虾壳中提取和制备甲壳素/壳聚糖的主要技术。随着进一步的完善和发展,调整化学提取过程中的参数或采用微波和辐射等辅助技术,可以定制具有不同特性的目标产品(例如,脱乙酰度,分子量,和乙酰化程度)根据具体需要。此外,为了追求环保,高效,和温和的提取过程,最近的研究已经转向微生物发酵和绿色溶剂方法的几丁质/壳聚糖提取。除了传统的抗菌之外,成膜,和封装功能,研究壳聚糖在生物医学中的应用,食品加工,新材料,水处理,吸附场逐渐加深。甲壳素/壳聚糖衍生物及其改性产品也是近年来研究的重点。然而,随着快速扩张,几丁质/壳聚糖及其衍生物的未来发展仍然面临着与不明确的作用机制和与工业规模相关的复杂性相关的挑战。
    Shrimp consumption is in great demand among the seafood used globally. However, this expansion has resulted in the substantial generation and disposal of shrimp shell waste. Through literature search, it has been observed that since 2020, global scholars have shown unprecedented interest in shrimp shell waste and its chitin/chitosan. However, these new insights lack corresponding and comprehensive summarization and analysis. Therefore, this article provides a detailed review of the extraction methods, applications, and the latest research developments on chitin/chitosan from shrimp shells, including micro-nano derivatives, from 2020 to the present. The results indicate that chemical extraction remains the primary technique for the extraction and preparation of chitin/chitosan from shrimp shells. With further refinement and development, adjusting parameters in the chemical extraction process or employing auxiliary techniques such as microwave and radiation enable the customization of target products with different characteristics (e.g., deacetylation degree, molecular weight, and degree of acetylation) according to specific needs. Additionally, in pursuit of environmentally friendly, efficient, and gentle extraction processes, recent research has shifted toward microbial fermentation and green solvent methods for chitin/chitosan extraction. Beyond the traditional antibacterial, film-forming, and encapsulation functionalities, research into the applications of chitosan in biomedical, food processing, new materials, water treatment, and adsorption fields is gradually deepening. Chitin/chitosan derivatives and their modified products have also been a focal point of research in recent years. However, with the rapid expansion, the future development of chitin/chitosan and its derivatives still faces challenges related to the unclear mechanism of action and the complexities associated with industrial scale-up.
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  • 文章类型: Journal Article
    甲壳类动物,如虾和蟹,在海洋生态系统中具有重要的生态意义和巨大的经济价值。然而,近几十年来,它们对疾病爆发和病原体感染的易感性对生产构成了重大挑战。作为无脊椎动物,甲壳类动物主要依靠先天免疫系统进行防御,缺乏脊椎动物的适应性免疫系统.黏膜免疫,作为抵御无数病原微生物的前线防御,是他们免疫库的一个关键方面。这篇综述综合了比较免疫学的见解,强调脊椎动物粘膜免疫和无脊椎动物先天免疫机制之间的相似之处。尽管缺乏经典的适应性免疫,无脊椎动物,包括甲壳类动物,表现出免疫记忆,并依靠固有的“先天免疫因子”来对抗入侵的病原体。利用哺乳动物和鱼系统的相似之处,本文详细探讨了粘膜免疫在调节甲壳类动物免疫反应中的复杂作用。通过从哺乳动物和鱼类等经过充分研究的模型中推断,这篇综述推断了甲壳类动物黏膜免疫的潜在机制,并为甲壳类动物黏膜免疫的研究提供了见解。
    Crustaceans such as shrimps and crabs, hold significant ecological significance and substantial economic value within marine ecosystems. However, their susceptibility to disease outbreaks and pathogenic infections has posed major challenges to production in recent decades. As invertebrate, crustaceans primarily rely on their innate immune system for defense, lacking the adaptive immune system found in vertebrates. Mucosal immunity, acting as the frontline defense against a myriad of pathogenic microorganisms, is a crucial aspect of their immune repertoire. This review synthesizes insights from comparative immunology, highlighting parallels between mucosal immunity in vertebrates and innate immune mechanisms in invertebrates. Despite lacking classical adaptive immunity, invertebrates, including crustaceans, exhibit immune memory and rely on inherent \"innate immunity factors\" to combat invading pathogens. Drawing on parallels from mammalian and piscine systems, this paper meticulously explores the complex role of mucosal immunity in regulating immune responses in crustaceans. Through the extrapolation from well-studied models like mammals and fish, this review infers the potential mechanisms of mucosal immunity in crustaceans and provides insights for research on mucosal immunity in crustaceans.
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  • 文章类型: Journal Article
    海水和沉积物中的潜在有毒元素(PTE)可能会沿着水生食物链放大,对人类的健康构成威胁。本研究全面分析了浓度,分布,潜在来源,和多媒体中7种PTE的健康风险(海水,中国南方典型亚热带海湾的沉积物和生物)。结果表明,锌是海水中含量最高的元素,沉积物中Cd的平均浓度是背景值的3.93倍。除了As,表层海水的季节差异不显著。鱼类中锌的含量,甲壳类动物,贝类是最高的,汞和镉的含量相对较低。生物积累因子表明锌是海水中一种强生物积累的元素,沉积物中的水生生物对Cd的富集程度更高。根据主成分分析(PCA),和正矩阵分解(PMF),泉州湾PTE的主要来源是自然来源,工业污水排放,和农业投入,每个贡献40.4%,24.2%,和35.4%,分别。这项研究为防止亚热带海湾中的PTEs污染提供了基本和重要的信息,促进生态安全,以及海产品中PTE对人体健康风险的评估。
    Potentially toxic elements (PTEs) in seawater and sediments may be amplified along the aquatic food chain, posing a health threat to humans. This study comprehensively analyzed the concentrations, distribution, potential sources, and health risk of 7 PTEs in multimedia (seawater, sediment and organism) in typical subtropical bays in southern China. The results indicated that Zn was the most abundant element in seawater, and the average concentration of Cd in sediment was 3.93 times higher than the background value. Except for As, the seasonal differences in surface seawater were not significant. The content of Zn in fishes, crustacea, and shellfish was the highest, while the contents of Hg and Cd were relatively low. Bioaccumulation factor indicated that Zn was a strongly bioaccumulated element in seawater, while Cd was more highly enriched by aquatic organisms in sediment. According to principal component analysis (PCA), and positive matrix factorization (PMF), the main sources of PTEs in Quanzhou Bay were of natural derivation, industrial sewage discharge, and agricultural inputs, each contributing 40.4 %, 24.2 %, and 35.4 %, respectively. This study provides fundamental and significant information for the prevention of PTEs contamination in subtropical bays, the promotion of ecological safety, and the assessment of human health risk from PTEs in seafood.
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  • 文章类型: Journal Article
    纳米塑料(NPs)已成为水生生态系统中普遍存在的污染物,获得显著的研究兴趣。尽管如此,有限的研究已经解决了与不同粒径的PS-NP(聚苯乙烯纳米塑料)相关的毒性机制。在这次调查中,遗传毒性,增长模式,肝胰腺损伤,淡水虾Neocaridinapalmata的肠道菌群变化(Shen1948),进行35天的PS-NP暴露(此实验使用两种尺寸的PS-NP:75nm和200nm,并设定了五个浓度:0mg/L,0.5mg/L,2.5mg/L,5mg/L,和10mg/L浓度PS-NP浓度使用RNA测序检查,组织病理学分析,酶活性评估,和16SrRNA测序。在暴露于不同PS-NP大小的组中鉴定了差异表达基因(DEGs)的值得注意的变化。我们观察到PS-NP主要促进细胞成分相关过程,并通过线粒体途径诱导跨组织的细胞凋亡和氧化应激。虽然200nm-PS-NP在荧光强度方面比75nm-PS-NP强,75nm-PS-NP比200nm-PS-NP更可能促进细胞凋亡。PS-NP阻碍了N.palmata的标准能量供应,可能导致身长和体重下降。此外,PS-NP对肠上皮和肝胰腺组织造成损害,并显着改变了肠道微生物群落结构。具体来说,PS-NP诱导的肠道损伤的标志是一些益生菌(特别是乳杆菌)的下降和病原菌的激增。此外,用乳杆菌补充掌型N.palmata似乎改善了氧化应激并增强了能量代谢。我们的发现为甲壳类动物在受到PS-NP作用时的毒性机制以及不同PS-NP大小对陆地生态系统构成的潜在风险提供了宝贵的见解。
    Nano-plastics (NPs) have emerged as prevalent contaminants in aquatic ecosystems, gaining significant research interest. Nonetheless, limited research has addressed the toxicity mechanisms associated with PS-NPs (polystyrene nanoplastics) of varying particle sizes. In this investigation, genotoxicity, growth patterns, hepatopancreatic damage, and intestinal flora alterations in freshwater shrimp Neocaridina palmata (Shen 1948), subjected to 35 days PS-NPs exposure (two size PS-NPs: 75 nm and 200 nm were used for this experiment, and five concentrations were set: 0 mg/L, 0.5 mg/L, 2.5 mg/L, 5 mg/L, and 10 mg/L concentrations PS-NP concentrations were examined using RNA sequencing, histopathological analyses, enzyme activity assessments, and 16S rRNA sequencing. Noteworthy variations in differentially expressed genes (DEGs) were identified across groups exposed to different PS-NPs sizes. We observed that PS-NPs predominantly instigated cellular component-related processes and induced apoptosis and oxidative stress across tissues via the mitochondrial pathway. Although the 200 nm-PS-NPs are stronger than the 75 nm-PS-NPs in terms of fluorescence intensity, 75 nm-PS-NPs are more likely to promote apoptosis than 200 nm-PS-NPs. PS-NPs impeded standard energy provision in N. palmata, potentially contributing to decreased body length and weight. Moreover, PS-NPs inflicted damage on intestinal epithelial and hepatopancreatic tissues and significantly modified intestinal microbial community structures. Specifically, PS-NPs-induced intestinal damage was marked by a decline in some probiotics (notably Lactobacilli) and a surge in pathogenic bacteria. Moreover, supplementing N. palmata with Lactobacilli appeared ameliorate oxidative stress and strengthen energy metabolism. Our findings provided valuable insights into crustacean toxicity mechanisms when subjected to PS-NPs and the potential risks that different PS-NPs sizes posed to terrestrial ecosystems.
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  • 文章类型: Journal Article
    我们报告了来自地中海的非土著无脊椎动物的新数据(4个ostracods和20个软体动物),包括该盆地的五项新记录:近生动物Neomonoceratinainiqua,Neomonoceratinaaff.地中海,Neomonoceratinacf.熵,Loxoconchacf.gisellae(节肢动物:甲壳类动物)-地中海非本地陆生动物的第一个记录-和双壳类动物。对称(软体动物)。此外,我们首次报道了来自以色列的Electromavexillum,和库尔酶菌,Joculatorproblematicus,半特例,Pyrgulina娜娜,Pyrgulina微型块茎,Turbonillacangeyrani,AffMusculusaff.来自塞浦路斯的viridulus和Isignomon双色。我们还报告了Fossarussp的第二个记录。和Cerithiopsissp.cf.在地中海,来自塞浦路斯的Oscillagalilae的第一批活标本,以及以色列(和地中海)最北端的Garipallida记录。此外,我们报道了RugalucinaAngela的最早记录,地中海的Erviliascaliola和Alveinusmiliaceus,将它们在盆地的第一次出现追溯到3年、5年和7年,分别。我们提供了有关Spondylusnicobaricus和Nudiscintillaaff存在的新数据。glabra在以色列。最后,但重要的是,我们使用形态学和分子方法来修改地中海非本地Isognomon属的系统学,表明该盆地目前有两种物种共存:加勒比I.双色,分布在地中海中部和东部,还有印度太平洋I.aff.legumen,目前仅从地中海东部报道,其身份需要更深入的分类学研究。我们的工作表明需要分类学专业知识和调查,当NIS属于没有充分的分类学工作的分类单元时,有必要避免封闭命名法中的名称所赋予的毫无根据的自信感,以及必须继续收集样本,而不是依靠视觉普查和生物闪电战,以便能够准确检测非土著物种。
    We report new data on non-indigenous invertebrates from the Mediterranean Sea (four ostracods and 20 molluscs), including five new records for the basin: the ostracods Neomonoceratina iniqua, Neomonoceratina aff. mediterranea, Neomonoceratina cf. entomon, Loxoconcha cf. gisellae (Arthropoda: Crustacea)-the first records of non-indigenous ostracods in the Mediterranean-and the bivalve Striarca aff. symmetrica (Mollusca). Additionally, we report for the first time Electroma vexillum from Israel, and Euthymella colzumensis, Joculator problematicus, Hemiliostraca clandestina, Pyrgulina nana, Pyrgulina microtuber, Turbonilla cangeyrani, Musculus aff. viridulus and Isognomon bicolor from Cyprus. We also report the second record of Fossarus sp. and of Cerithiopsis sp. cf. pulvis in the Mediterranean Sea, the first live collected specimens of Oscilla galilae from Cyprus and the northernmost record of Gari pallida in Israel (and the Mediterranean). Moreover, we report the earliest records of Rugalucina angela, Ervilia scaliola and Alveinus miliaceus in the Mediterranean Sea, backdating their first occurrence in the basin by 3, 5 and 7 years, respectively. We provide new data on the presence of Spondylus nicobaricus and Nudiscintilla aff. glabra in Israel. Finally, yet importantly, we use both morphological and molecular approaches to revise the systematics of the non-indigenous genus Isognomon in the Mediterranean Sea, showing that two species currently co-occur in the basin: the Caribbean I. bicolor, distributed in the central and eastern Mediterranean, and the Indo-Pacific I. aff. legumen, at present reported only from the eastern Mediterranean and whose identity requires a more in-depth taxonomic study. Our work shows the need of taxonomic expertise and investigation, the necessity to avoid the unfounded sense of confidence given by names in closed nomenclature when the NIS belong to taxa that have not enjoyed ample taxonomic work, and the necessity to continue collecting samples-rather than relying on visual censuses and bio-blitzes-to enable accurate detection of non-indigenous species.
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  • 文章类型: Journal Article
    甲壳动物贝类是东亚的主要过敏原。在本研究中,甲壳类动物的一种主要过敏性蛋白质,原肌球蛋白,使用基于多反应监测模式的质谱,具有通过蛋白质组学分析鉴定的共享特征肽。通过热稳定性和酶消化效率对肽进行了筛选,以提高所开发方法的适用性和准确性。最后,该方法的线性范围为0.15至30mgTM/kgfood(R2>0.99),检测限为0.15mgTM/kg食品,定量限为0.5mgTM/kg食品,并成功应用于商业加工食品,比如薯片,饼干,鱼糜,和火锅调味料,这证明了基于蛋白质组学的方法在食物过敏原分析中的适用性。
    Crustacean shellfish are major allergens in East Asia. In the present study, a major allergic protein in crustaceans, tropomyosin, was detected accurately using multiple reaction monitoring mode-based mass spectrometry, with shared signature peptides identified through proteomic analysis. The peptides were deliberately screened through thermal stability and enzymatic digestion efficiency to improve the suitability and accuracy of the developed method. Finally, the proposed method demonstrated a linear range of 0.15 to 30 mgTM/kgfood (R2 > 0.99), with a limit of detection of 0.15 mgTM/kg food and a limit of quantification of 0.5mgTM/kgfood and successfully applied to commercially processed foods, such as potato chips, biscuits, surimi, and hot pot seasonings, which evidenced the applicability of proteomics-based methodology for food allergen analysis.
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  • 文章类型: Journal Article
    甲壳素寡糖(CTOS)在食品中具有潜在的应用,医学,和农业。然而,较低的传质和催化效率是由虾壳废物(SSW)和结晶甲壳素生产CTOS的主要动力学限制。通常采用化学或物理方法进行预处理,以提高几丁质酶的水解效率,但这并不环保和划算。为了应对这一挑战,制造了具有液-固系统的几丁质酶纳米反应器(BcChiA1@ZIF-8),以促进SSW和结晶几丁质的一步降解。与游离酶相比,BcChiA1@ZIF-8对胶体甲壳素的催化效率显著提高至142%。SSW和结晶几丁质可以被BcChiA1@ZIF-8直接降解,无需任何预处理。N的产量,来自SSW的N'-二乙酰壳二糖[(GlcNAc)2]和来自结晶几丁质的N-乙酰-D-氨基葡萄糖(GlcNAc)是游离酶的2倍和3.1倍,分别。原因是BcChiA1@ZIF-8采用液固体系扩大了界面面积,增加了酶和底物之间的碰撞频率,提高了几丁质酶的大底物结合活性。此外,两相系统表现出优异的稳定性,设计具有普遍适用性。该策略为其他多糖生物合成和将环境废物转化为碳水化合物提供了新的指导。
    Chitin oligosaccharides (CTOS) possess potential applications in food, medicine, and agriculture. However, lower mass transfer and catalytic efficiency are the main kinetic limitations for the production of CTOS from shrimp shell waste (SSW) and crystalline chitin. Chemical or physical methods are usually used for pretreatment to improve chitinase hydrolysis efficiency, but this is not eco-friendly and cost-effective. To address this challenge, a chitinase nanoreactor with the liquid-solid system (BcChiA1@ZIF-8) was manufactured to boost the one-step degradation of SSW and crystalline chitin. Compared with free enzyme, the catalytic efficiency of BcChiA1@ZIF-8 on colloidal chitin was significantly improved to 142 %. SSW and crystalline chitin can be directly degraded by BcChiA1@ZIF-8 without any pretreatments. The yield of N, N\'-diacetylchitobiose [(GlcNAc)2] from SSW and N-acetyl-D-glucosamine (GlcNAc) from crystalline chitin was 2 times and 3.1 times than that of free enzyme, respectively. The reason was that BcChiA1@ZIF-8 with a liquid-solid system enlarged the interface area, increased the collision frequency between enzyme and substrate, and improved the large-substrates binding activity of chitinase. Moreover, the biphasic system exhibited excellent stability, and the design showed universal applicability. This strategy provided novel guidance for other polysaccharide biosynthesis and the conversion of environmental waste into carbohydrates.
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  • 文章类型: Journal Article
    在这项研究中,合成了具有良好水分散性的聚乙烯吡咯烷酮-茜素纳米颗粒(PVP-AZNPs)和具有聚集体诱导发射效应的碳量子点(RQDs),以构建用于食品新鲜度监测的生态友好型薄膜。PVP-AZNPs和RQDs的引入增强了木薯淀粉/聚乙烯醇薄膜的网络结构和热稳定性,并通过与成膜基质的非共价结合降低其结晶度和透光率。显影的薄膜在0.025-25mg/mL时对氨表现出视觉上可识别的比色和荧光响应,它可以重复使用至少6次。实际应用实验证明,作为指标标签,可以达到准确,实时,和对在25°C下储存的虾的新鲜度进行视觉动态监测,4°C,并且在日光(橙黄色至紫色)和UV光(红色至蓝色)下-20°C。多变量检测技术的集成,可以通过自校正消除外界因素的干扰,提高灵敏度和可靠性,为其他食品质量安全监控平台的开发提供参考。
    In this study, the polyvinylpyrrolidone-alizarin nanoparticles (PVP-AZ NPs) with favorable water dispersion and the carbon quantum dots (RQDs) with aggregate induced emission effect were synthesized to construct an eco-friendly film for food freshness monitoring. The introduction of PVP-AZ NPs and RQDs enhanced the network structure and thermal stability of the cassava starch/polyvinyl alcohol film, and reduced its crystallinity and light transmittance via non-covalent binding with the film-forming matrix. The developed film exhibited visually recognizable colorimetric and fluorescent responses to ammonia at 0.025-25 mg/mL, and it can be reused at least 6 times. Practical application experiment proved that the film, as an indicator label, can achieve accurate, real-time, and visual dynamic monitoring of the freshness of shrimp stored at 25 °C, 4 °C, and - 20 °C under daylight (orange yellow to purple) and UV light (red to blue). The integration of multivariate detection technology can eliminate the interference of external factors by self-correction to improve sensitivity and reliability, which provides a reference for the development of other food quality and safety monitoring platforms.
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  • 文章类型: Journal Article
    本研究采用综合方法结合宏基因组分析和细菌分离来阐明微生物组成,抗生素抗性基因(ARGs),以及来自市场和超市的虾中存在的毒力因子(VFGs)。对虾的宏基因组分析显示,变形杆菌和拟杆菌占主导地位,其中某些样品中的Firmicutes明显富集。另一方面,分离的优势细菌包括门路柠檬酸杆菌,大肠杆菌,肠沙门氏菌,弧菌和肺炎克雷伯菌。宏基因组分析揭示了虾样品中ARGs的23种主要类型和380种亚型,包括许多临床上有意义的ARGs,如blaKPC,blaNDM,mcr,tet(X4)等.分离细菌菌株的基因组分析鉴定出14种ARG类型,具有109种亚型基因,补充了宏基因组数据。基因组分析还使我们能够鉴定出丰富的MDR质粒,这提供了对同一样品中不同种类细菌中抗性基因传播的进一步见解。对宏基因组和细菌基因组中的VFG和移动遗传元件(MGEs)的检查揭示了导致细菌毒力和遗传移动性的复杂因素。人类病原菌中ARGs和VFGs的潜在共存模式强调了抗生素耐药性和毒力之间的复杂相互作用。总之,这项综合分析首次提供了全面的观点,并为市场上虾产品的潜在危害提供了新的思路。研究结果强调了持续监测和干预策略的必要性,以使用新的综合方法减轻食品供应链中抗生素抗性细菌带来的风险。
    This study employs a comprehensive approach combining metagenomic analysis and bacterial isolation to elucidate the microbial composition, antibiotic resistance genes (ARGs), and virulence factors (VFGs) present in shrimps from market and supermarket. Metagenomic analysis of shrimps revealed a dominance of Proteobacteria and Bacteroidetes with Firmicutes notably enriched in some samples. On the other hand, the dominant bacteria isolated included Citrobacter portucalensis, Escherichia coli, Salmonella enterica, Vibrio species and Klebsiella pneumonaie. Metagenomic analysis unveiled a diverse spectrum of 23 main types and 380 subtypes of ARGs in shrimp samples including many clinical significant ARGs such as blaKPC, blaNDM, mcr, tet(X4) etc. Genomic analysis of isolated bacterial strains identified 14 ARG types with 109 subtype genes, which complemented the metagenomic data. Genomic analysis also allowed us to identify a rich amount of MDR plasmids, which provided further insights into the dissemination of resistance genes in different species of bacteria in the same samples. Examination of VFGs and mobile genetic elements (MGEs) in both metagenomic and bacterial genomes revealed a complex landscape of factors contributing to bacterial virulence and genetic mobility. Potential co-occurrence patterns of ARGs and VFGs within human pathogenic bacteria underlined the intricate interplay between antibiotic resistance and virulence. In conclusion, this integrated analysis for the first time provides a comprehensive view and sheds new light on the potential hazards associated with shrimp products in the markets. The findings underscore the necessity of ongoing surveillance and intervention strategies to mitigate risks posed by antibiotic-resistant bacteria in the food supply chain using the novel comprehensive approaches.
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