Vitamin K 2

维生素 K 2
  • 文章类型: Journal Article
    A Gram-stain-negative, yellow-pigmented, and facultatively aerobic bacterium, designated strain GPA1T, was isolated from plastic waste landfill soil in the Republic of Korea. The cells were non-motile short rods exhibiting oxidase-negative and catalase-positive activities. Growth was observed at 15-40 °C (optimum, 30 °C), at pH 6.0-9.0 (optimum, pH 7.0-8.0) and in the presence of 0-2.5 % (w/v) NaCl (optimum, 0 %). Menaquinone-7 was the sole respiratory quinone, and iso-C15 : 0, C16 : 1  ω5c, and iso-C17 : 0 3-OH were the major cellular fatty acids (>10 % of the total fatty acids). Phosphatidylethanolamine was identified as a major polar lipid. Phylogenetic analyses based on 16S rRNA gene sequences and 120 concatenated marker protein sequences revealed that strain GPA1T formed a distinct lineage within the genus Chitinophaga. The genome of strain GPA1T was 6078 kb in size with 53.8 mol% G+C content. Strain GPA1T exhibited the highest similarity to Chitinophaga rhizosphaerae T16R-86T, with a 98.6 % 16S rRNA gene sequence similarity, but their average nucleotide identity and digital DNA-DNA hybridization values were 82.5 and 25.9 %, respectively. Based on its phenotypic, chemotaxonomic, and phylogenetic characteristics, strain GPA1T represents a novel species of the genus Chitinophaga, for which the name Chitinophaga pollutisoli sp. nov. is proposed. The type strain is GPA1T (=KACC 23415T=JCM 36644T).
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  • 文章类型: Journal Article
    革兰氏染色阳性,杆状,有氧,活动细菌,J379T,是从位于捷克共和国以前的银铀矿中的放射性水泉C1中分离出来的。这种缓慢生长的菌株在24-28°C下在〈1%盐浓度和碱性pH8-10的固体培养基上表现出最佳生长。在菌株J379T中发现的唯一呼吸醌是MK-7(H4)。C18:1ω9c(60.9%),C18:0(9.4%),发现C16:0和醇-C18:0(均为6.2%)是主要的脂肪酸。肽聚糖含有直接交联的内消旋二氨基庚二酸。基于16SrRNA基因序列和核心基因组分析的系统发育重建表明,菌株J379T在最近修订的Solirubrobacterales顺序中形成了单独的系统发育谱系。菌株J379T与Solirubrobactericales的其他成员之间的16SrRNA基因序列的比较显示<96%的相似性。该分析表明,最接近的菌株是卡文细小杆菌D16/0/H6T(95.2%),细小细菌0166_1T(94.9%)和阿维氏杆菌属KV-962T(94.5%)。全基因组分析表明,最接近的菌株是BaekduiasoliBR7-21T,平均核苷酸同一性为78%,平均氨基酸同一性为63.2%,保守蛋白百分比为48.2%。J379T基因组DNA的G+C含量为71.7mol%。根据系统发育和系统发育数据,以及它的生理特征,菌株J379T被提议代表一种深渊丝裂菌的类型菌株(DSM113746T=CCM9300T)。11月。sp.11月。在百度科。
    A Gram-stain-positive, rod-shaped, aerobic, motile bacterium, J379T, was isolated from radioactive water spring C1, located in a former silver-uranium mine in the Czech Republic. This slow-growing strain exhibited optimal growth at 24-28 °C on solid media with <1 % salt concentration and alkaline pH 8-10. The only respiratory quinone found in strain J379T was MK-7(H4). C18 : 1 ω9c (60.9 %), C18 : 0 (9.4 %), C16 : 0 and alcohol-C18 : 0 (both 6.2 %) were found to be the major fatty acids. The peptidoglycan contained directly cross-linked meso-diaminopimelic acid. Phylogenetic reconstruction based on the 16S rRNA gene sequences and the core-genome analysis revealed that strain J379T forms a separate phylogenetic lineage within the recently amended order Solirubrobacterales. A comparison of the 16S rRNA gene sequences between strain J379T and other members of the order Solirubrobacterales showed <96 % similarity. This analysis revealed that the closest type strains were Parviterribacter kavangonensis D16/0 /H6T (95.2 %), Capillimicrobium parvum 0166_1T (94.9 %) and Conexibacter arvalis KV-962T (94.5 %). Whole-genome analysis showed that the closest type strain was Baekduia soli BR7-21T with an average nucleotide identity of 78 %, average amino acid identity of 63.2 % and percentage of conserved proteins of 48.2 %. The G+C content of the J379T genomic DNA was 71.7 mol%. Based on the phylogenetic and phylogenomic data, as well as its physiological characteristics, strain J379T is proposed to represent a type strain (DSM 113746T=CCM 9300T) of Svornostia abyssi gen. nov. sp. nov. within the family Baekduiaceae.
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  • 文章类型: Journal Article
    从日本处理城市污水的活性污泥池中分离出两种粘细菌菌株(KH5-1T和NO1)。根据蜂群菌落和子实体的表型特征,这些菌株被认为是粘细菌。使用16SrRNA基因进行的系统发育分析显示,菌株KH5-1T和NO1与头球菌属相关,最近的邻居是红球菌AB043AT(99.77%和99.84%,分别)。使用直系同源平均核苷酸同一性(orthoANI)和数字DNA-DNA杂交相似性(dDDH)与菌株KH5-1T和NO1及其在Corallococusspp中的系统发育近亲进行基因组比较。低于门槛。菌株KH5-1T和NO1的主要细胞脂肪酸为iso-C15:0(31.9%,30.0%),求和特征3(包括C16:1ω7c和/或C16:1ω6c)(20.2%,17.7%),和iso-C17:0(12.1%,14.8%),发现主要的呼吸醌是甲基萘醌(MK)-8。根据表型,化学分类学,和系统发育证据,菌株KH5-1T和NO1代表了球菌属的新物种,建议的名称是caeni珊瑚。11月。菌株类型为KH5-1T(=NCIMB15510T=JCM36609T)。
    Two myxobacterial strains (KH5-1T and NO1) were isolated from the activated sludge tanks treating municipal sewage wastewater in Japan. These strains were recognised as myxobacteria based on their phenotypic characteristics of swarming colonies and fruiting bodies. Phylogenetic analyses using the 16S rRNA gene revealed that strains KH5-1T and NO1 were affiliated with the genus Corallococcus, with the closest neighbours being Corallococcus exercitus AB043AT (99.77% and 99.84%, respectively). Genome comparisons using orthologous average nucleotide identity (orthoANI) and digital DNA-DNA hybridisation similarity (dDDH) with strains KH5-1T and NO1 and their phylogenetically close relatives in Corallococcus spp. were below the thresholds. The major cellular fatty acids of strains KH5-1T and NO1 were iso-C15:0 (31.9%, 30.0%), summed feature 3 (comprising C16:1ω7c and/or C16:1ω6c) (20.2%, 17.7%), and iso-C17:0 (12.1%, 14.8%), and the major respiratory quinone was found to be menaquinone (MK)-8. Based on the phenotypic, chemotaxonomic, and phylogenetic evidence, strains KH5-1T and NO1 represent a new species in the genus Corallococcus, for which the proposed name is Corallococcus caeni sp. nov. The type strain is KH5-1T (= NCIMB 15510T = JCM 36609T).
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  • 文章类型: Journal Article
    两个革兰氏染色阴性,杆状,不活动,严格的有氧菌株,形成黄色菌落,命名为F6058T和S2608T,从威海收集的海洋沉积物中分离出来,公关中国。两种菌株均在4-40°C下生长(最佳,30-33°C),pH6.0-7.5(最佳,pH6.5)和在0-7.0%(w/v)NaCl存在下。菌株F6058T和S2608T的最佳NaCl浓度分别为2.0%和2.5%,分别。16SrRNA基因序列的系统发育分析表明,菌株F6058T和S2608T与Aequorivita属的成员共享进化谱系。分离株的16SrRNA基因序列相似性为96.7%。菌株F6058T与小石子F64183T的16SrRNA基因序列相似性最高(98.8%),S2608T与水牛A71T最相似(96.9%)。Iso-C15:0,anteiso-C15:0和iso-C17:03-OH是菌株F6058T和S2608T的主要脂肪酸。两种分离物的唯一呼吸醌是甲基萘醌6(MK-6)。分离物的极性脂质分布均由磷脂酰乙醇胺和磷酸糖脂组成;然而,菌株F6058T表现出一种糖脂,一种氨基脂质和两种未知的极性脂质,菌株S2608T还具有两种糖脂和一种未鉴定的极性脂质。菌株F6058T和S2608T的DNAGC含量分别为34.6%和37.7mol%,分别。根据他们的表型,化学分类学和基因组特征,菌株F6058T和S2608T被认为代表了Aequorivita属的新物种,名称为Aequorivitasediminissp。11月。和Aequorivitamarinasp.11月。被提议。菌株类型为F6058T(=KCTC92653T=MCCC1H01358T)和S2608T(KCTC92652T=MCCC1H01361T)。
    Two Gram-stain-negative, rod-shaped, non-motile, strictly aerobic strains, forming yellow colonies and designated F6058T and S2608T, were isolated from marine sediment collected in Weihai, PR China. Both strains grow at 4-40 °C (optimum, 30-33 °C), pH 6.0-7.5 (optimum, pH 6.5) and in the presence of 0-7.0 % (w/v) NaCl. The optimum NaCl concentrations for strains F6058T and S2608T were 2.0 % and 2.5 %, respectively. Phylogenetic analysis of the 16S rRNA gene sequences indicated that strains F6058T and S2608T share an evolutionary lineage with members of the genus Aequorivita. The isolates exhibited a 16S rRNA gene sequence similarity of 96.7 % to each other. Strains F6058T exhibited the highest 16S rRNA gene sequence similarity to Aequorivita xiaoshiensis F64183T (98.8 %), and S2608T was most similar to Aequorivita capsosiphonis A71T (96.9 %). Iso-C15:0, anteiso-C15:0 and iso-C17:0 3-OH were the major fatty acids of strains F6058T and S2608T. The sole respiratory quinone of both isolates was menaquinone 6 (MK-6). The polar lipid profiles of the isolates both consisted of phosphatidylethanolamine and phosphoglycolipids; however, strain F6058T exhibited one glycolipid, one aminolipid and two unidentified polar lipids, and strain S2608T also had two glycolipids and one unidentified polar lipid. The DNA G+C contents of strains F6058T and S2608T were 34.6 % and 37.7 mol%, respectively. Based on their phenotypic, chemotaxonomic and genomic characteristics, strains F6058T and S2608T were considered to represent novel species of the genus Aequorivita, for which the names Aequorivita sediminis sp. nov. and Aequorivita marina sp. nov. were proposed. The type strains are F6058T (=KCTC 92653T=MCCC 1H01358T) and S2608T (KCTC 92652T=MCCC 1H01361T).
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  • 文章类型: Journal Article
    两个革兰氏染色阳性,有氧,氧化酶和过氧化氢酶阴性,不活动,和短杆状放线菌,命名为SYSUT00b441T和SYSUT00b490,是从广东省滩涂沉积物中分离出来的,公关中国。16SrRNA基因序列相似性,SYSUT00b441T和SYSUT00b490之间的平均核苷酸同一性(ANI)和数字DNA-DNA杂交(dDDH)值分别为99.3%,99.5%和97.1%,分别。菌株SYSUT00b441T和SYSUT00b490表现出与放线菌CF5-4T最高的16SrRNA基因序列相似性(97.1%/98.2%),ANI值为74.01/73.88%,dDDH值为20.5/20.4%。在系统发育树中,这两个分离株与放线菌属有关。菌株SYSUT00b441T和SYSUT00b490的基因组分别为3.31和3.34Mb,两者的DNAG+C含量均为72.8mol%,编码3077和3085个CDS,三个和三个rRNA基因,53和51个tRNA,分别。生长发生在15-40°C(最佳,28-30°C),pH4.0-10.0(最佳,7.0),并且在0-7%(w/v)NaCl存在下(最佳,3%)。菌株SYSUT00b441T和SYSUT00b490的主要脂肪酸(>10%)为antiso-C15:0和C16:0。主要的呼吸醌被鉴定为MK-10(H4)。菌株SYSUT00b441T和SYSUT00b490的极性脂质为二磷脂酰甘油,磷脂酰甘油,磷酸糖脂,磷脂酰乙醇胺,两种磷脂酰肌醇甘露糖苷,两种糖脂和两种磷脂。基于这些数据,这两个菌株(SYSUT00b441T和SYSUT00b490)代表放线菌属的一种新物种,其名称为Actinotalealentasp。nov被提议。菌株类型为SYSUT00b441T(=GDMCC1.3827T=KCTC49943T)。
    Two Gram-stain-positive, aerobic, oxidase- and catalase-negative, non-motile, and short rod-shaped actinomycetes, named SYSU T00b441T and SYSU T00b490, were isolated from tidal flat sediment located in Guangdong province, PR China. The 16S rRNA gene sequence similarity, average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values between SYSU T00b441T and SYSU T00b490 were 99.3, 99.5 and 97.1 %, respectively. Strains SYSU T00b441T and SYSU T00b490 exhibited the highest 16S rRNA gene sequence similarities to Actinotalea ferrariae CF 5-4T (97.1 %/98.2 %), with ANI values of 74.01/73.88 % and dDDH values of 20.5/20.4 %. In the phylogenomic tree, the two isolates were affiliated with the genus Actinotalea. The genomes of strains SYSU T00b441T and SYSU T00b490 were 3.31 and 3.34 Mb, and both had DNA G+C contents of 72.8 mol%, coding 3077 and 3085 CDSs, three and three rRNA genes, and 53 and 51 tRNAs, respectively. Growth occurred at 15-40 °C (optimum, 28-30 °C), pH 4.0-10.0 (optimum, 7.0) and in the presence of 0-7 % (w/v) NaCl (optimum, 3 %). The major fatty acids (>10  %) of strains SYSU T00b441T and SYSU T00b490 were anteiso-C15 : 0 and C16 : 0. The major respiratory quinone was identified as MK-10(H4). The polar lipids of strains SYSU T00b441T and SYSU T00b490 were diphosphatidyl glycerol, phosphatidylglycerol, phosphoglycolipid, phosphatidyl ethanolamine, two phosphatidylinositol mannosides, two glycolipids and two phospholipids. Based on these data, the two strains (SYSU T00b441T and SYSU T00b490) represent a novel species of the genus Actinotalea, for which the name Actinotalea lenta sp. nov is proposed. The type strain is SYSU T00b441T (=GDMCC 1.3827T=KCTC 49943T).
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  • 文章类型: Journal Article
    革兰氏染色阳性,杆状细菌,指定为HLT2-17T,从四川海螺沟冰川的土壤样本中分离出来,公关中国。菌株HLT2-17T能够在4-25°C和在0至2%(w/v)的NaCl浓度范围内生长。16SrRNA基因序列相似性水平最高的是彭振荣磷菌M0-14T(98.3%)和彭振荣磷菌LRZ-2T(98.2%)。HLT2-17T菌株及其近亲之间的平均核苷酸同一性和数字DNA-DNA杂交值,P.磷积累M0-14T和P.siccaLRZ-2T,分别为80.0-84.0%和23.3-27.7%,分别。系统基因组分析表明,菌株HLT2-17T与菌株P.phosphoracracansM0-14T和P.siccaLRZ-2T聚集在一起。菌株HLT2-17T含有C16:0和anteiso-C15:0作为主要脂肪酸,和MK-9(H4)作为甲基萘醌。因此,基于多相方法,我们认为菌株HLT2-17T(=CGMCC1.11116T=NBRC110443T)代表了彭珍怪菌属的一种新物种,并建议名称为Pengzhenrongellafrigidasp。11月。
    A Gram-stain-positive, rod-shaped bacterium, designated as HLT2-17T, was isolated from soil sample taken from the Hailuogou glacier in Sichuan province, PR China. Strain HLT2-17T was capable of growing at 4-25°C and in NaCl concentrations ranging from 0 to 2% (w/v). The highest level of 16S rRNA gene sequence similarity was observed with Pengzhenrongella phosphoraccumulans M0-14T (98.3 %) and Pengzhenrongella sicca LRZ-2T (98.2 %). The average nucleotide identity and digital DNA-DNA hybridization values between strain HLT2-17T and its closest relatives, P. phosphoraccumulans M0-14T and P. sicca LRZ-2T, were 80.0-84.0 % and 23.3-27.7 %, respectively. Phylogenomic analysis indicated that strain HLT2-17T clustered together with strains P. phosphoraccumulans M0-14T and P. sicca LRZ-2T. Strain HLT2-17T contained C16 : 0 and anteiso-C15 : 0 as the major fatty acids, and MK-9(H4) as the menaquinone. Therefore, based on a polyphasic approach, we propose that strain HLT2-17T (=CGMCC 1.11116T= NBRC 110443T) represents a novel species of the genus Pengzhenrongella and suggest the name Pengzhenrongella frigida sp. nov.
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  • 文章类型: Journal Article
    菌株I65T(=KACC22647T=JCM35315T),一个新的革兰氏染色阴性,严格的有氧,不活动,非孢子形成,杆状,用几种抗生素处理后,从废水处理系统的进水中分离出橙色细菌,比如美罗培南,庆大霉素,和大环内酯。新鉴定的细菌菌株I65T表现出显著的多药和重金属抗性特征。菌株I65T在Reasoner的2A培养基[0%-2%(w/v)NaCl(最佳,0%),pH5.0-10.0(最佳,pH7.0),和20-45°C(最佳,30°C)]。基于16SrRNA基因测序的系统发育分析证实,菌株I65T与燕山NiabellaCCBAU05354T密切相关(序列相似性为99.56%),希必西索利尼亚菌THG-DN5.5T(97.51%),和ginsengisoliNiabellaGR10-1T(97.09%)。对全基因组序列的进一步分析证实,数字DNA-DNA杂交,平均核苷酸同一性,菌株I65T和燕山N.CCBAU05354T之间的平均氨基酸同一性值分别为23.4、80.7和85.0%,分别,表明菌株I65T与燕山奈瑟菌不同。菌株I65T的基因组大小为6.1Mbp,根据牛津纳米孔平台的评估,其基因组DNAG+C含量为43.0mol%。菌株I65T的主要脂肪酸为iso-C15:0和iso-C15:1G,主要的呼吸醌是MK-7。此外,菌株I65T的主要极性脂质是磷脂酰乙醇胺。基于基因型,化学分类学,和表型数据,菌株I65T代表属于Niabella属的新物种,名字Niabelladefluviisp.11月。是提议的。菌株类型为I65T(=KACC22647T=JCM35315T)。
    Strain I65T (=KACC 22647T=JCM 35315T), a novel Gram-stain-negative, strictly aerobic, non-motile, non-spore-forming, rod-shaped, and orange-pigmented bacterium was isolated from influent water of a wastewater treatment system after treatment with several antibiotics, such as meropenem, gentamicin, and macrolide. The newly identified bacterial strain I65T exhibits significant multi-drug and heavy metal resistance characteristics. Strain I65T was grown in Reasoner\'s 2A medium [0 %-2 % (w/v) NaCl (optimum, 0 %), pH 5.0-10.0 (optimum, pH 7.0), and 20-45°C (optimum, 30 °C)]. Phylogenetic analysis based on 16S rRNA gene sequencing confirmed that strain I65T was closely related to Niabella yanshanensis CCBAU 05354T (99.56 % sequence similarity), Niabella hibiscisoli THG-DN5.5T (97.51 %), and Niabella ginsengisoli GR10-1T (97.09 %). Further analysis of the whole-genome sequence confirmed that the digital DNA-DNA hybridization, average nucleotide identity, and average amino acid identity values between strain I65T and N. yanshanensis CCBAU 05354T were 23.4, 80.7, and 85.0 %, respectively, suggesting that strain I65T is distinct from N. yanshanensis. The genome size of strain I65T was 6.1 Mbp, as assessed using the Oxford Nanopore platform, and its genomic DNA G+C content was 43.0 mol%. The major fatty acids of strain I65T were iso-C15 : 0 and iso-C15 : 1 G, and the major respiratory quinone was MK-7. Moreover, the major polar lipid of strain I65T was phosphatidylethanolamine. Based on genotypic, chemotaxonomic, and phenotype data, strain I65T represents a novel species belonging to the genus Niabella, for which the name Niabella defluvii sp. nov. is proposed. The type strain is I65T (=KACC 22647T=JCM 35315T).
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  • 文章类型: Journal Article
    革兰氏染色阴性,橙黄色,杆状细菌,指定菌株SCSIO19198T,是从南中国海海马冷渗漏的沉积物中分离出来的,公关中国。该菌株是需氧且不运动的。菌株SCSIO19198T的生长发生在pH7-9(最佳,pH7),15-37°C(最佳,25-32°C)和3-8%(w/v)NaCl(最佳,3-6%NaCl)。基于16SrRNA序列的系统发育分析表明,菌株SCSIO19198T属于黄瓜属,与黄冬HD-3T相似度最高(98.35%),其次是AquimiarinusKYW589T(95.17%)和GYP-24T(94.89%)。DNAG+C含量为35.92mol%。菌株SCSIO19198T的基因组与H.seohaensisHD-3T的基因组之间的平均核苷酸同一性值为88.49%。菌株SCSIO19198T与H.SeohaensisHD-3T之间的数字DNA-DNA杂交值为36%。菌株SCSIO19198T的主要脂肪酸(>10%)为iso-C15:0,iso-C15:1G,求和特征3(C16:1ω6c/C16:1ω7c)和前C15:0。MK-6是唯一检测到的呼吸醌。菌株SCSIO19198T的极性脂质包括磷脂酰乙醇胺,两种氨基脂类,糖脂和两种未知的脂质。表型,系统发育,化学分类学和基因组数据清楚地表明,菌株SCSIO19198T代表了黄氏属的一种新物种,为此命名为Hwangdonialuteasp。11月。是提议的。菌株类型为SCSIO19198T(=MCCC1K08674T=KCTC102078T)。
    A Gram-stain-negative, orange-yellow, rod-shaped bacterium, designated strain SCSIO 19198T, was isolated from sediment of the Haima cold seep in the South China Sea, PR China. The strain was aerobic and non-motile. Growth of strain SCSIO 19198T occurred at pH 7-9 (optimum, pH 7), 15-37 °C (optimum, 25-32 °C) and with 3-8 % (w/v) NaCl (optimum, 3-6 % NaCl). Phylogenetic analyses based on 16S rRNA sequences revealed that strain SCSIO 19198T belonged to the genus Hwangdonia, having the highest similarity to Hwangdonia seohaensis HD-3T (98.35 %), followed by Algibacter aquimarinus KYW589T (95.17 %) and Gelatiniphilus marinus GYP-24T (94.89 %). The DNA G+C content was 35.92 mol%. The average nucleotide identity value between the genome of strain SCSIO 19198T and that of H. seohaensis HD-3T was 88.49 %. The digital DNA-DNA hybridization value between strain SCSIO 19198T and H. seohaensis HD-3T was 36 %. The major fatty acids (>10 %) of strain SCSIO 19198T were iso-C15 : 0, iso-C15 : 1 G, summed feature 3 (C16 : 1  ω6c/C16 : 1 ω7c) and anteiso-C15 : 0. MK-6 was the only detected respiratory quinone. The polar lipids of strain SCSIO 19198T included phosphatidylethanolamine, two aminolipids, glycolipid and two unidentified lipids. The phenotypic, phylogenetic, chemotaxonomic and genomic data clearly suggest that strain SCSIO 19198T represents a novel species of the genus Hwangdonia, for which the name Hwangdonia lutea sp. nov. is proposed. The type strain is SCSIO 19198T (=MCCC 1K08674T=KCTC 102078T).
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  • 文章类型: Journal Article
    两种内生放线菌,菌株MK5T和MK7是从茉莉花水稻(OryzasativaKDML105)的表面灭菌根中分离的。这些菌株是需氧放线菌,具有发育良好的底物和形成螺旋孢子链的气生菌丝体。与两个菌株共享高16SrRNA基因序列相似性的类型菌株是Naganishii链霉菌NBRC12892T(99.4%),“灰黄链霉菌”TRMS81-3T(99.2%),和螺旋链霉菌NBRC14215T(98.9%)。菌株MK5T和MK7是同一物种,具有95.3%的数字DNA-DNA杂交(dDDH)值和100%的16SrRNA基因序列相似性。化学分类学数据证实了菌株MK5T和MK7与链霉菌属的隶属关系。菌株MK5T和MK7含有MK-9(H4)作为主要的甲萘醌;两种菌株的全细胞糖均为半乳糖和葡萄糖。菌株MK5T共有93.4%的平均核苷酸同一性(ANI)-Blast,95.5%ANI-MUMmer,93%的平均氨基酸同一性,和61.3%dDDH与螺旋S。NBRC14215T。多相方法证实,菌株MK5T代表了一个新的物种,和名称链霉菌mahasarakhamensissp。11月。是提议的。应变类型为MK5T(=TBRC17754=NRRLB-65683)。基因组挖掘,使用计算机模拟方法并搜索菌株MK5T和MK7的生物合成基因簇,发现基因组中包含编码与植物生长促进有关的蛋白质的基因,生物活性化合物,和有益的酶。菌株MK5T和MK7可以在体外产生吲哚乙酸并溶解磷酸盐。
    Two endophytic actinobacteria, strains MK5T and MK7, were isolated from the surface-sterilized root of Jasmine rice (Oryza sativa KDML 105). These strains were aerobic actinobacteria with a well-developed substrate and aerial mycelia that formed spiral spore chains. The type strains that shared the high 16S rRNA gene sequence similarity with both strains were Streptomyces naganishii NBRC 12892T (99.4%), \"Streptomyces griseicoloratus\" TRM S81-3T (99.2%), and Streptomyces spiralis NBRC 14215T (98.9%). Strains MK5T and MK7 are the same species sharing a digital DNA-DNA hybridization (dDDH) value of 95.3% and a 16S rRNA gene sequence similarity of 100%. Chemotaxonomic data confirmed the affiliation of strains MK5T and MK7 to the genus Streptomyces. Strains MK5T and MK7 contained MK-9(H4) as a major menaquinone; the whole-cell sugar of both strains was galactose and glucose. The strain MK5T shared 93.4% average nucleotide identity (ANI)-Blast, 95.5% ANI-MUMmer, 93% average amino acid identity, and 61.3% dDDH with S. spiralis NBRC 14215T. The polyphasic approach confirmed that strain MK5T represents a novel species, and the name Streptomyces mahasarakhamensis sp. nov. is proposed. The type strain is MK5T (= TBRC 17754 = NRRL B-65683). Genome mining, using an in silico approach and searching biosynthesis gene clusters of strains MK5T and MK7, revealed that the genomes contained genes encoding proteins relating to plant growth promotion, bioactive compounds, and beneficial enzymes. Strains MK5T and MK7 could produce indole acetic acid and solubilize phosphate in vitro.
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  • 文章类型: Journal Article
    革兰氏染色阳性,需氧细菌,指定为YPD9-1T,从腹部斑点绿色的肠道内容物中分离出来,Hexagrammosagrammus,收集在独岛附近,韩国。杆状细胞为氧化酶阳性,过氧化氢酶阴性.主要的细胞脂肪酸是antiso-C15:0、iso-C15:0、C16:0、iso-C16:0和iso-C17:0。主要的极性脂质是二磷脂酰甘油,磷脂酰甘油,磷脂酰乙醇胺和两种未鉴定的脂质。DNAGC含量为47.6mol%,主要的呼吸醌是甲萘醌MK-7。YPD9-1T的16SrRNA基因序列显示出与类芽孢杆菌属的低序列相似性,石鸡类芽孢杆菌1138T(序列相似性97.21%),阿氏芽孢杆菌CJ25T(97.12%)和阿氏芽孢杆菌JJ-42T(96.89%)。基于16SrRNA基因序列的系统发育分析结果表明,YPD9-1T在类芽孢杆菌属的其他物种中形成了独特的分支。数字DNA-DNA杂交,平均核苷酸同一性,YPD9-1T与相关物种的平均氨基酸同一性值在15.3-16.2%之间,74.1-78.4%,和71.1-71.9%,分别,低于物种截止值。根据多相分析的结果,我们得出的结论是,菌株YPD9-1T代表了类芽孢杆菌属的一种新物种,它的名字叫六面芽孢杆菌。11月。是提议的。六方芽孢杆菌的类型菌株是YPD9-1T(=KCTC43424T=LMG32988T)。
    A Gram-stain-positive, aerobic bacterium, designated as YPD9-1T, was isolated from the gut contents of a spotty belly greenling, Hexagrammos agrammus, collected near Dokdo island, South Korea. The rod-shaped cells were oxidase-positive, and catalase-negative. The major cellular fatty acids were anteiso-C15 : 0, iso-C15 : 0, C16 : 0, iso-C16 : 0 and iso-C17: 0. The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and two unidentified lipids. The DNA G+C content was 47.6 mol% and the predominant respiratory quinone was menaquinone MK-7. The 16S rRNA gene sequence of YPD9-1T showed low sequence similarities to species of the genus Paenibacillus, Paenibacillus pocheonensis Gsoil 1138T (97.21 % of sequence similarity), Paenibacillus aestuarii CJ25T (97.12 %) and Paenibacillus allorhizoplanae JJ-42T (96.89 %). The results of phylogenetic analysis based on 16S rRNA gene sequences indicated that YPD9-1T formed a distinct branch among other species of the genus Paenibacillus. The digital DNA-DNA hybridisation, average nucleotide identity, and average amino acid identity values between YPD9-1T and the related species were in the ranges of 15.3-16.2 %, 74.1-78.4 %, and 71.1-71.9 %, respectively, which are below the species cutoff values. On the basis of the results of the polyphasic analysis, we conclude that strain YPD9-1T represents a novel species of the genus Paenibacillus, for which the name Paenibacillus hexagrammi sp. nov. is proposed. The type strain of Paenibacillus hexagrammi is YPD9-1T (=KCTC 43424T =LMG 32988T).
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