Metabolic pathway

代谢途径
  • 文章类型: Journal Article
    自闭症谱系障碍(ASD)是一种发育障碍,其症状范围从社交和沟通障碍到兴趣受限和重复行为,是5-14岁儿童的第四大致残疾病。ASD的危险因素尚未完全了解。环境风险因素被认为在ASD流行中起着重要作用。关注空气污染暴露作为自闭症早期风险因素的研究正在增长,大量研究发现交通和工业排放与ASD风险增加有关。将自闭症与空气污染暴露联系起来的可能机制之一是代谢功能障碍。然而,对于因暴露于空气污染而改变并导致ASD的母亲和儿童的关键代谢途径和相应的代谢物特征,目前尚无共识.因此,我们对已发表的研究人体研究中与空气污染暴露或ASD风险相关的代谢组学特征和代谢途径的论文进行了综述.总之,我们发现脂质失调,脂肪酸,氨基酸,神经递质,微生物组代谢与短期和长期空气污染暴露以及ASD风险相关。这些失调的代谢可能提供有关空气污染暴露的ASD病因的见解。特别是在围产期,神经发育极易受到氧化应激和炎症的损害。
    Autism spectrum disorder (ASD) is a developmental disorder with symptoms that range from social and communication impairments to restricted interests and repetitive behavior and is the 4th most disabling condition for children aged 5-14. Risk factors of ASD are not fully understood. Environmental risk factors are believed to play a significant role in the ASD epidemic. Research focusing on air pollution exposure as an early-life risk factor of autism is growing, with numerous studies finding associations of traffic and industrial emissions with an increased risk of ASD. One of the possible mechanisms linking autism and air pollution exposure is metabolic dysfunction. However, there were no consensus about the key metabolic pathways and corresponding metabolite signatures in mothers and children that are altered by air pollution exposure and cause the ASD. Therefore, we performed a review of published papers examining the metabolomic signatures and metabolic pathways that are associated with either air pollution exposure or ASD risk in human studies. In conclusion, we found that dysregulated lipid, fatty acid, amino acid, neurotransmitter, and microbiome metabolisms are associated with both short-term and long-term air pollution exposure and the risk of ASD. These dysregulated metabolisms may provide insights into ASD etiology related to air pollution exposure, particularly during the perinatal period in which neurodevelopment is highly susceptible to damage from oxidative stress and inflammation.
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  • 文章类型: Journal Article
    Cyromazine,三嗪类杀虫剂,由于像cow豆这样的蔬菜中的残留物,引起了人们对食品安全的关注。微生物代谢是消除农药的关键,但是高效降解环丙嗪的细菌是有限的,与未表征的酶。本研究分离出一株高效的环丙嗪降解菌,分枝杆菌。M15,从一个牛仔田里。M15利用环丙嗪作为其生长的唯一碳源,并在24小时内完全降解了0.5mM的环丙嗪。降解途径涉及将环丙嗪水解为N-环丙基ammeline,并进一步水解为N-环丙基ammelide,依次除去氨基。N-环丙酰胺中的环丙胺基团继续水解为氰尿酸。一种蛋白质,CIA,在M15中被鉴定为氨基水解酶,将环丙嗪降解为N-环丙基ammeline。使用CriA减少了cow豆表面上的环丙嗪残留物,并在浸没溶液中完全降解了它们。这些发现为环丙嗪的微生物降解机制提供了见解,并强调了环丙嗪降解酶在提高食品安全方面的潜力。
    Cyromazine, a triazine insecticide, raises food safety concerns due to residues in vegetables like cowpeas. Microbial metabolism is key for pesticide elimination, but bacteria efficient in cyromazine degradation are limited, with uncharacterized enzymes. This study isolated a highly efficient cyromazine-degrading bacterium, Mycobacterium sp. M15, from a cowpea field. M15 utilized cyromazine as the sole carbon source for its growth and completely degraded 0.5 mM cyromazine within 24 h. The degradation pathway involved hydrolyzing cyromazine to N-cyclopropylammeline and further to N-cyclopropylammelide, with amino groups removed sequentially. The cyclopropylamine group in N-cyclopropionamide continued to hydrolyze to cyanuric acid. A protein, CriA, identified as an aminohydrolase in M15, degraded cyromazine to N-cyclopropylammeline. Using CriA reduced cyromazine residues on cowpea surfaces and completely degraded them in immersion solutions. These findings offer insights into cyromazine\'s microbial degradation mechanism and highlight the potential of cyromazine-degrading enzymes in enhancing food safety.
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  • 文章类型: Journal Article
    金银花是金银花科中的一种有价值的草本植物。虽然对L.japonica的转录组学研究集中在不同的组织(茎,叶子,花)或开花阶段,很少有人研究了外源因素影响化学成分合成的分子机制,如叶面施肥。此外,大多数关于L.Japonica的转录组学研究都是在绿原酸和叶黄素上进行的,整体化学成分的分子合成机理尚未分析。方法:我们进行了单因素,使用酵母多糖进行四级叶面施肥实验。在动态采样的情况下,将不同浓度的酵母多糖连续6天喷雾在日本L.japonica上。高效液相色谱法测定各组中的活性成分。选择表现出最显着差异的两组进行转录组学分析,以鉴定负责日本L.japonica活性成分的关键合成基因。主要结果:对9月8日收集的样品进行的主成分分析显示,0.1g/L酵母多糖处理组与对照组之间的活性成分量存在显着差异。转录组测序分析确定了218个显著差异表达的基因,包括60个上调基因和158个下调基因。在酵母多糖处理下,鉴定了12个参与日本品系化学成分合成途径的差异基因:PAL1,PAL2,PAL3,4CL1,4CL,CHS1,CHS2,CHS,CHI1,CHI2,F3H,还有SOH.结论:本研究有助于从理论上理解与日本血吸虫活性成分相关的必需合成基因。它为进一步的基因探索提供了数据支持,并阐明了粳稻品质形成的分子机制。这些发现对提高日本血吸虫次生代谢产物的含量具有重要意义。
    在线版本包含补充材料,可在10.1007/s12298-024-01482-1获得。
    Lonicera japonica Flos is a valuable herb in the Lonicerae family. While transcriptomic studies on L. japonica have focused on different tissues (stems, leaves, flowers) or flowering stages, few have investigated the molecular mechanisms underlying chemical composition synthesis influenced by exogenous factors, such as foliar fertilization. Moreover, most transcriptomic studies on L. Japonica have been conducted on chlorogenic acid and luteoloside, and the molecular synthesis mechanism of the overall chemical composition has not been analyzed. Methods: We conducted a single-factor, four-level foliar fertilization experiment using yeast polysaccharides. Different yeast polysaccharides concentrations were sprayed on L. japonica for six consecutive days with dynamic sampling. High-performance liquid chromatography determined the active ingredients in each group. The two groups exhibiting the most significant differences were selected for transcriptomic analysis to identify key synthetic genes responsible for L. japonica\'s active ingredients. Key results: Principal component analysis conducted on samples collected on September 8 revealed significant differences in the active ingredient amounts between the 0.1 g/L yeast polysaccharides treatment group and the control group. Transcriptome sequencing analysis identified 218 significantly differentially expressed genes, including 60 upregulated and 158 downregulated genes. Twelve differential genes involved in the chemical components synthesis pathway of L. japonica under yeast polysaccharides treatment were identified: PAL1, PAL2, PAL3, 4CL1, 4CL, CHS1, CHS2, CHS, CHI1, CHI2, F3H, and SOH. Conclusions: This study contributes to the theoretical understanding of essential synthetic genes associated with L. japonica\'s active ingredients. It offers data support for further gene exploration and sheds light on the molecular mechanisms underlying L. japonica quality formation. These findings hold significant implications for enhancing the content of secondary metabolites of L. japonica.
    UNASSIGNED: The online version contains supplementary material available at 10.1007/s12298-024-01482-1.
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  • 文章类型: Journal Article
    作为新烟碱类药物的一员,吡虫啉因其可能的健康风险而受到越来越多的关注。本研究调查了吡喃酮在小鼠体内的代谢和分布。发现了七种吡虫啉代谢物,其中四个是已知的,三个是未知的。观察到的代谢反应是羟基化,硝酸酯水解,甲基化,尿素形成,减少到NO。精确定量显示,口服2小时后,吡虫啉迅速分散到各种器官和组织中,在4小时达到峰值,然后迅速被淘汰。没有在体内积累的倾向,特别是在肝脏中,被观察到。来自T.E.S.T预测的毒性数据表明,吡虫啉对大鼠具有中等毒性,它的大部分代谢物比母体化合物毒性更大。这些发现补充了现有的关于哺乳动物中吡虫啉环境命运的知识,并为其在农业和工业中的应用提供了参考。
    As a member of the neonicotinoid group, imidaclothiz has garnered increasing attention due to its possible health risks. This study investigated the metabolism and distribution of imidaclothiz in mice. Seven imidaclothiz metabolites were found, four of which are known, and three are unknown. The metabolic reactions observed were hydroxylation, nitrate ester hydrolysis, methylation, urea formation, and reduction to NO. Precise quantification revealed that after 2 h of oral administration, imidaclothiz rapidly dispersed into various organs and tissues, peaking at 4 h, and was then swiftly eliminated. No propensity for accumulation in the body, particularly in the liver, was observed. Toxicity data from the T.E.S.T prediction indicated that imidaclothiz had moderate toxicity to rats, and a majority of its metabolites were more toxic than the parent compound. These findings complement the existing knowledge of the imidaclothiz environmental fate in mammals and offer a reference point for its application in agriculture and industry.
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  • 文章类型: Journal Article
    背景四甲基吡嗪作为抗癌物质和风味物质在医药和食品工业领域中已被广泛研究。从丹泉酒厂的发酵谷物中筛选出一株高产川芎嗪的菌株。基因组测序可以通过从基因组角度彻底检查基因和表型之间的联系来揭示细菌的潜在作用。
    结果:在这项研究中,对该菌株的全基因组进行测序和分析。本文总结了TTMP2菌株的基因组特征,并分析了与川芎嗪合成相关的基因。Bacillussp.TTMP2具有完整的代谢途径,可用于乙酰丙酮和四甲基吡嗪的代谢。通过COG注释分析基因功能,GO注释,脂蛋白的KEGG注释和功能注释,碳水化合物活性酶,和病原体-宿主相互作用。系统发育分析表明,巴西芽孢杆菌与芽孢杆菌具有很高的同源性。TTMP2.16种芽孢杆菌的基因组涵盖了芽孢杆菌的所有基因,表明芽孢杆菌属具有开放的全基因组,可以在不同的环境中生存。
    结论:对来自芽孢杆菌的基因组测序数据的分析。TTMP2表明其代谢特征可被深入理解,表明该细菌在四甲基吡嗪的合成中起着特殊的作用。
    BACKGROUND: Tetramethylpyrazine has been extensively studied as an anticancer substance and a flavor substance in the fields of medicine and food industry. A strain with high tetramethylpyrazine production was screened from the fermented grains of Danquan winery. Genome sequencing can reveal the potential roles of bacteria by thoroughly examining the connection between genes and phenotypes from a genomic perspective.
    RESULTS: In this study, whole genome of this strain was sequenced and analyzed. This paper summarized the genomic characteristics of strain TTMP2 and analyzed genes related to the synthesis of tetramethylpyrazine. Bacillus sp. TTMP2 has a complete metabolic pathway for acetoin and tetramethylpyrazine metabolism. Gene function was analyzed by COG annotation, GO annotation, KEGG annotation and functional annotations for lipoproteins, carbohydrate-active enzymes, and pathogen-host interactions. Phylogenetic analysis indicated that Bacillus velezensis had the high homology with Bacillus sp. TTMP2. Genomes of 16 Bacillus species cover all genes of Bacillus, suggesting that genus Bacillus has an open pan-genome and can survive in diverse environments.
    CONCLUSIONS: The analysis of genome sequencing data from Bacillus sp. TTMP2 showed that its metabolic characteristics could be deeply understood, indicating that this bacterium had a particular role in tetramethylpyrazine synthesis.
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  • 文章类型: Journal Article
    背景:严重发热伴血小板减少综合征(SFTS)是由SFTS病毒(SFTSV)引起的新兴传染病,具有广泛的地理分布。SFTS的主要临床表现是发热和血小板减少,多器官衰竭是导致死亡的主要原因。虽然大多数患者通过治疗康复,对SFTSV感染的潜在长期代谢作用知之甚少。
    目的:本研究旨在揭示SFTSV感染后代谢通路和细胞因子反应失调,这对受影响个体的短期和长期健康构成重大风险。
    方法:从浙江省台州市招募了14例实验室确诊的临床SFTS病例和38例健康对照,其中包括18例SFTSVIgG阳性和20例IgG阴性。中国东部。纳入健康对照的标准包括居住在研究区域至少一年,过去两周没有发烧或其他症状,无SFTS诊断史。超高效液相色谱-质谱(UHPLC-MS)用于获得血浆代谢物的相对丰度。短期代谢物是指仅在SFTSV感染期间出现的短暂改变,而即使在SFTSV感染恢复后,长期代谢物仍持续偏离正常水平。此外,通过荧光强度测量对12种细胞因子的浓度进行定量.使用正交投影到潜在结构判别分析(OPLS-DA)和Wilcoxon秩检验来筛选差异代谢物。使用MetaboAnalyst进行代谢途径分析。使用Wilcoxon秩检验检查代谢物和细胞因子的组间差异。使用Spearman方法分析鉴定的代谢物和细胞因子之间的相关性矩阵。
    结论:我们通过分析比较筛选了122种长期代谢物和108种短期代谢物,并分析了它们与12种细胞因子的相关性。甘油磷脂代谢(GPL)被认为是一个重要的短期代谢途径,表明GPL的激活可能与SFTSV的自我复制有关。而磷酸戊糖途径和丙氨酸,天冬氨酸,和谷氨酸代谢被认为是显著的长期代谢途径在对抗患者长期的氧化应激中起作用。此外,我们的研究提出了一个新的观点,即α-酮戊二酸可以作为膳食补充剂来保护正在康复的SFTS患者.
    BACKGROUND: Severe fever with thrombocytopenia syndrome (SFTS) is an emerging infectious disease caused by the SFTS virus (SFTSV), which has a wide geographic distribution. The primary clinical manifestations of SFTS are fever and thrombocytopenia, with multiorgan failure being the leading cause of death. While most patients recover with treatment, little is known about the potential long-term metabolic effects of SFTSV infection.
    OBJECTIVE: This study aimed to shed light on dysregulated metabolic pathways and cytokine responses following SFTSV infection, which pose significant risks to the short-term and long-term health of affected individuals.
    METHODS: Fourteen laboratory-confirmed clinical SFTS cases and thirty-eight healthy controls including 18 SFTSV IgG-positive and 20 IgG-negative individuals were recruited from Taizhou city of Zhejiang province, Eastern China. Inclusion criteria of healthy controls included residing in the study area for at least one year, absence of fever or other symptoms in the past two weeks, and no history of SFTS diagnosis. Ultrahigh-performance liquid chromatography-mass spectrometry (UHPLC-MS) was used to obtain the relative abundance of plasma metabolites. Short-term metabolites refer to transient alterations present only during SFTSV infection, while long-term metabolites persistently deviate from normal levels even after recovery from SFTSV infection. Additionally, the concentrations of 12 cytokines were quantified through fluorescence intensity measurements. Differential metabolites were screened using orthogonal projections to latent structures discriminant analysis (OPLS-DA) and the Wilcoxon rank test. Metabolic pathway analysis was performed using MetaboAnalyst. Between-group differences of metabolites and cytokines were examined using the Wilcoxon rank test. Correlation matrices between identified metabolites and cytokines were analyzed using Spearman\'s method.
    CONCLUSIONS: We screened 122 long-term metabolites and 108 short-term metabolites by analytical comparisons and analyzed their correlations with 12 cytokines. Glycerophospholipid metabolism (GPL) was identified as a significant short-term metabolic pathway suggesting that the activation of GPL might be linked to the self-replication of SFTSV, whereas pentose phosphate pathway and alanine, aspartate, and glutamate metabolism were indicated as significant long-term metabolic pathways playing a role in combating long-standing oxidative stress in the patients. Furthermore, our study suggests a new perspective that α-ketoglutarate could serve as a dietary supplement to protect recovering SFTS patients.
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  • 文章类型: Journal Article
    巴西大西洋森林,以其特殊的物种丰富和高度特有性而闻名,作为陆地生物多样性的重要蓄水池,通常被称为生物多样性热点。因此,迫切需要恢复这片森林,以保护某些物种,并解开其他物种的生态生理适应。本研究旨在整合一些生理参数,包括气体交换和叶绿素a荧光,用解剖学和代谢技术来阐明五种不同的本地物种(Paubrasiliaechinata,Chorisiaglaziovii,线虫簇群,Licaniatomentosa,和西棘),每个都占据着不同的生态位,应对降雨的季节性变化及其后果。我们的研究表明,线虫和P.chinata表现出强大的机制来减轻干旱的不利影响。相比之下,其他人表现出更大的适应性(例如,S.terbinthifolia和C.glaziovii)。在这种情况下,探索代谢途径在理解生理策略及其在物种适应中的意义方面已被证明是无价的。这项研究全面概述了水限制的影响及其对各种物种的相应影响,定义每个物种在旱季缓解缺水的策略。
    The Brazilian Atlantic Forest, renowned for its exceptional species richness and high endemism, acts as a vital reservoir of terrestrial biodiversity, often referred to as a biodiversity hotspot. Consequently, there is an urgent need to restore this forest to safeguard certain species and to unravel the ecophysiological adaptations of others. This study aims to integrate some physiological parameters, including gas exchange and chlorophyll a fluorescence, with anatomical and metabolic techniques to elucidate how five different native species (Paubrasilia echinata, Chorisia glaziovii, Clusia nemorosa, Licania tomentosa, and Schinus terebinthifolius), each occupying distinct ecological niches, respond to seasonal variations in rainfall and their consequences. Our investigation has revealed that C. nemorosa and P. echinata exhibit robust mechanisms to mitigate the adverse effects of drought. In contrast, others demonstrate greater adaptability (e.g., S. terebinthifolia and C. glaziovii). In this context, exploring metabolic pathways has proven invaluable in comprehending the physiological strategies and their significance in species acclimatization. This study provides a comprehensive overview of the impact of water restrictions and their consequential effects on various species, defining the strategies each species uses to mitigate water privation during the dry season.
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  • 文章类型: Journal Article
    发酵-微生物降解化合物的过程-是世界范围内用于长期保存新鲜食品的传统食品加工方法。近年来,发酵食品作为保健食品受到关注。发酵增加了配料的营养价值,产生复杂的味道和香气。为了识别发酵食品中的未知成分,有必要对化合物和条件进行无损全面的分析。我们使用分子间单量子相干(iSQC)进行了完整状态的核磁共振(NMR)光谱,以直接和非破坏性地检测蔬菜的降解。我们使用了两种蔬菜和米糠床(nukazuke),用于日本传统的蔬菜发酵。主要代谢物,如糖类,有机酸,在iSQC切片光谱中鉴定了氨基酸。比较降解过程中的NMR信号强度揭示了乳酸发酵的代谢物特征的转变。基于途径的网络分析显示了涉及氨基酸代谢和乳酸发酵的途径。我们使用iSQC进行完整状态NMR光谱的分析方法表明,它可能在其他实验系统中有效,允许评估在真实状态下通常被忽视的现象。
    Fermentation-a process of compound degradation by microorganisms-is a traditional food processing method utilized worldwide for the long-term preservation of fresh foods. In recent years, fermented foods have gained attention as health foods. Fermentation increases the nutritional value of ingredients, producing complex flavors and aromas. To identify unknown components in fermented foods, it is necessary to analyze compounds and conditions nondestructively and comprehensively. We performed intact-state nuclear magnetic resonance (NMR) spectroscopy using intermolecular single quantum coherence (iSQC) to detect the degradation of vegetables directly and nondestructively. We used two types of vegetables and a rice bran bed (nukazuke), which is used for traditional vegetable fermentation in Japan. Major metabolites such as saccharides, organic acids, and amino acids were identified in iSQC-sliced spectra. Comparing NMR signal intensities during degradation revealed the transition of metabolites characteristic of lactic acid fermentation. A pathway-based network analysis showed pathways involved in amino acid metabolism and lactic acid fermentation. Our analytical approach with intact-state NMR spectroscopy using iSQC demonstrated that it may be effective in other experimental systems, allowing for the evaluation of phenomena that have been conventionally overlooked in their true state.
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  • 文章类型: Journal Article
    甘薯浆水(SPPW)是一种营养丰富但利用率低的甘薯淀粉加工副产品。不同比例的云芝(C.versicolor,CV)发酵甘薯浆水(CV-SPPW)的物理化学,研究了酸奶的结构和代谢特性。与0%组相比,硬度指数,10%样本组的弹性指数和凝聚力增加了1.9倍,55.7%和1.39倍,分别。当CV-SPPW以10%的量添加时,酸奶的微观结构和感官评分被认为是最佳的。代谢通路分析表明,酸奶的变化主要参与糖代谢和氨基酸代谢,产生的碳水化合物代谢产物主要包括纤维二糖,麦芽糖醇,d-海藻糖和d-麦芽糖。CV-SPPW在不同程度上改善了酸奶的结构特征,发酵酸奶表现出更好的粘度特性。
    Sweet potato pulp water (SPPW) is a kind of sweet potato starch processing by-product with rich nutrition but low utilization. The impacts of different proportions of Coriolus versicolor (C. versicolor, CV) fermented sweet potato pulp water (CV-SPPW) on the physicochemical, structural and metabolic properties of yogurt were investigated. Compared with 0% group, the hardness index, elasticity index and cohesion of the 10% sample group increased by 1.9-fold, 55.7% and 1.39-fold, respectively. When CV-SPPW was added at an amount of 10%, the microstructure and sensory scores of yogurts were considered as the optimal. Metabolic pathway analysis indicated that the changes of yogurts were mainly involved in sugar metabolism and amino acid metabolism, and that the carbohydrate metabolites produced mainly included cellobiose, maltitol, d-trehalose and d-maltose. The CV-SPPW improved the structural characteristics of yogurts to varying degrees and the fermented yogurts exhibited better viscosity properties.
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  • 文章类型: Journal Article
    关于天然产品的知识和挑战,人们对草药安全性的兴趣正在迅速增长。因此,本研究旨在揭示椭圆型Ardisia的毒理学特征,一种用于治疗各种疾病的传统药用植物。
    对雌性和雄性SpragueDawley大鼠进行急性毒性研究,单次口服2000mg/kgBW的70%乙醇A。椭圆叶提取物,使用常规研究和基于1H-NMR的代谢组学方法的组合。
    物理,血液学,生物化学,和组织病理学评估显示了通常的大鼠特征,给药后14天没有死亡和延迟毒性。1HNMR血清代谢组学描绘了正常组和治疗组之间相似的代谢物。然而,尿代谢组学的1HNMR揭示了碳水化合物的扰动,氨基酸,提取物给药后24h内的能量代谢,而在第14天收集的生物体液中没有毒性生物标志物的积累。基于性别的微小差异揭示了性激素和不同能量消耗对提取物治疗反应的影响。
    这项研究表明,2000mg/kgBW的70%乙醇A.elliptica叶提取物被认为是安全的,并提供了适用于食品和草药产品开发的生理和代谢方面的反应的全面概述。
    UNASSIGNED: Interest in the safety of herbal medicine is growing rapidly regarding knowledge and challenges in natural products. Hence, this study aimed to reveal the toxicological profile of Ardisia elliptica, a traditional medicinal plant used in the treatment of various illnesses.
    UNASSIGNED: Acute toxicity study was performed on female and male Sprague Dawley rats with a single oral administration of 2000 mg/kg BW of 70% ethanolic A. elliptica leaf extract, using a combination of conventional investigations and 1H-NMR-based metabolomics approaches.
    UNASSIGNED: Physical, hematological, biochemical, and histopathological assessments demonstrated the usual rat profile, with no mortality and delayed toxicity 14 days after administration. 1H NMR serum metabolomics depicted similar metabolites between normal and treated groups. Nevertheless, 1H NMR of urinary metabolomics revealed perturbation in carbohydrate, amino acid, and energy metabolism within 24h after extract administration, while no accumulation of toxic biomarkers in the collected biological fluids on Day 14. A minor gender-based difference revealed the influence of sex hormones and different energy expenditure on response to extract treatment.
    UNASSIGNED: This study suggested that 2000 mg/kg BW of 70% ethanolic A. elliptica leaf extract is considered as safe for consumption and offered a comprehensive overview of the response of physiological and metabolic aspects applicable to food and herbal product development.
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