目的:先前对严重急性呼吸综合征冠状病毒2(SARS-CoV-2)的研究集中在影响病毒RNA负转换的因素上。本研究旨在探讨杭州地区不同SARS-CoV-2毒株基因突变对输入病例阴性转化时间(NCT)的影响。浙江省,中国,以便为制定有针对性的防疫指南提供有价值的见解。
方法:这项回顾性研究纳入了2021年4月8日至2022年6月11日在杭州的146例输入SARS-CoV-2病例。我们比较了SARS-CoV-2特异性指标,临床指标,和NCT在野生型(WT)中,Delta,和Omicron集团。使用Spearman相关分析来确定NCT与突变类型/频率的相关性。
结果:输入病例的平均年龄为35.3(SD:12.3)岁,男性占71.92%,女性占28.08%。开放阅读框1ab(ORF1ab)和核衣壳(N)RNA的平均循环阈值(Ct)分别为25.17(SD:6.44)和23.4(SD:6.76),分别。SARS-CoV-2株的突变主要位于N,膜(M),spike(S),ORF1a,ORF1b,ORF3a,WT中的ORF6和ORF9b基因,Delta,和Omicron集团。与Omicron组相比,WT和Delta组的NCT显着延长。T淋巴细胞,白细胞,嗜酸性粒细胞,WT组的嗜碱性粒细胞计数明显高于Delta组。白细胞,红细胞,和嗜碱性粒细胞计数在Delta组明显低于Omicron组。Spearman相关性分析显示病毒RNA的NCT与WT和Omicron毒株的病毒基因突变类型之间存在显着相关性。此外,NCT与Omicron菌株中五个突变的频率显着负相关(ORF1b:P1223L,ORF1b:R1315C,ORF1b:T2163I,ORF3a:T223I,和ORF6:D61L)。
结论:本研究表明Omicron菌株中存在5种突变(ORF1b:P1223L/R1315C/T2163I,ORF3a:T223I和ORF6:D61L)缩短了进口SARS-CoV-2病例的NCT。
OBJECTIVE: Previous studies on severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) have focused on factors that influence the achievement of negative conversion of viral RNA. This study aimed to investigate the effects of the genetic mutations in different SARS-CoV-2 strains on the negative conversion time (NCT) among imported cases in Hangzhou, Zhejiang Province, China, in order to provide valuable insights for developing targeted epidemic prevention guidelines.
METHODS: This retrospective study involved 146 imported SARS-CoV-2 cases in Hangzhou from 8 April 2021 to 11 June 2022. We compared the SARS-CoV-2-specific indicators, clinical indexes, and NCT among the wild-type (WT), Delta, and Omicron groups. Spearman correlation analysis was used to identify the correlations of NCT with mutation types/frequencies.
RESULTS: The mean age of the imported cases was 35.3 (SD: 12.3) years, with 71.92 % males and 28.08 % females. The mean cycle threshold (Ct) values of open reading frame 1ab (ORF1ab) and nucleocapsid (N) RNA were 25.17 (SD: 6.44) and 23.4 (SD: 6.76), respectively. The mutations of SARS-CoV-2 strains were mainly located in N, membrane (M), spike (S), ORF1a, ORF1b, ORF3a, ORF6, and ORF9b genes among the WT, Delta, and Omicron groups. NCT was significantly prolonged in the WT and Delta groups compared to the Omicron group. T lymphocyte, white blood cell, eosinophil, and basophil counts were dramatically higher in the WT group than the Delta group. White blood cell, red blood cell, and basophil counts were significantly lower in the Delta group than the Omicron group. Spearman correlation analysis revealed a significant correlation between the NCT of viral RNA and mutation types of viral genes of WT and Omicron strains. Additionally, NCT was markedly negatively correlated with the frequencies of five mutations in Omicron strains (ORF1b:P1223L, ORF1b:R1315C, ORF1b:T2163I, ORF3a:T223I, and ORF6:D61L).
CONCLUSIONS: This study indicates that five mutations in Omicron strains (ORF1b:P1223L/R1315C/T2163I, ORF3a:T223I and ORF6:D61L) shortened NCT in imported SARS-CoV-2 cases.