AMP, antimicrobial peptide

AMP,抗菌肽
  • 文章类型: Journal Article
    皮肤屏障功能障碍,特应性皮炎(AD)的定义特征,来自多个相互作用的系统。在AD中,皮肤炎症是由宿主-环境相互作用引起的,涉及角质形成细胞以及组织驻留的免疫细胞,如2型先天淋巴细胞,嗜碱性粒细胞,肥大细胞,和2型辅助性T细胞,产生2型细胞因子,包括IL-4、IL-5、IL-13和IL-31。2型炎症广泛影响屏障功能相关基因的表达,如细胞内结构蛋白,细胞外脂,和连接蛋白,并增强金黄色葡萄球菌的皮肤定植。全身性抗2型炎症疗法可能会改善AD患者功能失调的皮肤屏障。
    Skin barrier dysfunction, a defining feature of atopic dermatitis (AD), arises from multiple interacting systems. In AD, skin inflammation is caused by host-environment interactions involving keratinocytes as well as tissue-resident immune cells such as type 2 innate lymphoid cells, basophils, mast cells, and T helper type 2 cells, which produce type 2 cytokines, including IL-4, IL-5, IL-13, and IL-31. Type 2 inflammation broadly impacts the expression of genes relevant for barrier function, such as intracellular structural proteins, extracellular lipids, and junctional proteins, and enhances Staphylococcus aureus skin colonization. Systemic anti‒type 2 inflammation therapies may improve dysfunctional skin barrier in AD.
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  • 文章类型: Journal Article
    昆虫依靠先天免疫系统来识别和消除病原体。该系统的关键组件在所有无脊椎动物中都高度保守。为了检测病原体,昆虫使用模式识别受体(PRR),该受体与病原体表面的特征基序结合,称为病原体相关分子模式(PAMP)。总的来说,昆虫在免疫缺陷(IMD)途径中使用肽聚糖识别蛋白(PGRP)来检测革兰氏阴性菌,和其他PGRPs和革兰氏阴性结合蛋白(GNBPs)在Toll途径中检测革兰氏阳性细菌和真菌,尽管这些途径和其他途径之间存在串扰和合作。一旦病原体被识别出来,这些途径激活了强效抗菌肽(AMP)的产生。已经从基因组测序计划中报道了昆虫中的大多数PRR,但很少有功能特征。对昆虫PRR的初步研究是使用已建立的双翅目模型生物进行的,例如果蝇,但PRR在不同昆虫中的数量和功能作用存在差异。在这里,我们描述了Rhodniusprolixus中PGRP的基因组库,一种寄生虫克氏锥虫的半代谢型半翅目载体,引起人类锥虫病。使用来自免疫激活昆虫的脂肪体的从头转录组,我们发现了5个编码PGRPs的基因。系统发育分析组R.prolixusPGRP与D.melanogasterPGRP-LA,参与呼吸道IMD通路。单个R.prolixusPGRP基因编码同种型,该同种型包含细胞内区域或基序(隐蔽的RIP同型相互作用基序-cRHIM),该基序参与黑腹D.melanogaster的IMD信号传导途径。我们使用RNAi对该基因进行了表征和沉默,并显示含有cRHIMs的PGRPs参与了革兰氏阴性细菌的识别,并激活了原毛囊脂肪体内的IMD通路,类似于D.melanogaster的PGRP-LC。这是含有cRHIM基序的PGRP的第一个功能表征,该基序用于激活半代谢昆虫中的IMD途径。
    Insects rely on an innate immune system to recognize and eliminate pathogens. Key components of this system are highly conserved across all invertebrates. To detect pathogens, insects use Pattern recognition receptors (PRRs) that bind to signature motifs on the surface of pathogens called Pathogen Associated Molecular Patterns (PAMPs). In general, insects use peptidoglycan recognition proteins (PGRPs) in the Immune Deficiency (IMD) pathway to detect Gram-negative bacteria, and other PGRPs and Gram-negative binding proteins (GNBPs) in the Toll pathway to detect Gram-positive bacteria and fungi, although there is crosstalk and cooperation between these and other pathways. Once pathogens are recognized, these pathways activate the production of potent antimicrobial peptides (AMPs). Most PRRs in insects have been reported from genome sequencing initiatives but few have been characterized functionally. The initial studies on insect PRRs were done using established dipteran model organisms such as Drosophila melanogaster, but there are differences in the numbers and functional role of PRRs in different insects. Here we describe the genomic repertoire of PGRPs in Rhodnius prolixus, a hemimetabolous hemipteran vector of the parasite Trypanosoma cruzi that causes Chagas disease in humans. Using a de novo transcriptome from the fat body of immune activated insects, we found 5 genes encoding PGRPs. Phylogenetic analysis groups R. prolixus PGRPs with D. melanogaster PGRP-LA, which is involved in the IMD pathway in the respiratory tract. A single R. prolixus PGRP gene encodes isoforms that contain an intracellular region or motif (cryptic RIP Homotypic Interaction Motif-cRHIM) that is involved in the IMD signaling pathway in D. melanogaster. We characterized and silenced this gene using RNAi and show that the PGRPs that contain cRHIMs are involved in the recognition of Gram-negative bacteria, and activation of the IMD pathway in the fat body of R. prolixus, similar to the PGRP-LC of D. melanogaster. This is the first functional characterization of a PGRP containing a cRHIM motif that serves to activate the IMD pathway in a hemimetabolous insect.
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  • 文章类型: Journal Article
    金黄色葡萄球菌的几项临床试验(S.金黄色葡萄球菌)-特应性皮炎(AD)的靶向治疗在是否改善AD严重程度评分方面显示出相互矛盾的结果。这项研究进行了基于模型的荟萃分析,以调查这些相互矛盾的结果的可能原因,并提出如何提高金黄色葡萄球菌靶向疗法的疗效。我们开发了一个数学模型,描述了系统水平的AD发病机理,涉及金黄色葡萄球菌和凝固酶阴性葡萄球菌(CoNS)之间的动态相互作用。我们的模型模拟再现了在临床上观察到的应用人源A9和氟氯西林对AD严重程度的有害影响,并表明如果消除了对CoNS的杀菌活性,这些影响就消失了。假设的(模拟的)根除金黄色葡萄球菌3.0log10集落形成单位/cm2而不杀死CoNS实现了与dupilumab相当的湿疹面积和严重程度指数75。如果将dupilumab与金黄色葡萄球菌根除联合使用,则会增强这种疗效(16周时湿疹面积和严重程度指数75)(S.金黄色葡萄球菌根除率:66.7%,dupilumab61.6%和联合87.8%)。对于虚拟dupilumab不良反应者也观察到了改善的功效。我们的模型模拟表明,杀死CoNS会使AD严重程度恶化,而不杀死CoNS的金黄色葡萄球菌特异性根除可能对AD患者有效,包括dupilumab不良反应者。这项研究将有助于设计有前途的金黄色葡萄球菌靶向治疗。
    Several clinical trials of Staphylococcus aureus (S. aureus)‒targeted therapies for atopic dermatitis (AD) have shown conflicting results about whether they improve AD severity scores. This study performs a model-based meta-analysis to investigate the possible causes of these conflicting results and suggests how to improve the efficacies of S. aureus‒targeted therapies. We developed a mathematical model that describes systems-level AD pathogenesis involving dynamic interactions between S. aureus and coagulase-negative Staphylococcus (CoNS). Our model simulation reproduced the clinically observed detrimental effects of the application of S. hominis A9 and flucloxacillin on AD severity and showed that these effects disappeared if the bactericidal activity against CoNS was removed. A hypothetical (modeled) eradication of S. aureus by 3.0 log10 colony-forming unit per cm2 without killing CoNS achieved Eczema Area and Severity Index 75 comparable with that of dupilumab. This efficacy was potentiated if dupilumab was administered in conjunction with S. aureus eradication (Eczema Area and Severity Index 75 at week 16) (S. aureus eradication: 66.7%, dupilumab 61.6% and combination 87.8%). The improved efficacy was also seen for virtual dupilumab poor responders. Our model simulation suggests that killing CoNS worsens AD severity and that S. aureus‒specific eradication without killing CoNS could be effective for patients with AD, including dupilumab poor responders. This study will contribute to designing promising S. aureus‒targeted therapy.
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  • 文章类型: Journal Article
    膜翅目是一种尚未开发的毒液分泌物来源。他们最近的蛋白质转录组学研究揭示了参与各种生物过程的毒素,包括疼痛,瘫痪过敏反应,和抗菌活性。因此,需要进行全面和特定的运动来收集膜翅目毒液。我们认为,数据驱动的生物勘探可能有助于优先考虑采样并减轻相关成本。这项工作从膜翅目毒液中建立了当前的蛋白质景观,以通过研究它们的起源来评估可能的样本偏倚,序列多样性,已知的结构,和生物学功能。我们从UniProt数据库中收集了所有282个报告的膜翅目毒素(肽和蛋白质),我们将其聚集到来自三个研究进化枝的21个蛋白质家族中-黄蜂,蜜蜂,还有蚂蚁.我们确定了119个膜翅目毒素的生物学靶标,从病原体膜到真核蛋白酶,离子通道和蛋白质受体。我们的系统研究进一步扩展到膜翅目毒素的治疗和生物技术价值,我们揭示了在作物害虫中的有希望的应用,人类感染,自身免疫性疾病,和神经退行性疾病。
    Hymenopterans are an untapped source of venom secretions. Their recent proteo-transcriptomic studies have revealed an extraordinary pool of toxins that participate in various biological processes, including pain, paralysis, allergic reactions, and antimicrobial activities. Comprehensive and clade-specific campaigns to collect hymenopteran venoms are therefore needed. We consider that data-driven bioprospecting may help prioritise sampling and alleviate associated costs. This work established the current protein landscape from hymenopteran venoms to evaluate possible sample bias by studying their origins, sequence diversity, known structures, and biological functions. We collected all 282 reported hymenopteran toxins (peptides and proteins) from the UniProt database that we clustered into 21 protein families from the three studied clades - wasps, bees, and ants. We identified 119 biological targets of hymenopteran toxins ranging from pathogen membranes to eukaryotic proteases, ion channels and protein receptors. Our systematic study further extended to hymenopteran toxins\' therapeutic and biotechnological values, where we revealed promising applications in crop pests, human infections, autoimmune diseases, and neurodegenerative disorders.
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  • 文章类型: Journal Article
    肥胖在全球范围内日益流行,它也被认为是导致炎症性皮肤病发病的主要环境因素,包括银屑病(PSO)和特应性皮炎(AD)。此外,肥胖使这些炎症性皮肤病的病程恶化并损害其治疗反应。新的证据表明,肥大的脂肪细胞和浸润的免疫细胞分泌多种分子,包括脂肪酸和脂肪因子,比如瘦素,脂联素,和一组调节我们免疫系统的细胞因子/趋化因子。在这次审查中,我们描述了脂肪肥大如何导致肥胖的慢性低度炎症状态,以及肥胖相关的炎症因子如何参与PSO和/或AD的发病机制.最后,我们讨论了抗菌肽的潜在作用,快速扩张介导的机械应力和表皮屏障功能受损,和真皮脂肪调节皮肤炎症。一起,这篇综述总结了目前关于肥胖与PSO和AD发病机制相关的文献,强调脂肪组织在皮肤中的潜在重要但被忽视的免疫调节作用。
    Obesity is a growing epidemic worldwide, and it is also considered a major environmental factor contributing to the pathogenesis of inflammatory skin diseases, including psoriasis (PSO) and atopic dermatitis (AD). Moreover, obesity worsens the course and impairs the treatment response of these inflammatory skin diseases. Emerging evidence highlights that hypertrophied adipocytes and infiltrated immune cells secrete a variety of molecules, including fatty acids and adipokines, such as leptin, adiponectin, and a panel of cytokines/chemokines that modulate our immune system. In this review, we describe how adipose hypertrophy leads to a chronic low-grade inflammatory state in obesity and how obesity-related inflammatory factors are involved in the pathogenesis of PSO and/or AD. Finally, we discuss the potential role of antimicrobial peptides, mechanical stress and impairment of epidermal barrier function mediated by fast expansion, and dermal fat in modulating skin inflammation. Together, this review summarizes the current literature on how obesity is associated with the pathogenesis of PSO and AD, highlighting the potentially important but overlooked immunomodulatory role of adipose tissue in the skin.
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  • 文章类型: Journal Article
    化脓性汗腺炎(HS)是一种慢性皮肤炎症性疾病,复发缓解过程。该病的发病机制知之甚少,涉及多种因素,包括遗传学,环境,宿主-微生物相互作用,和免疫失调。特别是,皮肤微生物组的组成随着疾病的进展而变化,尽管尚不清楚这是主要还是次要过程。免疫调节治疗试验阐明了特异性免疫途径和细胞因子信号在疾病机制中的作用,如TNF-α,IL-1β,IL-12、IL-17、IL-23和补体。未来的研究应继续研究HS发病机理中微生物变化和免疫失调的原因和影响因素。
    Hidradenitis suppurativa (HS) is an inflammatory disease of the skin with a chronic, relapsing-remitting course. The pathogenesis of the disease is poorly understood and involves multiple factors, including genetics, environment, host-microbe interactions, and immune dysregulation. In particular, the composition of the cutaneous microbiome shifts as the disease progresses, although it is unclear whether this is a primary or secondary process. Trials with immunomodulatory therapy elucidate the role of specific immune pathways and cytokine signaling in disease mechanism, such as TNF-α, IL-1β, IL-12, IL-17, IL-23, and complement. Future studies should continue examining the causes of and contributing factors to microbial changes and immune dysregulation in HS pathogenesis.
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  • 文章类型: Journal Article
    化脓性汗腺炎(HS)和特应性皮炎(AD)都是慢性炎症性皮肤病。这两种情况之间的关联可能对阐明发病机理具有重要的潜在意义。病程,和治疗。
    研究AD和HS之间的关联。
    我们对2007年至2017年在杜克大学医学中心就诊的患有AD的患者与未诊断为AD的对照组进行了回顾性队列研究。AD和HS的关联是在调整了其他混杂因素后使用逻辑回归模型评估的,包括年龄,性别,和种族。
    在28,780名诊断为AD的患者中,非AD组的48,383例患者中有325例(1.1%)被诊断为HS,而非AD组的患者中有76例(0.2%)被诊断为HS。调整后的逻辑回归模型显示,与对照组非AD组相比,AD组诊断为HS的比值比增加(比值比:5.57,95%置信区间:4.30-7.21,P<.001)。
    这是一项在单一机构进行的回顾性研究,可能存在监测偏倚。
    AD患者比没有AD的患者更有可能被诊断为HS。需要进一步的研究来了解病理生理机制和潜在的治疗意义。
    UNASSIGNED: Hidradenitis suppurativa (HS) and atopic dermatitis (AD) are both chronic inflammatory skin diseases. An association between these 2 conditions can have important potential implications for elucidating pathogenesis, disease course, and treatment.
    UNASSIGNED: To investigate the association between AD and HS.
    UNASSIGNED: We performed a retrospective cohort study of patients seen at Duke University Medical Center from 2007 to 2017 who had AD compared with a control group without an AD diagnosis. The association of AD and HS was evaluated using a logistic regression model after adjusting for other confounders including age, sex, and race.
    UNASSIGNED: Of 28,780 patients with an AD diagnosis, 325 (1.1%) were diagnosed with HS compared with 76 (0.2%) within the 48,383 patients in the non-AD group. An adjusted logistic regression model demonstrated an increased odds ratio of having HS diagnosis in the AD group as compared with the control non-AD group (odds ratio: 5.57, 95% confidence interval: 4.30-7.21, P < .001).
    UNASSIGNED: This was a retrospective study performed at a single institution with the possibility of surveillance bias being present.
    UNASSIGNED: Patients with AD are more likely to be diagnosed with HS than patients without AD. Further research is needed to understand the pathophysiologic mechanism and potential treatment implications.
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  • 文章类型: Journal Article
    利什曼原虫是主要存在于其哺乳动物宿主内的骨髓细胞中的原生动物寄生虫。单核细胞和巨噬细胞在所有形式的利什曼病的发病机理中起着核心作用,包括皮肤和内脏利什曼病。本综述将强调巨噬细胞在利什曼病中作为初始复制生态位的不同作用。抗菌效应,免疫调节剂,并作为临床治愈后持续存在的寄生虫的安全藏身之处。这些多重活性要么归因于确定的巨噬细胞亚群(例如,Ly6ChighCCR2+炎性单核细胞/单核细胞衍生的树突状细胞)或来自组织巨噬细胞的不同激活状态(例如,携带经典[M1]或替代激活[M2]标记的巨噬细胞)。后者由免疫和基质细胞衍生的细胞因子形成(例如,IFN-γ,IL-4,IL-10,TGF-β),微观环境因素(例如,缺氧,张力,氨基酸可用性),宿主细胞衍生的酶,分泌产物和代谢物(例如,血红素加氧酶-1,精氨酸酶1,吲哚胺2,3-双加氧酶,NOS2/NO,NOX2/ROS,脂质)以及寄生虫产物(例如,leishmanolysin/gp63,脂磷酰聚糖)。当前研究的令人兴奋的途径解决了转录,利什曼原虫物种和组织环境依赖性方式中巨噬细胞的表观遗传和翻译重编程。
    Leishmania are protozoan parasites that predominantly reside in myeloid cells within their mammalian hosts. Monocytes and macrophages play a central role in the pathogenesis of all forms of leishmaniasis, including cutaneous and visceral leishmaniasis. The present review will highlight the diverse roles of macrophages in leishmaniasis as initial replicative niche, antimicrobial effectors, immunoregulators and as safe hideaway for parasites persisting after clinical cure. These multiplex activities are either ascribed to defined subpopulations of macrophages (e.g., Ly6ChighCCR2+ inflammatory monocytes/monocyte-derived dendritic cells) or result from different activation statuses of tissue macrophages (e.g., macrophages carrying markers of of classical [M1] or alternative activation [M2]). The latter are shaped by immune- and stromal cell-derived cytokines (e.g., IFN-γ, IL-4, IL-10, TGF-β), micro milieu factors (e.g., hypoxia, tonicity, amino acid availability), host cell-derived enzymes, secretory products and metabolites (e.g., heme oxygenase-1, arginase 1, indoleamine 2,3-dioxygenase, NOS2/NO, NOX2/ROS, lipids) as well as by parasite products (e.g., leishmanolysin/gp63, lipophosphoglycan). Exciting avenues of current research address the transcriptional, epigenetic and translational reprogramming of macrophages in a Leishmania species- and tissue context-dependent manner.
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  • 文章类型: Journal Article
    这篇综述涵盖了肽抗生素领域的一些最新进展,重点是具有新颖或既定作用方式并在动物感染模型中表现出功效的化合物。新的药物发现方法,线性和大环肽抗生素,讨论了诸如多粘菌素之类的脂肽以及位于质膜或细菌细胞外膜中的靶向肽。
    This review covers some of the recent progress in the field of peptide antibiotics with a focus on compounds with novel or established mode of action and with demonstrated efficacy in animal infection models. Novel drug discovery approaches, linear and macrocyclic peptide antibiotics, lipopeptides like the polymyxins as well as peptides addressing targets located in the plasma membrane or in the outer membrane of bacterial cells are discussed.
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  • 文章类型: Journal Article
    共生微生物群(生态失调)组成的改变似乎是功能性胃肠道疾病的致病成分,主要是肠易激综合征(IBS),并可能参与在这些患者中观察到的分泌运动和感觉改变。我们确定了状态抗生素诱导的肠道生态失调是否能够改变结肠疼痛相关和运动反应,并表征了小鼠中涉及的神经免疫机制。为期2周的抗生素治疗引起结肠菌群失调(拟杆菌属的增加,球梭菌和乳杆菌属和双歧杆菌属的减少)。细菌粘附没有受到影响。菌群失调与分泌型IgA水平升高有关,抗微生物凝集素RegIIIγ的上调,和toll样受体(TLR)4和7以及抗微生物肽抵抗素样分子β和TLR5的下调。低生小鼠的杯状细胞较少,粘液层的厚度没有变化。未观察到炎症的宏观或微观迹象。在生态失调小鼠中,大麻素受体2的表达上调,而大麻素1和μ阿片受体下调。在抗生素治疗的小鼠中,腹膜内乙酸或结肠内辣椒素引起的内脏疼痛相关反应显著减弱.菌群失调期间结肠收缩力增强。肠道菌群失调会引起肠道先天免疫系统的变化,并调节疼痛相关感觉系统的表达,与内脏疼痛相关反应减少相关的效果。共生微生物群调节肠道神经免疫感觉系统,导致功能变化,至少与内脏敏感性有关.类似的机制可能解释了抗生素或某些益生菌在治疗IBS中的有益作用。
    Alterations in the composition of the commensal microbiota (dysbiosis) seem to be a pathogenic component of functional gastrointestinal disorders, mainly irritable bowel syndrome (IBS), and might participate in the secretomotor and sensory alterations observed in these patients.We determined if a state antibiotics-induced intestinal dysbiosis is able to modify colonic pain-related and motor responses and characterized the neuro-immune mechanisms implicated in mice. A 2-week antibiotics treatment induced a colonic dysbiosis (increments in Bacteroides spp, Clostridium coccoides and Lactobacillus spp and reduction in Bifidobacterium spp). Bacterial adherence was not affected. Dysbiosis was associated with increased levels of secretory-IgA, up-regulation of the antimicrobial lectin RegIIIγ, and toll-like receptors (TLR) 4 and 7 and down-regulation of the antimicrobial-peptide Resistin-Like Molecule-β and TLR5. Dysbiotic mice showed less goblet cells, without changes in the thickness of the mucus layer. Neither macroscopical nor microscopical signs of inflammation were observed. In dysbiotic mice, expression of the cannabinoid receptor 2 was up-regulated, while the cannabinoid 1 and the mu-opioid receptors were down-regulated. In antibiotic-treated mice, visceral pain-related responses elicited by intraperitoneal acetic acid or intracolonic capsaicin were significantly attenuated. Colonic contractility was enhanced during dysbiosis. Intestinal dysbiosis induce changes in the innate intestinal immune system and modulate the expression of pain-related sensory systems, an effect associated with a reduction in visceral pain-related responses. Commensal microbiota modulates gut neuro-immune sensory systems, leading to functional changes, at least as it relates to viscerosensitivity. Similar mechanisms might explain the beneficial effects of antibiotics or certain probiotics in the treatment of IBS.
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