Structure elucidation

结构说明
  • 文章类型: Journal Article
    四种新的二萜,异蛋白酶A-D(1-4),从Isodonserra(Maxim。)哈拉。基于HR-ESI-MS数据分析,阐明了新的二萜类化合物的结构,1D/2D-NMR-光谱数据,和电子圆二色性(ECD)计算。用MTT测定评价化合物2、3、5、6和9对HepG2和H1975细胞系的细胞毒性。因此,化合物2、3和6对HepG2细胞的细胞毒性水平高于对H1975细胞。此外,化合物6在抑制HepG2细胞增殖方面表现出最大的功效,IC50值为41.13±3.49μM。这种作用是通过以剂量依赖性方式诱导细胞凋亡来实现的。此外,简要讨论了这些化合物的结构和活性之间的关系。
    Four new diterpenoids, isodosins A-D (1-4), together with nine known compounds (5-13) were isolated and identified from the aerial parts of Isodon serra (Maxim.) Hara. The structures of the new diterpenoids were elucidated based on the analysis of HR-ESI-MS data, 1D/2D-NMR-spectroscopic data, and electronic circular dichroism (ECD) calculations. Cytotoxicities of compounds 2, 3, 5, 6, and 9 against the HepG2 and H1975 cell lines were evaluated with the MTT assay. As a result, compounds 2, 3, and 6 revealed higher levels of cytotoxicity against HepG2 cells than against H1975 cells. Moreover, compund 6 demonstrated the most efficacy in inhibiting the proliferation of HepG2 cells, with an IC50 value of 41.13 ± 3.49 μM. This effect was achieved by inducing apoptosis in a dose-dependent manner. Furthermore, the relationships between the structures and activities of these compounds are briefly discussed.
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  • 文章类型: Journal Article
    对雪茄烟叶的植物化学研究导致分离出18种紫罗兰酮类化合物,包括先前未描述的雪茄E(1)和F(2)。此外,化合物醋酸volifoliol(3),脱氢volifoliol(4),8,9-二氢megastigmane-4,6-二烯-3-酮(5),7α,8α-环氧布丁醇B(6),3-氧代肌动蛋白(12),和醋酸洛兰内酯(15),4β-羟基-二氢Actinidiolide(17),首次在烟叶中被发现。所有化合物的结构阐明是通过严格的光谱分析完成的。
    Phytochemical studies on cigar tobacco leaves led to the isolation of 18 ionone-type compounds, including previously undescribed cigatobanes E (1) and F (2). Additionally, compounds vomifoliol acetate (3), dehydrovomifoliol (4), 8,9-dihydromegastigmane-4,6-diene-3-one (5), 7α,8α-epoxyblumenol B (6), 3-oxoactinidol (12), and loliolide acetate (15), 4β-hydroxy-dihydroactinidiolide (17), were found in tobacco leaves for the first time. The structural elucidation of all compounds was accomplished through rigorous spectral analysis.
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  • 文章类型: Journal Article
    十个C-香叶黄酮,连同三个已知的类似物,是从Artocarpuscommunis的叶子中分离出来的。通过全面的光谱分析明确确定了这些化合物的化学结构,单晶X射线衍射实验,和量子化学电子圆二色性计算。在结构上,artocaronesA-I(1-9)代表一组不寻常的,高度修饰的C-香叶黄酮,其中香叶烷基链与类黄酮的邻羟基环化以形成各种杂环支架。值得注意的是,artocaronesE和G-I(5和7-9)具有6H-苯并[c]色烯核心,迄今未在C-香叶化类黄酮中描述。ArtocaroneJ(10)是C-9-C-16连接的C-香叶化金龙的第一个例子。同时,还提出了这些稀有C-香叶黄酮的合理生物合成途径。值得注意的是,化合物1、2、4、8、11和12对呼吸道合胞病毒和单纯疱疹病毒1型具有良好的体外抑制活性。
    Ten C-geranylated flavonoids, along with three known analogues, were isolated from the leaves of Artocarpus communis. The chemical structures of these compounds were unambiguously determined via comprehensive spectroscopic analysis, single-crystal X-ray diffraction experiments, and quantum chemical electronic circular dichroism calculations. Structurally, artocarones A-I (1-9) represent a group of unusual, highly modified C-geranylated flavonoids, in which the geranyl chain is cyclised with the ortho-hydroxy group of flavonoids to form various heterocyclic scaffolds. Notably, artocarones E and G-I (5 and 7-9) feature a 6H-benzo[c]chromene core that is hitherto undescribed in C-geranylated flavonoids. Artocarone J (10) is the first example of C-9-C-16 connected C-geranylated aurone. Meanwhile, the plausible biosynthetic pathways for these rare C-geranylated flavonoids were also proposed. Notably, compounds 1, 2, 4, 8, 11, and 12 exhibited promising in vitro inhibitory activities against respiratory syncytial virus and herpes simplex virus type 1.
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  • 文章类型: Journal Article
    对香葱的化学研究导致分离出七种松香烷型二萜(化合物1-7),包括三种以前未描述的化合物,一种未报告的天然产物,和三种已知的类似物。这些化合物的结构是通过光谱学来确定的,单晶X射线衍射,和ECD光谱。抑菌活性实验表明,化合物5和6对耐甲氧西林金黄色葡萄球菌有明显的抑制作用,MIC值为100μM。此外,化合物1、3、4和7在LPS刺激的BV-2小胶质细胞中表现出抗神经炎症活性,IC50值范围为38.4至67.9μM。
    A chemical investigation of the arils of Torreya grandis led to the isolation of seven abietane-type diterpenoids (compounds 1-7) including three previously undescribed compounds, one unreported natural product, and three known analogs. The structures of these compounds were determined by means of spectroscopy, single-crystal X-ray diffraction, and ECD spectra. An antibacterial activity assay showed that compounds 5 and 6 had significant inhibitory effects on methicillin-resistant Staphylococcus aureus, with MIC values of 100 μM. Moreover, compounds 1, 3, 4, and 7 exhibited anti-neuroinflammatory activity in LPS-stimulated BV-2 microglia cells, with the IC50 values ranging from 38.4 to 67.9 μM.
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  • 文章类型: Journal Article
    两种新的类脂萜类化合物,白术萜酸Ⅰ(1)和白术萜醛Ⅰ(2),是从苍术的根茎中分离出来的。exKitam连同10种已知化合物(3-12)。它们的结构是在综合光谱分析的基础上阐明的(1D/2DNMR,HRESIMS和IR)。此外,评估了所有这些分离的化合物对人胃癌细胞MGC-803和人肝细胞癌细胞HepG-2的细胞毒性活性。除9-12外,它们中的大多数都表现出中等至弱的抑制作用,IC50值在25.15-88.85μM的范围内。
    Two new sesterterpenoids, atractylodes japonica terpenoid acid I (1) and atractylodes japonica terpenoid aldehyde I (2), were isolated from the rhizomes of Atractylodes japonica Koidz. ex Kitam together with ten known compounds (3-12). Their structures were elucidated on the basis of comprehensive spectroscopic analysis (1D/2D NMR, HRESIMS and IR). In addition, all of these isolated compounds were evaluated for their cytotoxic activities against human gastric cancer cell MGC-803 and human hepatocellular cancer cell HepG-2. Most of them exhibited moderate to weak inhibitory effects with IC50 values in the range of 25.15-88.85 μM except for 9-12.
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  • 文章类型: English Abstract
    Mesonachinensis是中国岭南地区常见的药食植物,具有广泛的药理活性。然而,对其化学成分的研究还不充分。在这项研究中,采用多种现代色谱分离技术,从中国山麦草部位的95%乙醇提取物中分离出两种化合物。它们的绝对构型通过紫外光谱(UV)测定,红外光谱(IR),高分辨率质谱(HR-ESI-MS),1D和2D核磁共振(1DNMR和2DNMR),单晶X射线衍射(SC-XRD)。具体来说,它们是两种新的苯甲酰基-倍半萜,命名为美松果醇A和美松果醇B,分别。药理活性评价结果表明,两种新化合物均未表现出明显的抗病毒和抗炎活性。
    Mesona chinensis is a common medicinal and edible plant in the Lingnan region of China, which has extensive pharmacological activity. However, the study of its chemical constituents is not sufficient. In this study, a variety of modern chromatographic separation techniques were used to isolate two compounds from 95% ethanol extract of the grass parts of M. chinensis. Their absolute configurations were determined by ultraviolet spectroscopy(UV), infrared spectroscopy(IR), high resolution mass spectrometry(HR-ESI-MS), 1D and 2D nuclear magnetic resonance(1D NMR and 2D NMR), and single-crystal X-ray diffraction(SC-XRD). Specifically, they were two new benzoyl-sesquiterpenes and named mesonanol A and mesonanol B, respectively. The results of the pharmacological activity evaluation showed that neither of the two new compounds showed obvious antiviral and anti-inflammatory activities.
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  • 文章类型: Journal Article
    目标:西洋参浆果,在地上种植并在8月收获,是一种潜在的有价值的材料。该研究的目的是分析西洋参浆果中的特定多糖,并通过体内外实验和分子对接来证明其抗炎作用。
    方法:脱蛋白和透析后,提取的粗多糖经分离纯化。通过傅里叶变换红外光谱(FT-IR)研究了特定分离多糖的结构,GC-MS和核磁共振(NMR),使用体外和体内模型(Raw264.7细胞和斑马鱼)评估抗炎活性。分子对接用于分析与环氧合酶2(COX-2)的结合能力和相互作用。
    结果:从西洋参浆果中分离出一种新型的中性多糖部分(AGBP-A)。结构分析表明,AGBP-A的重均分子量(Mw)为122,988Da,分散指数(Mw/Mn)值为1.59,由阿拉伯糖和半乳糖组成,其核心结构包含→6)-Gal-(1→残基作为骨架,在C3位具有分支取代。由α-L-Ara-(1→,α-L-Ara-(1→,→5)-α-L-Ara-(1→,β-D-Gal-(1→.结果表明,它显着降低了细胞模型中的促炎细胞因子。在斑马鱼模型中,AGBP-A减少了中性粒细胞大量募集到尾侧线神经肥大,暗示炎症的缓解。分子对接用于分析联合能力和与COX-2的相互作用。
    结论:我们的研究表明AGBP-A作为一种安全有效的天然抗炎成分具有潜在的疗效。
    OBJECTIVE: American ginseng berries, grown in the aerial parts and harvested in August, are a potentially valuable material. The aim of the study was to analyze the specific polysaccharides in American ginseng berries, and to demonstrate the anti-inflammation effect through in vitro and in vivo experiments and molecular docking.
    METHODS: After deproteinization and dialysis, the extracted crude polysaccharide was separated and purified. The structure of the specific isolated polysaccharide was investigated by Fourier Transform infrared spectroscopy (FT-IR), GC-MS and nuclear magnetic resonance (NMR), and anti-inflammatory activity was evaluated using in vitro and in vivo models (Raw 264.7 cells and zebrafish). Molecular docking was used to analyze the binding capacity and interaction with cyclooxygenase-2 (COX-2).
    RESULTS: A novel neutral polysaccharide fraction (AGBP-A) was isolated from American ginseng berries. The structural analysis demonstrated that AGBP-A had a weight-average molecular weight (Mw) of 122,988 Da with a dispersity index (Mw/Mn) value of 1.59 and was composed of arabinose and galactose with a core structure containing →6)-Gal-(1→ residues as the backbone and a branching substitution at the C3 position. The side-chains comprised of α-L-Ara-(1→, α-L-Ara-(1→, →5)-α-L-Ara-(1→, β-D-Gal-(1→. The results showed that it significantly decreased pro-inflammatory cytokines in the cell model. In a zebrafish model, AGBP-A reduced the massive recruitment of neutrophils to the caudal lateral line neuromast, suggesting the relief of inflammation. Molecular docking was used to analyze the combined capacity and interaction with COX-2.
    CONCLUSIONS: Our study indicated the potential efficacy of AGBP-A as a safe and valid natural anti-inflammatory component.
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  • 文章类型: Journal Article
    粘细菌是具有广泛适应性的特殊细菌,它们是结构多样的天然产物的丰富来源,具有有趣的生物学特性。这里,采用大肠杆菌诱饵法,从我国某湿地公园沉积物中分离出一株革兰氏阴性粘杆菌菌株s54d21T。基于16SrRNA基因序列和基因组数据,该菌株被证明是一种罕见的Hyalangium属的新物种,指定的Hyalangiumrubersp.nov(型应变s54d21T=GDMCC1.1945T=JCM39263T)。随后对菌株s54d21T的化学研究导致分离出三种稀有的3,5,6-三取代的2(1H)-吡嗪酮,即,透明质酮A-C(1-3),连同已知的大乳素A(4)。通过对光谱数据和密度泛函理论(DFT)计算的广泛分析,明确地指定了这些新结构及其绝对构型。在生物测定中,化合物4对人细胞系RKO表现出中等的细胞毒活性,A549和NCM460的IC50值范围为27.21至32.14μM。
    Myxobacteria are special bacteria with wide adaptability, which are rich sources of structurally diverse natural products with intriguing biological properties. Here, a gram-negative myxobacterium strain s54d21T was isolated from the sediment of a wetland park in China using the Escherichia coli baiting method. Based on 16S rRNA gene sequence and genomic data, the strain was demonstrated to be a novel species of a rare genus Hyalangium, designated Hyalangium ruber sp. nov (type strain s54d21T = GDMCC 1.1945T = JCM 39263T). The subsequent chemical investigation of the strain s54d21T led to the isolation of three rare 3,5,6-trisubstituted 2(1H)-pyrazinones, namely, hyalanones A-C (1-3), together with a known macrolactin A (4). Those new structures and their absolute configurations were unambiguously assigned by extensive analyses of spectroscopic data and density functional theory (DFT) calculations. In biological assays, compound 4 exhibited moderate cytotoxic activities against human cell lines RKO, A549, and NCM460 with IC50 values ranging from 27.21 to 32.14 μM.
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  • 文章类型: Journal Article
    青霉菌株以产生具有独特结构和有前途的生物活性的多种次生代谢产物而闻名。我们的化学调查,伴随着发酵培养基的优化,一种新分离的真菌,申通青霉XL-F41,导致12个化合物的分离。其中有两种新的吲哚萜烯生物碱,ShentoninsA和B(1和2),和一种新的脂肪酸3.ShentoninA(1)的特征是在典型的琥珀酰亚胺环的氧原子处进行了不寻常的甲基修饰,在结构相似的胸骨D中没有看到的特征。此外,ShentoninA(1)在H-3和H-4之间具有顺式关系,表明在它们各自的真菌中存在不同的酶促扩环过程。ShentoninsA(1)和B(2)的特征还在于琥珀酰亚胺环内羰基还原为羟基。所有分离的化合物都进行了抗菌评估,发现化合物12对白色念珠菌具有中等抑制活性。此外,申通青霉菌XL-F41的基因组测序发现了丰富的沉默生物合成基因簇,表明未来需要努力激活这些簇并释放真菌的全部化学潜力。
    Penicillium strains are renowned for producing diverse secondary metabolites with unique structures and promising bioactivities. Our chemical investigations, accompanied by fermentation media optimization, of a newly isolated fungus, Penicillium shentong XL-F41, led to the isolation of twelve compounds. Among these are two novel indole terpene alkaloids, shentonins A and B (1 and 2), and a new fatty acid 3. Shentonin A (1) is distinguished by an unusual methyl modification at the oxygen atom of the typical succinimide ring, a feature not seen in the structurally similar brocaeloid D. Additionally, shentonin A (1) exhibits a cis relationship between H-3 and H-4, as opposed to the trans configuration in brocaeloid D, suggesting a divergent enzymatic ring-expansion process in their respective fungi. Both shentonins A (1) and B (2) also feature a reduction of a carbonyl to a hydroxy group within the succinimide ring. All isolated compounds were subjected to antimicrobial evaluations, and compound 12 was found to have moderate inhibitory activity against Candia albicans. Moreover, genome sequencing of Penicillium shentong XL-F41 uncovered abundant silent biosynthetic gene clusters, indicating the need for future efforts to activate these clusters and unlock the full chemical potential of the fungus.
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  • 文章类型: Journal Article
    FalonolideA(1)和B(2),两种新的聚炔杂化邻苯二甲酸酯是由Z-木质内酯和falcarindiol聚合的前所未有的碳骨架产生的,以及六种新的相关邻苯二甲酸酯(3-8),从川芎中分离得到。通过光谱分析阐明了它们的结构,计算机辅助结构阐明(CASE)分析,DP4+概率分析和电子圆二色性(ECD)计算。提出了1-8的合理生物合成途径,用密度泛函理论(DFT)方法揭示了2的产生机理。化合物4和6表现出显著的血管舒张活性,EC50为8.00±0.86和6.92±1.02μM,分别。化合物4还表现出对NO产生的显著抑制作用,EC50值为8.82±0.30μM。基于已建立的化合物库,对苯酞类的构效关系分析进行了探索,以提供对血管扩张剂和抗炎药物开发的见解。
    Falonolide A (1) and B (2), two novel polyyne hybrid phthalides resulting from unprecedented carbon skeleton polymerized by Z-ligustilide and falcarindiol, along with six new related phthalides (3-8), were isolated from Ligusticum chuanxiong Hort. Their structures were elucidated by spectroscopic analysis, computer-assisted structure elucidation (CASE) analysis, DP4+ probability analysis and electronic circular dichroism (ECD) calculations. A plausible biosynthetic pathway for 1-8 was proposed, and the production mechanism of 2 was revealed by density functional theory (DFT) method. Compounds 4 and 6 exhibited significant vasodilatory activity with EC50 of 8.00 ± 0.86 and 6.92 ± 1.02 μM, respectively. Compound 4 also displayed significant inhibitory effect of NO production with EC50 value of 8.82 ± 0.30 μM. Based on the established compounds library, structure-activity relationship analysis of phthalides was explored to provide insights into the drug development of vasodilators and anti-flammatory.
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