Structure elucidation

结构说明
  • 文章类型: Journal Article
    六水合草酸钚(IV)(Pu(C2O4)2·6H2O;PuOx)是从用过的核燃料中回收钚的重要中间体。它通过沉淀的形成是很好的研究,然而它的晶体结构仍然未知。相反,PuOx的晶体结构被认为是同构的,与六水合草酸氖(IV)(Np(C2O4)-2·6H2O;NpOx)和六水合草酸铀(IV)(U(C2O4)-2·6H2O;UOx),尽管在确定后两种化合物的晶体结构中的水位置时存在高度未解决的无序。关于the系元素的同构行为的这种假设已用于预测PuOx的结构,以用于广泛的研究。在这里,我们报道了PuOx和Th(C2O4)2·6H2O(ThOx)的第一个晶体结构。这个数据,随着UOx和NpOx的新表征,已经完全确定了水分子周围无序的结构和分辨率。具体来说,我们确定了两个水分子与每个金属中心的配位,这需要从轴向到赤道的草酸盐配位模式的变化,这在文献中没有报道过。这项工作说明了有必要重新审视以前关于基本act系元素化学的假设,在当前的核领域中严重依赖。
    Plutonium(IV) oxalate hexahydrate (Pu(C2 O4 )2  ⋅ 6 H2 O; PuOx) is an important intermediate in the recovery of plutonium from used nuclear fuel. Its formation by precipitation is well studied, yet its crystal structure remains unknown. Instead, the crystal structure of PuOx is assumed to be isostructural with neptunium(IV) oxalate hexahydrate (Np(C2 O4 )2  ⋅ 6 H2 O; NpOx) and uranium(IV) oxalate hexahydrate (U(C2 O4 )2  ⋅ 6 H2 O; UOx) despite the high degree of unresolved disorder that exists when determining water positions in the crystal structures of the latter two compounds. Such assumptions regarding the isostructural behavior of the actinide elements have been used to predict the structure of PuOx for use in a wide range of studies. Herein, we report the first crystal structures for PuOx and Th(C2 O4 )2  ⋅ 6 H2 O (ThOx). These data, along with new characterization of UOx and NpOx, have resulted in the full determination of the structures and resolution of the disorder around the water molecules. Specifically, we have identified the coordination of two water molecules with each metal center, which necessitates a change in oxalate coordination mode from axial to equatorial that has not been reported in the literature. The results of this work exemplify the need to revisit previous assumptions regarding fundamental actinide chemistry, which are heavily relied upon within the current nuclear field.
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  • 文章类型: Journal Article
    We present a method to use long-range CH coupling constants to derive the correct diastereoisomer from the molecular constitution of small molecules. A set of 79 2 JCH and 3 JCH values collected from a single HSQMBC experiment on a sample of strychnine were used in the CASE-3D (computer-assisted 3D structure elucidation) protocol. In addition to the most commonly used 3 JCH coupling constants, the subset of 32 2 JCH values alone showed an excellent degree of configuration selection. The study is mainly based on comparison of DFT-calculated 2,3 JCH values with experimental ones, critical for the case of 2 JCH . But the configuration selection also works well using 3 JCH values predicted from a semi-empirical Karplus-based equation limited to H-C-C-C fragments. The robustness, shown using strychnine as a proof of concept, makes the J-based CASE-3D analysis a viable option for the application in fields such as peptide and carbohydrate research, organic synthesis, natural-product identification and analysis, as well as medicinal chemistry.
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  • 文章类型: Journal Article
    Bond length alternation is a chemical phenomenon in benzene rings fused to other rings, which has been mainly predicted theoretically. Its physical origin is still not clear and has generated discussion. Here, by using a strategy that combines microwave spectroscopy, custom-made synthesis and high-level ab initio calculations, we demonstrate that this phenomenon is clearly observed in the prototype indazole molecule isolated in the gas phase. The 1H-indazole conformer was detected by rotational spectroscopy, and its 17 isotopologues resulting from single and double heavy atom substitution (13 C and 15 N) were also unambiguously observed. Several experimental structures were determined and, in particular, the most useful semi-experimental equilibrium structure (re SE ), allowed determination of the heavy atom bond lengths to milli-Ångstrom precision. The experimentally determined bond length alternation is estimated to correspond to 60:40 contributions from the two resonant forms of 1H-indazole.
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  • 文章类型: Journal Article
    Among known molecular switches, spiropyrans attract considerable interest because of their reversible responsiveness to external stimuli and the deep conformational and electronic changes that characterize the switching process between the two isomeric forms [spiropyran (SP) and merocyanine (MC)]. Metal coordination is one of the most interesting aspects of spiropyrans for its potential in sensing, catalysis, and medicinal chemistry, but little is known about the details surrounding spiropyran-metal ion binding. We investigated the interplay between an N-modified 8-methoxy-6-nitrospiropyran (SP-E), designed to provide appropriate molecular flexibility and a range of competing/collaborative metal binding sites, with Mg2+ , Cu2+ and Zn2+ , which were chosen for their similar coordination geometry preferences while differing in their hard/soft character. The formed molecular complexes were studied by means of UV/Vis, fluorescence, and NMR spectroscopies and mass spectrometry, and the crystal structure of the SP-E-Cu complex was also obtained. The results indicate that the Mg2+ , Zn2+ and Cu2+ complexes have identical coordination stoichiometry. Furthermore, the Mg2+ and Zn2+ complexes display fluorescence properties in solution and visible-light responsiveness. These results provide important spectroscopic and structural information that can serve as a foundation for rational design of spiropyran-based smart materials for metal sensing and scavenging applications.
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  • 文章类型: Journal Article
    Fluorination of pharmaceutical compounds is a common tool to modulate their physiochemical properties. We determine the effects of site-specific aromatic fluorine substitution on the geometric, energetic, vibrational, and electronic properties of the protonated neurotransmitter 2-phenylethylamine (xF-H(+) PEA, x=ortho, meta, para) by infrared multiphoton photodissociation (IRMPD) in the fingerprint range (600-1750 cm(-1) ) and quantum chemical calculations at the B3LYP-D3/aug-cc-pVTZ level. The IRMPD spectra of all ions are assigned to their folded gauche conformers stabilized by intramolecular NH(+) ⋅⋅⋅π hydrogen bonds (H-bonds) between the protonated amino group and the aromatic ring. H→F substitution reduces the symmetry and allows for additional NH(+) ⋅⋅⋅F interactions in oF-H(+) PEA, leading to three distinct gauche conformers. In comparison to oF-H(+) PEA, the fluorination effects on the energy landscape (energy ordering and isomerization barriers) in pF-H(+) PEA and mF-H(+) PEA with one and two gauche conformers are less pronounced. The strengths of the intramolecular NH(+) ⋅⋅⋅F and NH(+) ⋅⋅⋅π bonds are analyzed by the noncovalent interaction (NCI) method.
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  • 文章类型: Journal Article
    新型大麻模拟设计药物的详细结构阐明过程,N-(1-氨基-3,3-二甲基-1-氧代丁烷-2-基)-1-(5-氟戊基)-3-(4-氟苯基)-吡唑-5-甲酰胺,具有高度取代的吡唑骨架,描述了使用核磁共振(NMR)光谱和质谱(MS)技术。在对NMR光谱进行首次分析并与48种可能的吡唑和咪唑结构进行比较后,六个位置异构体吡唑和六个咪唑的子集仍然可以想象。确定了杂环骨架的四个取代基:与吡唑环碳原子结合的质子;5-氟戊基;4-氟苯基取代基;和氨基甲酰基,其被带有叔丁基的甲基残基N-取代。-丁基和氨基甲酰基取代基。5-氟戊基残基位于氮环原子上。额外的NMR实验,如(1)H,(13)进行CHMBC,但是由于基于远程耦合的信号数量很少,预测和观察到的(13)C化学位移的比较变得必要。开放存取互联网移位预测程序NMRDB,NMRSHIFTDB2和CSEARCH用于预测(13)C移位值,从而可以进行有效且明确的结构确定。对于鉴定的N-(1-氨基-3,3-二甲基-1-氧代丁烷-2-基)-1-(5-氟戊基)-3-(4-氟苯基)-吡唑-5-甲酰胺,预测的(13)C位移与观察到的吡唑环碳原子的化学位移和长程偶联之间的最佳一致性,标准误差约为2ppm,每个预测都被发现了。对于测量和预测的化学位移的比较,具有简单取代基的模型化合物被证明是有用的。所鉴定的化合物是由因特网供应商提供的AZ-037的同源物。版权所有©2015JohnWiley&Sons,Ltd.
    The detailed structure elucidation process of the new cannabimimetic designer drug, N-(1-amino-3,3-dimethyl-1-oxobutan-2-yl)-1-(5-fluoropentyl)-3-(4-fluorophenyl)-pyrazole-5-carboxamide, with a highly substituted pyrazole skeleton, using nuclear magnetic resonance (NMR) spectroscopic and mass spectrometric (MS) techniques is described. After a first analysis of the NMR spectra and comparison with 48 possible pyrazole and imidazole structures, a subset of six positional isomeric pyrazoles and six imidazoles remained conceivable. Four substituents of the heterocyclic skeleton were identified: a proton bound to a pyrazole ring carbon atom; a 5-fluoropentyl group; a 4-fluorophenyl substituent; and a carbamoyl group, which is N-substituted with a methyl residue carrying a tert.-butyl and a carbamoyl substituent. The 5-fluoropentyl residue is situated at the nitrogen ring atom. Additional NMR experiments like the (1) H,(13) C HMBC were performed, but due to the small number of signals based on long-range couplings, the comparison of predicted and observed (13) C chemical shifts became necessary. The open access Internet shift prediction programs NMRDB, NMRSHIFTDB2, and CSEARCH were employed for the prediction of (13) C shift values which allowed an efficient and unambiguous structure determination. For the identified N-(1-amino-3,3-dimethyl-1-oxobutan-2-yl)-1-(5-fluoropentyl)-3-(4-fluorophenyl)-pyrazole-5-carboxamide, the best agreement between predicted (13) C shifts and the observed chemical shifts and long-range couplings for the pyrazole ring carbon atoms, with a standard error of about 2 ppm, was found with each of the predictions. For the comparison of measured and predicted chemical shifts model compounds with simple substituents proved helpful. The identified compound is a homologue of AZ-037 which is offered by Internet suppliers. Copyright © 2015 John Wiley & Sons, Ltd.
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  • 文章类型: Journal Article
    Structural analysis and spectroscopic methods revealed a special case of solvatomorphism: hydrogen-bonding-induced geometry and spin change within a same N,O-(bis)chelate of cobalt(II). Solid-state structures are presented for both the tetrahedral and the solvated square-planar forms of the complex. Magnetic-moment measurements and ESR spectroscopy confirmed the high-spin state of the tetrahedral form (μeff =4.7 μB ) and the low-spin state of the square-planar solvatomorph. Specific hydrogen-bonding interactions between the solvent molecules and the complex chelate ring (O1⋅⋅⋅H-CHCl2 (d=2.26 Å, D=3.24 Å, θ=173°); O2⋅⋅⋅H-CHCl2 (d=2.22 Å, D=3.19 Å, θ=165°)) play a pivotal role in biasing the system toward the low-spin ground state.
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  • 文章类型: Journal Article
    在Bingel和Bingel-Hirsch反应中,发现C2-C70(CF3)8是一种非常有前途的底物,其结合了完美的区域选择性和与其类似物相比高得多的反应性。与丙二酸二乙酯的反应产生单加合物C70(CF3)8[C(CO2Et)2]的单一异构体和单一C2对称双加合物C70(CF3)8[C(CO2Et)2]2。Bingel-Hirsch变体特别有趣,因为它还提供了,以类似的区域选择性方式,意料之外的烷基化衍生物C70(CF3)8[CH(CO2Et)2]H和C70(CF3)8[C(CO2Et)2][CH(CO2Et)2]H。已通过(1)H和(19)FNMR光谱以及单晶X射线衍射分离和结构表征了新化合物。借助DFT计算解释了反应的机理和区域化学方面。
    C2 -C70 (CF3 )8 was found to be a very promising substrate in the Bingel and the Bingel-Hirsch reactions combining perfect regioselectivity with much higher reactivity compared to its analogs. The reactions with diethyl malonate yield a single isomer of the monoadduct C70 (CF3 )8 [C(CO2 Et)2 ] and a single C2 -symmetrical bisadduct C70 (CF3 )8 [C(CO2 Et)2 ]2 . The Bingel-Hirsch variation is particularly interesting in that it additionally affords, in a similar regioselective manner, the unexpected alkylated derivatives C70 (CF3 )8 [CH(CO2 Et)2 ]H and C70 (CF3 )8 [C(CO2 Et)2 ][CH(CO2 Et)2 ]H. The novel compounds have been isolated and structurally characterized by means of (1) H and (19) F NMR spectroscopy as well as single-crystal X-ray diffraction. The mechanistic and regiochemical aspects of the reaction are explained with the aid of DFT calculations.
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  • 文章类型: Journal Article
    BACKGROUND: Reseda lutea L. (Resedaceae) or Wild Mignonette is a widely distributed plant species. Pliny the Elder (AD 23-AD 79), a Roman scholar and naturalist, reported the use of R. lutea for reducing tumors in his Historia naturalis. Accounts of the beneficial effects of R. lutea in tumor treatment could also be found in the works of later authors, such as Étienne François Geoffroy (1672-1731) and Samuel Frederick Gray (1766-1828). However, to date no in vivo or in vitro evidence exists in support of the alleged tumor healing properties of R. lutea.
    METHODS: The composition of autolysates obtained from different organs (root, flower and fruit) of R. lutea was investigated by GC and GC-MS analyses and IR, 1D and 2D NMR spectroscopy. These analyses led to the discovery of a new compound isolated in pure form from the flower autolysate. Autolysates and their major constituents were submitted to MTT-dye reduction cytotoxic assay on human A375 (melanoma) and MRC5 (fibroblast) cell lines. Mechanism of the cytotoxic effects was studied by cell cycle analysis and Annexin V assay.
    RESULTS: Benzyl isothiocyanate and 2-(α-l-rhamnopyranosyloxy)benzyl isothiocyanate were identified as the major constituents of the root and flower autolysates, respectively (the later represents a new natural product). These compounds showed significant antiproliferative effects against both cell lines, which could also explain the observed high cytotoxic activity of the tested autolysates. Cell cycle analysis revealed apoptosis as the probable mechanism of cell death.
    CONCLUSIONS: Tumor healing properties attributed to R. lutea in the pre-modern texts were substantiated by the herein obtained results. Two isothiocyanates were found to be the major carriers of the observed activity. Although there was a relatively low differential effect of the plant metabolites on transformed and non-transformed cell lines, one can argue that the noted strong cytotoxicity provides first evidence that could explain the long forgotten use of this particular species.
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