Activity assays

活性测定
  • 文章类型: Journal Article
    紫茎泽兰地上部分的化学分析。结果鉴定出四种前所未有的5/5融合双环半萜,EupatoridA(1),及其类似物使用各种色谱技术命名为eupatoresterA-C(2-4)。通过详细的光谱研究(包括1D,2D-NMR和HRMS),和单晶X射线衍射。抗炎活性,评价了这些化合物的体外肿瘤生长抑制活性和抗菌活性。
    The chemical analysis on the aerial sections of Eupatorium adenophorum Spreng. resulted in the identification of four unprecedented 5/5 fused bicyclosesquiterpenoids, eupatorid A (1), and its analogues named eupatorester A-C (2-4) using various chromatographic techniques. Their structures were unambiguously confirmed by detailed spectroscopic investigations (including 1D, 2D-NMR and HRMS), and single crystal X-ray diffraction. The anti-inflammatory activities, in vitro tumor growth inhibitory activities and antibacterial activities of these compounds were evaluated.
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  • 文章类型: Journal Article
    细胞内血小板活化因子乙酰水解酶II型(PAF-AHII)是一种40kDa的单体酶。它最初被鉴定为水解PAF的乙酰基(1-O-烷基-2-乙酰基-sn-甘油-3-磷酸胆碱)的酶。作为磷脂酶A2超家族的一员,PAF-AHII具有广泛的底物特异性。它可以水解具有相对较短长度或氧化修饰的sn-2链的磷脂,这使其具有各种功能,例如防止氧化应激,转乙酰酶活性和产生脂质介质。PAF-AHII已被证明与多种疾病有关,例如过敏性疾病,氧化应激损伤和缺血损伤,因此,它引起了研究人员的更多关注。在本文中,我们概述了PAF-AHII的完整摘要,包括它的结构,底物特异性,活性测定,抑制剂和生物活性。
    Intracellular platelet activating-factor acetylhydrolase type II (PAF-AH II) is a 40-kDa monomeric enzyme. It was originally identified as an enzyme that hydrolyzes the acetyl group of PAF (1-O-alkyl-2-acetyl-sn-glycero-3-phosphocholine). As a member of phospholipase A2 super family, PAF-AH II has broad substrate specificity. It can hydrolyze phospholipids with relatively short-length or oxidatively modified sn-2 chains which endows it with various functions such as protection against oxidative stress, transacetylase activity and producing lipid mediators. PAF-AH II has been proven to be involved in several diseases such as allergic diseases, oxidative stress-induced injury and ischemia injury, thus it has drawn more attention from researchers. In this paper, we outline an entire summary of PAF-AH II, including its structure, substrate specificity, activity assay, inhibitors and biological activities.
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  • 文章类型: Journal Article
    Naturally occurring constrained peptides are frequently used as scaffolds for bioactive peptide grating due to their high stability. Here, we used in silico methods to design several constrained peptides comprising a scorpion toxin scaffold, a MDM2 binding epitope, and a cluster of positively charged residues. The designed peptides displayed varied binding affinity to MDM2 despite differing by only one or two residues. One of the peptides, SC426, had nanomolar binding affinity (KD =6.6±2.6 nm) to MDM2, and exhibited stronger inhibitory activity on the proliferation of HCT116 cells (p53-wild type) and SW480 cells (p53-mutant) than that of nutlin-3a. Binding mode analysis of the designed peptide at MDM2 suggests that the conserved \"FWL\" epitope was buried in the hydrophobic binding pocket, and the residues located at the periphery of the binding site contributed to the high binding affinity of SC426. Overall, in silico design of miniproteins with therapeutic potential through epitope grafting to the naturally occurring constrained peptide is an effective strategy.
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  • 文章类型: Journal Article
    Muraymycins是具有抗菌活性的尿苷衍生的天然产物的亚类。已经报道了几种穆雷霉素类似物的生物学数据,包括对其靶蛋白的一些体外抑制活性,细菌膜酶MraY。然而,迄今为止,基于此类体外数据的天然存在的muraymycins的结构-活性关系(SAR)研究一直缺失。在这项工作中,我们报告了使用基于荧光的体外MraY测定法对四个Muraymycin亚群A-D的代表进行的详细SAR调查。对于一些muraymycins,观察到MraY的抑制,IC50值在低皮摩尔范围内.将这些抑制效力与抗菌活性进行了比较,并将其与先前报道的MraY与muraymycin抑制剂复合的X射线晶体结构得出的建模数据相关联。总的来说,这些结果将为开发具有优化特性的穆雷霉素类似物作为抗菌候选药物铺平道路。
    Muraymycins are a subclass of antimicrobially active uridine-derived natural products. Biological data on several muraymycin analogues have been reported, including some inhibitory in vitro activities toward their target protein, the bacterial membrane enzyme MraY. However, a structure-activity relationship (SAR) study on naturally occurring muraymycins based on such in vitro data has been missing so far. In this work, we report a detailed SAR investigation on representatives of the four muraymycin subgroups A-D using a fluorescence-based in vitro MraY assay. For some muraymycins, inhibition of MraY with IC50 values in the low-picomolar range was observed. These inhibitory potencies were compared with antibacterial activities and were correlated to modelling data derived from a previously reported X-ray crystal structure of MraY in complex with a muraymycin inhibitor. Overall, these results will pave the way for the development of muraymycin analogues with optimized properties as antibacterial drug candidates.
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