extremophiles

极端微生物
  • 文章类型: Journal Article
    原核生物的分类和代谢多样性及其对极端环境参数的适应性使极端微生物能够在一种或多种环境参数的极端条件下找到其最佳生活条件。在匈牙利,极端微生物丰富的自然栖息地相对罕见。然而,碱性和嗜盐菌可以在浅碱性湖泊(苏打锅)和盐渍(索洛涅茨)土壤中蓬勃发展,极端天气条件有利于独特细菌群落的发展。此外,提供温泉和温泉浴场并提供能源用水的温泉和热井是嗜热菌和超嗜热菌的合适定植场所。多极端微生物,适应多种极端情况,可以在无礼中找到,布达热岩溶的营养贫乏和放射性低的洞穴,在其他人中。本文回顾了该组织,分类组成,以及不同极端细菌群落在局部生物地球化学循环中的潜在作用,基于最近对匈牙利极端微生物的研究。
    The taxonomic and metabolic diversity of prokaryotes and their adaptability to extreme environmental parameters have allowed extremophiles to find their optimal living conditions under extreme conditions for one or more environmental parameters. Natural habitats abundant in extremophilic microorganisms are relatively rare in Hungary. Nevertheless, alkaliphiles and halophiles can flourish in shallow alkaline lakes (soda pans) and saline (solonetz) soils, where extreme weather conditions favor the development of unique bacterial communities. In addition, the hot springs and thermal wells that supply spas and thermal baths and provide water for energy use are suitable colonization sites for thermophiles and hyperthermophiles. Polyextremophiles, adapted to multiple extreme circumstances, can be found in the aphotic, nutrient-poor and radioactive hypogenic caves of the Buda Thermal Karst, among others. The present article reviews the organization, taxonomic composition, and potential role of different extremophilic bacterial communities in local biogeochemical cycles, based on the most recent studies on extremophiles in Hungary.
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  • 文章类型: Journal Article
    显然,生物催化剂通过为已建立的化学过程提供更可持续的方法来塑造未来。工业过程严重依赖有毒化合物的使用和高能或pH反应,这两个因素都导致了气候危机的恶化。在细菌系统和其他微生物中发现的酶,从北极的冰川到阿布扎比的沙质沙漠,提供关键工具和了解我们如何在生物技术领域取得进展。这些嗜极端细菌利用能够在稳定性和反应性方面承受苛刻反应条件的适应性酶。碳水化合物活性酶,包括糖苷水解酶或碳水化合物酯酶,对生物催化的存在和未来极为有利。通过在几乎所有有害环境中将低聚/多糖降解成它们的单体产物,它们在工业中的参与范围从洗衣洗涤剂到纸张和纸浆处理。这包括极高的温度,甚至在没有水的情况下。在这次审查中,我们讨论了来自极端微生物的不同糖苷水解酶的结构和功能,以及它们如何应用于工业规模的反应以取代苛刻化学品的使用,减少浪费,或减少能源消耗。
    It is apparent that Biocatalysts are shaping the future by providing a more sustainable approach to established chemical processes. Industrial processes rely heavily on the use of toxic compounds and high energy or pH reactions, factors that both contributes to the worsening climate crisis. Enzymes found in bacterial systems and other microorganisms, from the glaciers of the Arctic to the sandy deserts of Abu Dhabi, provide key tools and understanding as to how we can progress in the biotechnology sector. These extremophilic bacteria harness the adaptive enzymes capable of withstanding harsh reaction conditions in terms of stability and reactivity. Carbohydrate-active enzymes, including glycoside hydrolases or carbohydrate esterases, are extremely beneficial for the presence and future of biocatalysis. Their involvement in the industry spans from laundry detergents to paper and pulp treatment by degrading oligo/polysaccharides into their monomeric products in almost all detrimental environments. This includes exceedingly high temperatures, pHs or even in the absence of water. In this review, we discuss the structure and function of different glycoside hydrolases from extremophiles, and how they can be applied to industrial-scale reactions to replace the use of harsh chemicals, reduce waste, or decrease energy consumption.
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  • 文章类型: Journal Article
    铬(Cr)化合物通常是毒素,以两种不同的形式大量存在,Cr(VI)和Cr(III),在大自然中。它们在任何环境中的污染都是一个主要问题。许多极端环境,包括寒冷的气候,温暖的气候,酸性环境,碱性/碱性环境,高盐环境,辐射,干旱,高压,和厌氧条件积累了升高的Cr污染。这些与Cr(VI)污染相关的苛刻物理化学条件以各种方式损害生物系统。然而,几种独特的微生物属于系统发育遥远的分类群(细菌,真菌,和微藻)由于不同且非常独特的生理特性,可以在不同的物理化学环境中承受Cr(VI)的极限。这些具有挑战性的情况为环境和生物技术应用的极端微生物提供了巨大的潜力和扩展的熟练度。在这些问题上,本综述提请注意来自不同极端环境区域的Cr(VI)污染。该研究详细介绍了恶劣环境中耐Cr(VI)微生物的生态学和生物地理学,以及它们用于解毒Cr(VI)和其他应用的用途。这项研究还侧重于生理,多组学,和抗Cr(VI)极端微生物的基因工程方法。
    Chromium (Cr) compounds are usually toxins and exist abundantly in two different forms, Cr(VI) and Cr(III), in nature. Their contamination in any environment is a major problem. Many extreme environments including cold climate, warm climate, acidic environment, basic/alkaline environment, hypersaline environment, radiation, drought, high pressure, and anaerobic conditions have accumulated elevated Cr contamination. These harsh physicochemical conditions associated with Cr(VI) contamination damage biological systems in various ways. However, several unique microorganisms belonging to phylogenetically distant taxa (bacteria, fungi, and microalgae) owing to different and very distinct physiological characteristics can withstand extremities of Cr(VI) in different physicochemical environments. These challenging situations offer great potential and extended proficiencies in extremophiles for environmental and biotechnological applications. On these issues, the present review draws attention to Cr(VI) contamination from diverse extreme environmental regions. The study gives a detailed account on the ecology and biogeography of Cr(VI)-resistant microorganisms in inhospitable environments, and their use for detoxifying Cr(VI) and other applications. The study also focuses on physiological, multi-omics, and genetic engineering approaches of Cr(VI)-resistant extremophiles.
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  • 文章类型: Journal Article
    超过70%的地球被极端寒冷的环境所覆盖。滋养广泛多样的微生物生命。温度是最重要的参数,在我们星球上的微生物分布中起着关键作用。嗜冷微生物是寒冷生态系统中最突出的居民,它们具有潜在的冷活性酶,在研究和商业领域具有多种用途。嗜精神病患者被改造为培养,复制,并在低温下保持其活跃的代谢活动。它们的酶在低至足够的温度下具有最大活性的特征;该特征使它们在生物技术中更具吸引力和吸引力。低温酶的高酶活性意味着节能的重要特征。已证明这些酶比它们的嗜温和嗜热对应物更有利。因此,探索不同冷酶在食品加工中的效率和效用非常重要,制药,酿造,生物修复,和分子生物学。在这次审查中,我们专注于冷活性酶的特性及其在不同行业和研究领域的不同用途。这篇综述将深入了解冷活性酶的领域和特性,以便将潜在的和所需的酶用于商业目的。
    More than 70% of our planet is covered by extremely cold environments, nourishing a broad diversity of microbial life. Temperature is the most significant parameter that plays a key role in the distribution of microorganisms on our planet. Psychrophilic microorganisms are the most prominent inhabitants of the cold ecosystems, and they possess potential cold-active enzymes with diverse uses in the research and commercial sectors. Psychrophiles are modified to nurture, replicate, and retain their active metabolic activities in low temperatures. Their enzymes possess characteristics of maximal activity at low to adequate temperatures; this feature makes them more appealing and attractive in biotechnology. The high enzymatic activity of psychrozymes at low temperatures implies an important feature for energy saving. These enzymes have proven more advantageous than their mesophilic and thermophilic counterparts. Therefore, it is very important to explore the efficiency and utility of different psychrozymes in food processing, pharmaceuticals, brewing, bioremediation, and molecular biology. In this review, we focused on the properties of cold-active enzymes and their diverse uses in different industries and research areas. This review will provide insight into the areas and characteristics to be improved in cold-active enzymes so that potential and desired enzymes can be made available for commercial purposes.
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  • 文章类型: Journal Article
    随着现代科学技术的工业化和发展,酶及其应用日益广泛。人们总是在寻找具有新颖特性的新型高效酶,以满足各个工业部门的特定需求。随着高效率,酶的绿色和生态友好的一面吸引了人们的注意,因为它们形成了对抗有害和有毒的常规工业催化剂的真正答案。由于脂肪酶催化的水解和合成反应的范围广泛,因此一直受到工业关注。当这些催化性能伴随着温度稳定性等特征时,pH稳定性,和溶剂稳定性脂肪酶成为用于许多工业过程的合适工具。嗜极脂肪酶提供相同的功能,热稳定:冷热活性嗜热和嗜冷脂肪酶,耐酸和耐碱和活性的嗜酸和嗜碱脂肪酶,和耐盐嗜盐脂肪酶形成用于洗涤剂配方的优异的生物催化剂,生物燃料合成,酯合成,食品加工,制药,皮革,和造纸工业。这些脂肪酶的一个有趣的应用是在恶劣环境中脂质废物的生物修复。该综述简要介绍了各种极端脂肪酶,重点是嗜热,嗜冷,嗜盐,嗜碱性,和嗜酸性脂肪酶,他们的来源,生化特性,以及近几十年来的潜在应用。
    With industrialization and development in modern science enzymes and their applications increased widely. There is always a hunt for new proficient enzymes with novel properties to meet specific needs of various industrial sectors. Along with the high efficiency, the green and eco-friendly side of enzymes attracts human attention, as they form a true answer to counter the hazardous and toxic conventional industrial catalyst. Lipases have always earned industrial attention due to the broad range of hydrolytic and synthetic reactions they catalyse. When these catalytic properties get accompanied by features like temperature stability, pH stability, and solvent stability lipases becomes an appropriate tool for use in many industrial processes. Extremophilic lipases offer the same, thermostable: hot and cold active thermophilic and psychrophilic lipases, acid and alkali resistant and active acidophilic and alkaliphilic lipases, and salt tolerant halophilic lipases form excellent biocatalyst for detergent formulations, biofuel synthesis, ester synthesis, food processing, pharmaceuticals, leather, and paper industry. An interesting application of these lipases is in the bioremediation of lipid waste in harsh environments. The review gives a brief account on various extremophilic lipases with emphasis on thermophilic, psychrophilic, halophilic, alkaliphilic, and acidophilic lipases, their sources, biochemical properties, and potential applications in recent decades.
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  • 文章类型: Journal Article
    在我们努力寻找替代和更清洁的能源时,发现新型细菌菌株可能是释放木质纤维素生物炼油厂价值的纽带。细菌在木质纤维素分解中显示出希望,因为它们具有在最佳和极端条件下适应和生长的先天能力。这种细菌菌株的多功能性正在被利用,具有适应各种温度的品质,空气耐受性,和营养物质的可利用性驱动细菌在生物精炼厂研究中的使用。它们灵活的性质在生物技术领域拥有令人兴奋的前景,但是,尽管最近在木质纤维素生物质预处理和木质纤维素驱动的生物转化为增值产品方面取得了更绿色的优势,采用成本和随后在工业上扩大规模仍然对其采用构成挑战。然而,最近的研究已经看到了共同文化的使用,共同消化,和生物工程,以克服已确定的挫折,使用细菌菌株将木质纤维素分解成其主要聚合物,然后分解成有用的产品,从乙醇,酶,生物柴油,生物絮凝剂,和许多其他人。在这次审查中,对参与木质纤维素分解的细菌的研究进行了综述和总结,为进一步的研究提供了背景。探索了未来的前景,因为细菌在采用木质纤维素生物质的绿色能源替代品中可以发挥作用。
    Discovering novel bacterial strains might be the link to unlocking the value in lignocellulosic bio-refinery as we strive to find alternative and cleaner sources of energy. Bacteria display promise in lignocellulolytic breakdown because of their innate ability to adapt and grow under both optimum and extreme conditions. This versatility of bacterial strains is being harnessed, with qualities like adapting to various temperature, aero tolerance, and nutrient availability driving the use of bacteria in bio-refinery studies. Their flexible nature holds exciting promise in biotechnology, but despite recent pointers to a greener edge in the pretreatment of lignocellulose biomass and lignocellulose-driven bioconversion to value-added products, the cost of adoption and subsequent scaling up industrially still pose challenges to their adoption. However, recent studies have seen the use of co-culture, co-digestion, and bioengineering to overcome identified setbacks to using bacterial strains to breakdown lignocellulose into its major polymers and then to useful products ranging from ethanol, enzymes, biodiesel, bioflocculants, and many others. In this review, research on bacteria involved in lignocellulose breakdown is reviewed and summarized to provide background for further research. Future perspectives are explored as bacteria have a role to play in the adoption of greener energy alternatives using lignocellulosic biomass.
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  • 文章类型: Journal Article
    微生物脂肪酶由于其水解三酰甘油的通用催化功能而具有商业意义。其中,来自极端微生物的脂肪酶最适合工业应用。生活在高盐度环境中的嗜盐微生物,比如海洋,盐湖,盐井,等等,产生嗜盐脂肪酶。近几十年来,在嗜盐脂肪酶的性质和应用方面取得了许多令人瞩目的成就。这篇综述提供了过去几十年来收集的有关嗜盐脂肪酶来源以及生产进展的信息,影响活动的因素,在各种条件下的稳定性,结构特征,食品风味改性等工业应用的进展,生物柴油生产,和废物处理,为该方向的研究提供理论和方法参考。
    Microbial lipases are commercially significant due to their versatile catalytic function of hydrolysis triacylglycerol. Among these, lipases from extremophiles are optimal for industrial application. Halophilic microorganisms living in a high salinity environment, such as the ocean, salt lakes, salt wells, and so on, produce halophilic lipases. In recent decades, many remarkable achievements have been made related to the properties and application of halophilic lipases. This review offers information collected over the last decades on halophilic lipase sources as well as advances in production, factors influencing activity, stability under various conditions, structural characteristics, progress in industrial applications such as food flavor modification, biodiesel production, and waste treatment, to provide theoretical and methodological references for the research in this direction.
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  • 文章类型: Journal Article
    The review summarizes the available knowledge on toxins and their producers from rather disparate algal assemblages of aeroterrestrial, airborne and other versatile extreme environments (hot springs, deserts, ice, snow, caves, etc.) and on phycotoxins as contaminants of emergent concern in soil and plants. There is a growing body of evidence that algal toxins and their producers occur in all general types of extreme habitats, and cyanobacteria/cyanoprokaryotes dominate in most of them. Altogether, 55 toxigenic algal genera (47 cyanoprokaryotes) were enlisted, and our analysis showed that besides the \"standard\" toxins, routinely known from different waterbodies (microcystins, nodularins, anatoxins, saxitoxins, cylindrospermopsins, BMAA, etc.), they can produce some specific toxic compounds. Whether the toxic biomolecules are related with the harsh conditions on which algae have to thrive and what is their functional role may be answered by future studies. Therefore, we outline the gaps in knowledge and provide ideas for further research, considering, from one side, the health risk from phycotoxins on the background of the global warming and eutrophication and, from the other side, the current surge of interest which phycotoxins provoke due to their potential as novel compounds in medicine, pharmacy, cosmetics, bioremediation, agriculture and all aspects of biotechnological implications in human life.
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  • 文章类型: Journal Article
    每年,发现并分离了在不利环境中存活和定居的新生物。那些有机体,叫做极端微生物,分布在世界各地,在水生和陆地环境中,如含硫沼泽水,热液泉,深水,火山,陆地温泉,海洋盐池,盐湖,在其他人中。根据居住的生态系统,极端微生物被归类为嗜热菌,嗜冷者,嗜盐菌,嗜酸菌,嗜碱性,亲压电材料,嗜糖菌,金属和多极端微生物。他们开发了化学适应策略,使他们能够保持细胞完整性,改变生理或提高修复能力;其中之一是细胞外多糖(EPS)的生物合成,它们构成了保持细胞嵌入的粘液和水合基质,保护免受环境压力(干燥,盐度,温度,辐射)。EPS已经引起了人们的兴趣;它们通过其独特的特性进行了探索,如结构复杂性,生物降解性,生物活动,和生物相容性。这里,我们对生物合成进行了综述,表征,和极端微生物产生的潜在EPS应用,即,嗜热菌,嗜盐菌,和嗜冷者。进行了文献计量分析,考虑过去二十年内发表的研究文章。此外,极端微生物的培养条件概述,还介绍了其EPS的主要性能和多种潜在应用。
    Every year, new organisms that survive and colonize adverse environments are discovered and isolated. Those organisms, called extremophiles, are distributed throughout the world, both in aquatic and terrestrial environments, such as sulfurous marsh waters, hydrothermal springs, deep waters, volcanos, terrestrial hot springs, marine saltern, salt lakes, among others. According to the ecosystem inhabiting, extremophiles are categorized as thermophiles, psychrophiles, halophiles, acidophiles, alkalophilic, piezophiles, saccharophiles, metallophiles and polyextremophiles. They have developed chemical adaptation strategies that allow them to maintain their cellular integrity, altering physiology or improving repair capabilities; one of them is the biosynthesis of extracellular polysaccharides (EPS), which constitute a slime and hydrated matrix that keep the cells embedded, protecting from environmental stress (desiccation, salinity, temperature, radiation). EPS have gained interest; they are explored by their unique properties such as structural complexity, biodegradability, biological activities, and biocompatibility. Here, we present a review concerning the biosynthesis, characterization, and potential EPS applications produced by extremophile microorganisms, namely, thermophiles, halophiles, and psychrophiles. A bibliometric analysis was conducted, considering research articles published within the last two decades. Besides, an overview of the culture conditions used for extremophiles, the main properties and multiple potential applications of their EPS is also presented.
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  • 文章类型: Journal Article
    Polyhydroxyalkanoates (PHAs) are group monomers/heteropolymers that are biodegradable and widely used in biomedical applications. They are considered as alternatives to fossil derived polymers and accumulated by microbes including extremophilic archaea as energy storage inclusions under nutrient limitations. The use of extremophilic archaea for PHA production is an economically viable option for conventional aerobic processes, but less is known about their pathways and PHA accumulation capacities. This review summarized: (a) specific adaptive mechanisms towards extreme environments by extremophiles and specific role of PHAs; (b) understanding of PHA synthesis/metabolism in archaea and specific functional genes; (c) genetic engineering and process engineering approaches required for high-rate PHA production using extremophilic archaea. To conclude, the future studies are suggested to understand the membrane lipids and PHAs accumulation to explain the adaptation mechanism of extremophiles and exploiting it for commercial production of PHAs.
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