extremophiles

极端微生物
  • 文章类型: Journal Article
    随着地球变暖,传统农业的替代品至关重要。探索真菌,尤其是多极端和极端耐受的物种,用作植物益生菌,代表了一个有希望的选择。嗜极真菌为开发和生产创新生物肥料提供了途径,针对植物病原体的有效生物防治剂,和在极端条件下活跃的弹性酶,所有这些对于通过提高土壤肥力和减少对农用化学品的依赖来提高农业效率和可持续性至关重要。然而,嗜极端真菌的潜力仍未充分开发,因此,需要进行全面的研究,以了解它们作为在气候变化中促进可持续农业实践的工具的作用。努力应集中于揭示植物-真菌相互作用的复杂动态,并利用极端真菌的生态功能来影响植物的生长和发育。如植物的表观基因组重塑,真菌细胞外囊泡的产生,次生代谢调节,以及对原生土壤微生物群的影响是许多值得深入研究的地方之一。建议谨慎,然而,因为极端嗜性和极端耐受真菌既可以作为作物疾病的缓解剂,也可以作为机会病原体,强调平衡研究的必要性,以优化收益,同时降低农业环境中的风险。
    As the Earth warms, alternatives to traditional farming are crucial. Exploring fungi, especially poly extremophilic and extremotolerant species, to be used as plant probiotics, represents a promising option. Extremophilic fungi offer avenues for developing and producing innovative biofertilizers, effective biocontrol agents against plant pathogens, and resilient enzymes active under extreme conditions, all of which are crucial to enhance agricultural efficiency and sustainability through improved soil fertility and decreased reliance on agrochemicals. Yet, extremophilic fungi\'s potential remains underexplored and, therefore, comprehensive research is needed to understand their roles as tools to foster sustainable agriculture practices amid climate change. Efforts should concentrate on unraveling the complex dynamics of plant-fungi interactions and harnessing extremophilic fungi\'s ecological functions to influence plant growth and development. Aspects such as plant\'s epigenome remodeling, fungal extracellular vesicle production, secondary metabolism regulation, and impact on native soil microbiota are among many deserving to be explored in depth. Caution is advised, however, as extremophilic and extremotolerant fungi can act as both mitigators of crop diseases and as opportunistic pathogens, underscoring the necessity for balanced research to optimize benefits while mitigating risks in agricultural settings.
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  • 文章类型: Journal Article
    塑料在开放环境中积累,比如海洋,河流,和土地,几个世纪以来,但是它们的影响仅仅几十年来就引起了人们的关注。由于塑料污染对生态系统的负面影响,塑料污染是全球公众意识前沿的全球挑战。动物,人类健康,和国民经济。因此,人们对发展塑料生产的特定循环经济以及在适当的时间范围内使用后对塑料降解的绿色技术进行研究的兴趣有所增加。此外,由于所涉及的聚合物的物理化学性质,与传统塑料相比,生物降解塑料已被发现含有潜在的新危害。最近,塑料生物降解被定义为使用功能性微生物及其酶系统的微生物转化。这是一种将有机组分解聚成二氧化碳的有前途的策略,甲烷,水,新生物质,和其他更高价值的生物产品在有氧和缺氧条件下。这项研究回顾了微塑料污染,塑料使用的负面影响,以及目前用于塑料降解和微生物介导的生物降解的技术及其缺点;特别是,讨论了极端多产酶细菌在塑料分解协同系统中的重要和可疑作用。本研究强调了使用极端微生物增强塑料降解过程的关键点,如细胞疏水性,淀粉样蛋白,以及其他相关因素。在这篇综述中还提到了关于塑料降解过程中产生的生物产品的未知信息的新型机制的生物勘探,其目标是将来释放CO2和增加H2/CH4产量。根据分析的潜在因素,对于来自各种污染环境的不可培养/多产酶细菌和极端微生物的体外分离技术,可能会有新的想法。
    Plastics have accumulated in open environments, such as oceans, rivers, and land, for centuries, but their effect has been of concern for only decades. Plastic pollution is a global challenge at the forefront of public awareness worldwide due to its negative effects on ecological systems, animals, human health, and national economies. Therefore, interest has increased regarding specific circular economies for the development of plastic production and the investigation of green technologies for plastic degradation after use on an appropriate timescale. Moreover, biodegradable plastics have been found to contain potential new hazards compared with conventional plastics due to the physicochemical properties of the polymers involved. Recently, plastic biodegradation was defined as microbial conversion using functional microorganisms and their enzymatic systems. This is a promising strategy for depolymerizing organic components into carbon dioxide, methane, water, new biomass, and other higher value bioproducts under both oxic and anoxic conditions. This study reviews microplastic pollution, the negative consequences of plastic use, and the current technologies used for plastic degradation and biodegradation mediated by microorganisms with their drawbacks; in particular, the important and questionable role of extremophilic multi-enzyme-producing bacteria in synergistic systems of plastic decomposition is discussed. This study emphasizes the key points for enhancing the plastic degradation process using extremophiles, such as cell hydrophobicity, amyloid protein, and other relevant factors. Bioprospecting for novel mechanisms with unknown information about the bioproducts produced during the plastic degradation process is also mentioned in this review with the significant goals of CO2 evolution and increasing H2/CH4 production in the future. Based on the potential factors that were analyzed, there may be new ideas for in vitro isolation techniques for unculturable/multiple-enzyme-producing bacteria and extremophiles from various polluted environments.
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  • 文章类型: Journal Article
    从热液喷口,冰川,去沙漠,极端环境中的研究重塑了我们对生命如何以及在哪里可以持续的理解。包含在极端生物的基因组中是工具包的蓝图,以应对在恶劣环境中生存的众多挑战。随着新的测序技术的迅速发展,我们对促进极端微生物成功的分子和基因组机制的理解也是如此。尽管与细菌和古细菌相比,真核极端微生物仍然相对研究不足,越来越多的研究已经开始利用\'组学工具来揭示恶劣条件下的真核生物。在这篇透视论文中,我们强调了对真核生命树极端嗜性谱系的不同研究,从微生物到微生物,它们共同重塑了我们对生命极端分子创新的理解。这些研究不仅促进了我们对进化和生物过程的理解,而且还提供了一个有价值的路线图,说明如何应用新兴技术来识别细胞适应机制,以应对压力条件下的生活。包括高温和低温,有限的水供应,和重金属栖息地。我们揭示了整个真核生物树的分子和生物体适应模式,并讨论了一些有前途的研究方向。包括研究水平基因转移在真核极端微生物中的作用以及增加模型系统系统发育多样性的重要性。
    From hydrothermal vents, to glaciers, to deserts, research in extreme environments has reshaped our understanding of how and where life can persist. Contained within the genomes of extremophilic organisms are the blueprints for a toolkit to tackle the multitude of challenges of survival in inhospitable environments. As new sequencing technologies have rapidly developed, so too has our understanding of the molecular and genomic mechanisms that have facilitated the success of extremophiles. Although eukaryotic extremophiles remain relatively understudied compared to bacteria and archaea, an increasing number of studies have begun to leverage \'omics tools to shed light on eukaryotic life in harsh conditions. In this perspective paper, we highlight a diverse breadth of research on extremophilic lineages across the eukaryotic tree of life, from microbes to macrobes, that are collectively reshaping our understanding of molecular innovations at life\'s extremes. These studies are not only advancing our understanding of evolution and biological processes but are also offering a valuable roadmap on how emerging technologies can be applied to identify cellular mechanisms of adaptation to cope with life in stressful conditions, including high and low temperatures, limited water availability, and heavy metal habitats. We shed light on patterns of molecular and organismal adaptation across the eukaryotic tree of life and discuss a few promising research directions, including investigations into the role of horizontal gene transfer in eukaryotic extremophiles and the importance of increasing phylogenetic diversity of model systems.
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  • 文章类型: Journal Article
    各种天然盐和碱性生境最近被广泛研究,但是仍然缺乏具有更复杂环境条件的人为栖息地的知识。这项研究着眼于来自具有盐水和碱性成分的技术成因水体的18个底部沉积物样品中的微生物群落结构。岩心样品是从Verkhnekamskoe盐矿床(俄罗斯)的人造水体的西部和东部的2个柱中收集的。使用高通量16SrRNA基因测序研究了微生物群落结构。底部沉积物组成(盐度,pH值,和有毒元素含量)随整个研究区域的深度和横向变化很大。研究发现,2柱之间的细菌群落多样性存在相当大的差异,但是在研究层的各个深度的社区之间没有发现相当大的差异。变形杆菌,Firmicutes,和放线菌,这在天然和人造盐水和碱性环境中都很常见,构成了样本中发现的大多数细菌。研究表明,盐度和总碱度是影响微生物群落形成的关键因素。Ralstonia和假单胞菌是沉积物样品中最常见的两个属。这两个属以具有高代谢灵活性而闻名,这意味着它们可以在极端环境中生存,并使用各种碳化合物作为能源。该研究还发现,与其他样品相比,Ralstonia是有毒元素浓度最高的样品中的指示细菌。尽管存在极端的碱性和盐分条件,但在研究的人为水库中发现了相对较高的微生物多样性,但它比自然条件下的要低得多,碱性较低的栖息地。这项研究提供了对复杂的人为环境中微生物群落形成背后的机制的见解,并涵盖了微生物群落分布的关键因素。
    Various natural saline and alkaline habitats have recently been widely investigated, but knowledge of anthropogenic habitats with more complex environmental conditions is still lacking. This research looks at the structure of microbial communities in 18 bottom sediment samples from a technogenic water body with saline and alkaline composition. The core samples were collected from 2 columns in the western and eastern parts of an artificial water body at the Verkhnekamskoe Salt Deposit (Russia). The microbial community structure was studied using high-throughput 16S rRNA gene sequencing. The bottom sediment composition (salinity, pH, and toxic element content) varies greatly with depth and laterally throughout the study area. The study found a considerable difference in bacterial community diversity between the 2 columns, but no considerable difference was found between the communities at various depths of the studied layers. Proteobacteria, Firmicutes, and Actinobacteria, which are common in both natural and artificial saline and alkaline environments, make up the majority of the bacteria found in the samples. Studies have shown that salinity and total alkalinity are the key factors influencing the formation of microbial communities. Ralstonia and Pseudomonas were the two most common genera in the sediment samples. These two genera are known for having high metabolic flexibility, which means they can survive in extreme environments and use a variety of carbon compounds as energy sources. The study also found that Ralstonia is indicator bacteria in samples with the highest concentrations of toxic elements compared to the other samples. A relatively high microbial diversity was discovered in the studied anthropogenic water reservoir despite the extreme alkaline and saline conditions, but it is considerably lower than that found in natural, less alkaline habitats. This research offers insight into the mechanisms behind microbial community formation in complex anthropogenic environments and covers key factors in microbial community distribution.
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  • 文章类型: Journal Article
    嗜极端微生物在理解地球上的生命如何起源和进化几个世纪中起着关键作用。它们在恶劣环境中茁壮成长的能力依赖于为在极端温度下生存而开发的过多机制,压力,盐度,和pH值。从生物技术的角度来看,嗜热菌被认为是合成生物学的强大工具,也是开发可持续生物过程的可靠起始材料。这篇综述讨论了由嗜热微生物生物制造高附加值生物产品及其工业应用的最新进展。
    Extremophilic microorganisms play a key role in understanding how life on Earth originated and evolved over centuries. Their ability to thrive in harsh environments relies on a plethora of mechanisms developed to survive at extreme temperatures, pressures, salinity, and pH values. From a biotechnological point of view, thermophiles are considered a robust tool for synthetic biology as well as a reliable starting material for the development of sustainable bioprocesses. This review discusses the current progress in the biomanufacturing of high-added bioproducts from thermophilic microorganisms and their industrial applications.
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  • 文章类型: Journal Article
    Chichon火山包含几种热表现,包括酸性火山口湖。在这里,我们报告了“CandidatusAramenussp。”的宏基因组组装基因组。CH1,“一种来自Chichon火山的火山口湖的沙丁硫古细菌。在这项研究中,我们从墨西哥南部的一个热区产生了一个新的Aramenus基因组序列。
    The Chichon volcano contains several thermal manifestations including an acidic crater lake. Here we report a metagenome-assembled genome of \"Candidatus Aramenus sp. CH1,\" a Sulfolobales archaeon inhabiting the crater lake from the Chichon volcano. In this study, we generated a novel Aramenus genome sequence from a thermal area in Southern Mexico.
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  • 文章类型: Journal Article
    在深空探测时代,极端微生物研究代表了空间生存研究的一个关键领域。因此,这篇评论深入探讨了“太空和天文微生物学”这一有趣的领域,提供对微生物生存的见解,弹性,以及类似太空环境中的行为适应。本讨论包括极端微生物的改性行为,影响毒力,抗应力,和基因表达。然后转向最近对国际空间站和模拟微重力的研究,揭示影响药物敏感性的微生物反应,抗生素耐药性,及其商业影响。然后将评论过渡到Astro微生物学,探索行星际过境的可能性,精子症,和地形。关于生命起源和最近发现的火星陨石的争论被指出。我们还讨论了主动接种协议,用于选择适应性微生物作为地形先驱者。讨论以关于微生物在生物再生生命支持系统中作为生物工程师的作用的注释结束。回收有机废物以进行可持续的太空旅行;并促进最佳植物生长以准备火星和月球玄武岩。这篇文章强调了微生物对太空探索未来的革命性影响。
    In the era of deep space exploration, extremophile research represents a key area of research w.r.t space survival. This review thus delves into the intriguing realm of \'Space and Astro Microbiology\', providing insights into microbial survival, resilience, and behavioral adaptations in space-like environments. This discussion encompasses the modified behavior of extremophilic microorganisms, influencing virulence, stress resistance, and gene expression. It then shifts to recent studies on the International Space Station and simulated microgravity, revealing microbial responses that impact drug susceptibility, antibiotic resistance, and its commercial implications. The review then transitions into Astro microbiology, exploring the possibilities of interplanetary transit, lithopanspermia, and terraforming. Debates on life\'s origin and recent Martian meteorite discoveries are noted. We also discuss Proactive Inoculation Protocols for selecting adaptable microorganisms as terraforming pioneers. The discussion concludes with a note on microbes\' role as bioengineers in bioregenerative life support systems, in recycling organic waste for sustainable space travel; and in promoting optimal plant growth to prepare Martian and lunar basalt. This piece emphasizes the transformative impact of microbes on the future of space exploration.
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  • 文章类型: Journal Article
    地热特征,如温泉和泥火山,寄主不同的微生物生命,包括许多极端微生物。地热特征的物理化学参数,如温度,pH值,和重金属浓度,可以影响这些环境中微生物生命的α和β多样性,站点和采样之间的时空差异也是如此。在这项研究中,从黄石国家公园的八个地热地点收集和分析了水和沉积物样本,包括六个温泉,一座泥火山,在2019年7月的同一周内,一个酸性湖泊,这些地热地点的温度变化很大,pH值,和化学成分。用相同的方法和分类学谱以及用16SrRNA测序确定的α和β多样性度量来处理和分析所有样品。然后分析这些微生物多样性结果与pH值,温度,和地热特征的化学成分。结果表明,根据地热场地的物理化学组成,主要的微生物种类变化很大,随着pH值的降低和水中溶解重金属的增加,对应于α多样性的降低,尤其是在沉积物样本中.同样,与相对中性或碱性pH的地热站点相比,具有酸性pH值的站点彼此之间具有更多相似的微生物种群(β多样性)。这项研究表明,与这些地点的温度相比,pH和/或重金属浓度是微生物多样性和种群分布的更重要的驱动因素,也是黄石国家公园多个地热地点首次报道的微生物多样性研究。包括相对较新的泥火山黑龙Caldron,它在1948年爆发。
    Geothermal features, such as hot springs and mud volcanoes, host diverse microbial life, including many extremophile organisms. The physicochemical parameters of the geothermal feature, such as temperature, pH, and heavy metal concentration, can influence the alpha and beta diversity of microbial life in these environments, as can spatiotemporal differences between sites and sampling. In this study, water and sediment samples were collected and analyzed from eight geothermal sites at Yellowstone National Park, including six hot springs, a mud volcano, and an acidic lake within the same week in July 2019, and these geothermal sites varied greatly in their temperature, pH, and chemical composition. All samples were processed and analyzed with the same methodology and taxonomic profiles and alpha and beta diversity metrics determined with 16S rRNA sequencing. These microbial diversity results were then analyzed with respect to pH, temperature, and chemical composition of the geothermal features. Results indicated that predominant microbial species varied greatly depending on the physicochemical composition of the geothermal site, with decreases in pH and increases in dissolved heavy metals in the water corresponding to decreases in alpha diversity, especially in the sediment samples. Similarly, sites with acidic pH values had more similar microbial populations (beta diversity) to one another than to relatively neutral or alkaline pH geothermal sites. This study suggests that pH and/or heavy metal concentration is a more important driver for microbial diversity and population profile than the temperature for these sites and is also the first reported microbial diversity study for multiple geothermal sites in Yellowstone National Park, including the relatively new mud volcano Black Dragon\'s Caldron, which erupted in 1948.
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  • 文章类型: Journal Article
    膨润土是核废料深层地质储存库(DGR)中工程屏障系统(EBS)的组成部分,但其本土微生物可能会危及EBS的长期完整性。为了预测DGR中的微生物活性,了解微生物对DGR演化早期热期的反应至关重要。两种膨润土(BCV和MX-80),具有不同的膨润土/水比例和饱和度(压实至1600kg。m-3干密度/粉末/悬浮液),进行加热(90-150°C)和辐照(0.4Gy。h-1)在长期实验中(长达18个月)。分子遗传学,微观,和基于培养的技术评估微生物的生存能力。暴露于90°C和150°C显着降低微生物活力,无论膨润土形式如何,与辐射或样品类型相比,温度的影响可忽略不计。膨润土粉末样品在90°C加热长达6个月但在大多数情况下不是12个月后表现出微生物恢复;暴露于150°C具有更强的效果。建议在其他温度下进行进一步的长期实验,并结合DGR中温度演变的数学预测,以验证废物罐周围膨润土缓冲区中微生物耗尽区的可能演变和空间分布,并完善对微生物随时间变化的预测DGR。
    Bentonite is an integral part of the engineered barrier system (EBS) in deep geological repositories (DGR) for nuclear waste, but its indigenous microorganisms may jeopardize long-term EBS integrity. To predict microbial activity in DGRs, it is essential to understand microbial reactions to the early hot phase of DGR evolution. Two bentonites (BCV and MX-80) with varied bentonite/water ratios and saturation levels (compacted to 1600 kg.m- 3 dry density/powder/suspension), were subjected to heat (90-150 °C) and irradiation (0.4 Gy.h- 1) in the long-term experiments (up to 18 months). Molecular-genetic, microscopic, and cultivation-based techniques assessed microbial survivability. Exposure to 90 °C and 150 °C notably diminished microbial viability, irrespective of bentonite form, with negligible impacts from irradiation or sample type compared to temperature. Bentonite powder samples exhibited microbial recovery after 90 °C heating for up to 6 months but not 12 months in most cases; exposure to 150 °C had an even stronger effect. Further long-term experiments at additional temperatures combined with the mathematical prediction of temperature evolution in DGR are recommended to validate the possible evolution and spatial distribution of microbially depleted zones in bentonite buffer around the waste canisters and refine predictions of microbial effects over time in the DGR.
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  • 文章类型: Journal Article
    Idiomarinasp.PL1-037分离自皮尔斯湖,Rottnest岛,西澳大利亚。PL1-037的测序完整基因组由GC含量为47.1%的单个染色体(2,804,934bp)组成。Idiomarinasp.的分离。PL1-037提供了有关Pearse湖泊微生物组的可培养极端微生物的见解。
    Idiomarina sp. PL1-037 was isolated from Pearse Lakes, Rottnest Island, Western Australia. The sequenced completed genome for PL1-037 is composed of a single chromosome (2,804,934  bp) with a GC content of 47.1%. Isolation of Idiomarina sp. PL1-037 provides insights about culturable extremophiles from the Pearse lakes microbiome.
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