Genetic Testing

基因检测
  • 文章类型: Journal Article
    早发性共济失调(EOA)是一组罕见的神经系统疾病,不仅涉及中枢和周围神经系统,还涉及其他器官。它们主要表现为25岁之前发生的小脑退化或异常发育,通常遗传模式是常染色体隐性遗传。常染色体隐性遗传小脑共济失调(ARCAs)的诊断得到临床证实,实验室,电生理检查,神经影像学发现,以及检测到致病基因时的突变分析。正确的诊断对于适当的遗传咨询至关重要,估计预后,and,在某些情况下,药理干预。具有异质性表型表现的各种基因型使得诊断工作具有挑战性,耗时,而且昂贵,不仅为临床医生,也为孩子和他们的父母。在这次审查中,我们关注的是小脑共济失调是一个突出的征兆的循序渐进的方法。我们还概述了共济失调中最常见的早发性疾病。
    Early onset ataxias (EOAs) are a heterogeneous group of rare neurological disorders that not only involve the central and peripheral nervous system but also involve other organs. They are mainly manifested by degeneration or abnormal development of the cerebellum occurring before the age of 25 years and typically the pattern of inheritance is autosomal recessive.The diagnosis of autosomal recessive cerebellar ataxias (ARCAs) is confirmed by the clinical, laboratory, electrophysiological examination, neuroimaging findings, and mutation analysis when the causative gene is detected. Correct diagnosis is crucial for appropriate genetic counseling, estimating the prognosis, and, in some cases, pharmacological intervention. The wide variety of genotypes with a heterogeneous phenotypic manifestation makes the diagnostic work-up challenging, time-consuming, and expensive, not only for the clinician but also for the children and their parents. In this review, we focused on the step-by-step approach in which cerebellar ataxia is a prominent sign. We also outline the most common disorders in ataxias with early-onset manifestations.
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  • 文章类型: Journal Article
    目的:了解骨髓增生异常综合征(MDS)和AML的遗传易感性对治疗决策具有重要的临床意义,监视,和照顾有风险的亲戚。国家综合癌症网络(NCCN)指南最近纳入了根据个人和家族史特征对MDS/AML患者进行种系遗传评估的建议。但是尚未研究实施这些建议的实用性。
    方法:成立了遗传性血液学质量改善(QI)委员会,以在诊断为MDS/AML的患者的前瞻性队列中实施这些指南。对于符合NCCN指南标准的患者,建议转诊进行种系基因检测。将转诊模式和遗传评估结果与MDS/AML患者的历史队列进行比较。确定了评估的障碍。
    结果:在QI委员会评估的90例MDS/AML患者中,59(66%)符合种系评估标准。QI委员会的实施导致根据NCCN指南(31%v14%,P=.03)。然而,在QI委员会提出建议时,大多数符合标准的患者从未因医学敏锐度高或死亡或临终关怀而被转诊.尽管如此,接受基因检测的12例患者中有2例(17%)被诊断为遗传性髓系恶性肿瘤综合征.
    结论:目前的NCCN指南导致三分之二的MDS/AML患者符合种系评估标准。以遗传性血液学为重点的QI委员会为初步实施提供了帮助,并适度改善了NCCN指南的依从性。然而,与MDS/AML相关的高发病率和高死亡率以及住院时间延长对传统的门诊遗传咨询模式提出了挑战.指南依从性的进一步改善需要为该患者群体创新遗传咨询和测试的新模式。
    OBJECTIVE: Knowledge of an inherited predisposition to myelodysplastic syndrome (MDS) and AML has important clinical implications for treatment decisions, surveillance, and care of at-risk relatives. National Comprehensive Cancer Network (NCCN) guidelines recently incorporated recommendations for germline genetic evaluation of patients with MDS/AML on the basis of personal and family history features, but the practicality of implementing these recommendations has not been studied.
    METHODS: A hereditary hematology quality improvement (QI) committee was formed to implement these guidelines in a prospective cohort of patients diagnosed with MDS/AML. Referral for germline genetic testing was recommended for patients meeting NCCN guideline criteria. Referral patterns and genetic evaluation outcomes were compared with a historical cohort of patients with MDS/AML. Barriers to evaluation were identified.
    RESULTS: Of the 90 patients with MDS/AML evaluated by the QI committee, 59 (66%) met criteria for germline evaluation. Implementation of the QI committee led to more referrals for germline evaluation in accordance with NCCN guidelines (31% v 14%, P = .03). However, the majority of those meeting criteria were never referred due to high medical acuity or being deceased or in hospice at the time of QI committee recommendations. Despite this, two (17%) of the 12 patients undergoing genetic testing were diagnosed with a hereditary myeloid malignancy syndrome.
    CONCLUSIONS: Current NCCN guidelines resulted in two thirds of patients with MDS/AML meeting criteria for germline evaluation. A hereditary hematology-focused QI committee aided initial implementation and modestly improved NCCN guideline adherence. However, the high morbidity and mortality and prolonged inpatient stays associated with MDS/AML challenged traditional outpatient genetic counseling models. Further improvements in guideline adherence require innovating new models of genetic counseling and testing for this patient population.
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  • 文章类型: Journal Article
    背景:CanRisk工具,临床遗传学家使用了疾病发病率和载体估计算法(BOADICEA)的乳房和卵巢分析,遗传顾问,乳腺肿瘤学家,外科医生和家族史护士在国内和国际上进行乳腺癌风险评估。目前没有关于CanRisk的日常临床应用的指南,并且模型的不同输入可能导致不同的实践建议。
    方法:为了解决这个问题,英国癌症遗传学小组与乳腺外科协会和CanGene-CanVar计划合作,于2023年5月16日举办了一个研讨会,旨在制定最佳实践指南.
    结果:使用研讨会前调查,然后进行结构化讨论和会议投票,我们就使用CanRisk为乳腺癌监测提供建议的英国最佳实践达成了共识,基因检测的资格和输入可用信息以进行个性化风险评估。
    结论:在达成共识建议的同时,会议强调了限制在临床实践中使用CanRisk的一些障碍,并确定了需要与相关国家机构和政策制定者进一步合作和合作以将CanRisk更广泛地使用纳入常规乳腺癌风险评估的领域。
    BACKGROUND: The CanRisk tool, which operationalises the Breast and Ovarian Analysis of Disease Incidence and Carrier Estimation Algorithm (BOADICEA) is used by Clinical Geneticists, Genetic Counsellors, Breast Oncologists, Surgeons and Family History Nurses for breast cancer risk assessments both nationally and internationally. There are currently no guidelines with respect to the day-to-day clinical application of CanRisk and differing inputs to the model can result in different recommendations for practice.
    METHODS: To address this gap, the UK Cancer Genetics Group in collaboration with the Association of Breast Surgery and the CanGene-CanVar programme held a workshop on 16th of May 2023, with the aim of establishing best practice guidelines.
    RESULTS: Using a pre-workshop survey followed by structured discussion and in-meeting polling, we achieved consensus for UK best practice in use of CanRisk in making recommendations for breast cancer surveillance, eligibility for genetic testing and the input of available information to undertake an individualised risk assessment.
    CONCLUSIONS: Whilst consensus recommendations were achieved, the meeting highlighted some of the barriers limiting the use of CanRisk in clinical practice and identified areas that require further work and collaboration with relevant national bodies and policy makers to incorporate wider use of CanRisk into routine breast cancer risk assessments.
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  • 文章类型: Journal Article
    目的:本文件涉及下一代测序(NGS)技术在产前基因诊断中的临床应用,旨在在西班牙建立临床实践建议,以确保在产前护理中实施这些技术的一致性。
    方法:成立了一个由产科医生和遗传学家组成的联合委员会,以审查有关胎儿NGS基因诊断的现有文献,并为西班牙医疗保健专业人员提出建议。
    结果:本指南总结了NGS技术的技术方面,产前环境的临床指征,关于要报告的调查结果的考虑,遗传咨询考虑因素以及数据存储和保护政策。
    结论:本文件提供了在产前诊断中使用NGS诊断测试的最新建议。作为我们对NGS技术的临床实用性的了解,应定期审查这些建议。在怀孕期间应用,可以前进。
    OBJECTIVE: This document addresses the clinical application of next-generation sequencing (NGS) technologies for prenatal genetic diagnosis and aims to establish clinical practice recommendations in Spain to ensure uniformity in implementing these technologies into prenatal care.
    METHODS: A joint committee of expert obstetricians and geneticists was created to review the existing literature on fetal NGS for genetic diagnosis and to make recommendations for Spanish healthcare professionals.
    RESULTS: This guideline summarises technical aspects of NGS technologies, clinical indications in prenatal setting, considerations regarding findings to be reported, genetic counselling considerations as well as data storage and protection policies.
    CONCLUSIONS: This document provides updated recommendations for the use of NGS diagnostic tests in prenatal diagnosis. These recommendations should be periodically reviewed as our knowledge of the clinical utility of NGS technologies, applied during pregnancy, may advance.
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  • 文章类型: Journal Article
    单亲二体(UPD)相关的印记障碍是一组先天性疾病,可导致严重的出生缺陷。它们的分子病因是在基因组印记区域发生UPD,这可能会导致亲本印迹基因的表达受到干扰。随着基因检测技术的广泛应用,UPD相关印迹疾病的产前诊断已逐渐成为临床常规。然而,由于这些疾病的复杂发病机制,目前仍然缺乏理解的标准和规范,诊断,管理和遗传咨询。通过参考相关准则和共识,研究的最新进展,以及相关领域专家的意见,写作小组就UPD相关印记障碍的产前诊断和遗传咨询达成共识,目的是在产前诊所提供更准确和合理的评估。
    Uniparental disomy (UPD)-related imprinting disorders are a group of congenital disorders which can lead to severe birth defects. Their molecular etiology is the occurrence of UPD in the genomic imprinting regions, which may cause disturbed expression of parent-of-origin imprinted genes. With the widespread applications of genetic testing techniques, the prenatal diagnosis of UPD-related imprinted diseases has gradually become clinical routines. However, due to the complicated pathogenesis of such disorders, currently there is still a lack of standards and norms for the understanding, diagnosis, management and genetic counseling. By referring to the relevant guidelines and consensus, the latest progress of research, and opinions from experts in the relevant fields, the writing group has formulated a consensus over the prenatal diagnosis and genetic counseling for UPD-related imprinting disorders, with an aim to provide a more accurate and rational evaluation in prenatal clinics.
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  • 文章类型: Journal Article
    α-地中海贫血是一种由α-珠蛋白基因变异引起的小细胞低色素性贫血,是中国南方最常见的单基因疾病之一。基于血液学表型的人群筛查模型在地中海贫血高发地区取得了较好的效果。然而,随着基因检测成本的不断下降和地中海贫血基因携带者筛查计划的实施,已经发现了更多的α-珠蛋白基因变体,这也给临床遗传咨询带来了巨大的挑战。从α-珠蛋白遗传分析的角度来看,这一共识讨论了测试前和测试后遗传咨询的内容,旨在为临床医生提供标准化指导。
    α-thalassemia is a type of microcytic hypochromic anemia caused by variants of alpha-globin gene, and is one of the most common monogenic disorders in southern China. The population screening model based on hematologic phenotype has achieved great results in areas with high incidence of thalassemia. However, with the continuous decline of the cost of genetic testing and implementation of screening programs for thalassemia gene carriers, more variants in the alpha-globin gene have been discovered, which also brings great challenges to clinical genetic counseling. From the perspective of alpha-globin genetic analysis, this consensus has discussed the contents of pre- and post-test genetic counseling, with an aim to provide standardized guidance for clinicians.
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  • 文章类型: Journal Article
    脊髓性肌萎缩症(SMA),携带频率为1/60~1/40的常染色体隐性遗传性神经肌肉疾病,临床症状严重,死亡率高,和昂贵的治疗费用。携带者筛查对于发现高风险夫妇至关重要,从而减少SMA的发生。在中国,SMA载体筛选已变得普遍,尽管遗传咨询仍然缺乏专业知识。本文重点介绍了目前SMA载体筛选面临的挑战,包括筛选方法,目标人群,筛选程序,和测试前/测试后咨询。目的是规范其在临床实践中的应用和咨询。
    Spinal muscular atrophy (SMA), an autosomal recessive neuromuscular disease with a carrier frequency of 1/60 ~ 1/40, is characterized by severe clinical symptoms, high mortality rate, and expensive treatment costs. Carrier screening is of paramount importance to detect high-risk couples, and therefore to reduce the occurrence of SMA. In China, SMA carrier screening has become widespread, though there is still a lack of genetic counseling expertise. This article has focused on the current challenges for SMA carrier screening, including the screening methods, target population, screening procedures, and pre-/post-testing counseling. The aim is to standardize its application and counseling in the clinical practice.
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  • 文章类型: Journal Article
    由DMD基因变异引起的肌营养不良蛋白病是一组肌肉疾病,包括Duchenne型肌营养不良症,Becker肌营养不良症,和DMD相关的扩张型心肌病。随着基因检测技术的进步和基因筛查的广泛实施,特别是扩大的载体筛选,越来越多的携带DMD基因变异的个体被鉴定出来,而遗传咨询能力相对不足。目前,对于肌萎缩蛋白病的遗传咨询仍然缺乏专业规范。在这个共识中,已经讨论了测试前和测试后咨询中应涵盖的要点,旨在为疾病诊断提供遗传咨询指导,治疗,和家庭繁殖。
    Dystrophinopathies caused by variants of DMD gene are a group of muscular diseases including Duchenne muscular dystrophy, Becker muscular dystrophy, and DMD-associated dilated cardiomyopathy. With the advancement of genetic testing techniques and wider implementation of genetic screening, especially the expanded carrier screening, more and more individuals carrying DMD gene variants have been identified, whereas the genetic counseling capacity is relatively insufficient. Currently there is still a lack of professional norms for genetic counseling on dystrophinopathies. In this consensus, the main points to be covered in the pre- and post-test consultation have been discussed, with an aim to provide genetic counseling guidance for the disease diagnosis, treatment, and family reproduction.
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  • 文章类型: Journal Article
    Objective: To compare the differences between the variation interpretation standards and guidelines issued by the American College of Medical Genetics and Genomics (ACMG) and the Association for Molecular Pathology (AMP) in 2015 (The 2015ACMG/AMP guideline) and the Deafness Specialist Group of the Clinical Genome Resource (ClinGen) in 2018 for hereditary hearing loss (Healing loss, HL) issued the expert specification of the variation interpretation guide (The 2018 HL-EP guideline) in evaluating the pathogenicity of OTOF gene variation in patients with auditory neuropathy. Methods: Thirty-eight auditory neuropathy patients with OTOF gene variant were selected as the study subjects (23 males and 15 females, aged 0.3-25.9 years). Using whole-genome sequencing, whole exome sequencing or target region sequencing (Panel) combined with Sanger sequencing, 38 cases were found to carry more than two OTOF mutation sites. A total of 59 candidate variants were independently interpreted based on the 2015 ACMG/AMP guideline and 2018 HL-EP guideline. Compared with the judgment results in 2015 ACMG/AMP guideline, the variants interpreted as lower pathogenic classifications in the 2018 HL-EP guideline were defined as downgraded variants, and the variants regarded as higher pathogenic classifications were defined as upgraded variants. Statistical analysis was conducted using SPSS 20.0. Results: The concordance rate of variant classification between the guidelines was 72.9%(43/59). The 13.6%(8/59) of variants were upgraded and 13.6% (8/59) of variants downgraded in the classifications of the 2018 HL-EP guideline. A couple of rules saw significant differences between the guidelines (PVS1, PM3, PP2, PP3 and PP5). The distribution of pathogenicity of splicing mutation was statistically different (P=0.013). Conclusions: The 2018 HL-EP guideline is inconsistent with the 2015 ACMG/AMP guideline, when judging the pathogenicity of OTOF gene variants in patients with auditory neuropathy. Through the deletion and refinement of evidence and the breaking of solidification thinking, the 2018 HL-EP guideline makes the pathogenicity grading more traceable and improves the credibility.
    目的: 对比2015年美国医学遗传学与基因组学学会(American College of Medical Genetics and Genomics,ACMG)和分子病理学会(Association for Molecular Pathology,AMP)发布的变异解读标准与指南(本文中简称2015 ACMG/AMP指南)与2018年临床基因组资源中心(Clinical Genome Resource,ClinGen)耳聋专病小组针对遗传性听力损失(hearing loss,HL)发布的变异解读指南专家规范(本文中简称2018HL专病指南)在评估听神经病患者OTOF基因变异致病性中的异同。 方法: 以38例OTOF基因变异听神经病患者作为研究对象(男23例、女15例,年龄范围0.3~25.9岁),经全基因组重测序、全外显子组测序或目标区域靶向(Panel)测序结合一代Sanger测序验证,38例听神经病患者均检出携带两个以上OTOF变异位点,共计59个候选位点,分别使用2015ACMG/AMP指南以及2018HL专病指南对其致病性进行判断。与2015年指南判断结果相比,2018年指南判断的致病性等级更强定义为升级,更弱定义为降级。采用SPSS 20.0软件进行统计学分析。 结果: 2015 ACMG/AMP指南和2018 HL专病指南的变异分类一致率为72.9%(43/59)。致病性升级变异位点占13.6%(8/59),致病性降级变异位点占13.6%(8/59)。两指南致病性判定不一致主要集中在PVS1、PM3、PP2、PP3以及PP5等级证据的应用上。剪接变异、错义变异、框内插入/缺失以及同义变异致病性分布发生改变,其中剪接变异改变差异具有统计学意义(P=0.013)。 结论: 针对听神经病患者OTOF基因变异进行致病性判断时,2018HL专病指南与2015ACMG/AMP指南存在不一致,2018HL专病指南对证据进行删减及进一步细分,打破常规对于变异类型的固化思维,使得致病性分级更有迹可循,提高可信度。.
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  • 文章类型: Journal Article
    背景:Li-Fraumeni综合征(LFS)是一种与包括骨肉瘤和乳腺癌(BC)在内的年轻人中许多肿瘤类型的发展相关的渗透性癌症易感性综合征(CPS)。McGill交互式儿科肿瘤遗传学指南(MIPOGG)决策支持工具提供了一种标准化方法来识别有CPS风险的患者。
    方法:我们进行了成本效用分析,从医疗保健支付者的角度来看,为了比较MIPOGG引导的,医生指导,和通用基因检测策略,以检测年龄小于18岁的骨肉瘤女性患者的LFS。我们开发了决策树和离散事件模拟模型,以模拟被诊断为骨肉瘤的女性儿童队列的三种遗传转诊策略的临床和成本结果。尤其是关注BC作为后续癌症。结果包括BC发病率,质量调整寿命年(QALYs),医疗费用,和增量成本效用比(ICURs)。我们进行了概率和情景分析,以评估围绕模型参数的不确定性。
    结果:与医生指导的测试相比,MIPOGG指导的策略稍微贵了105美元(-516美元;743美元),但在0.003(-0.04;0.045)QALYs时更有效。与MIPOGG相比,通用测试策略的成本为$1333($732;$1953),且与0.011(-0.043;0.064)额外QALYs相关.与医师策略相比,MIPOGG策略的ICUR为$33,947/QALY;与MIPOGG策略相比,通用测试策略的ICUR为$118,631/QALY。
    结论:这项研究为临床和政策决策提供了证据,以确定骨肉瘤患者的遗传转诊策略的成本效益。MIPOGG指导的战略最有可能在50,000美元/QALY的支付意愿阈值下具有成本效益。
    BACKGROUND: Li-Fraumeni syndrome (LFS) is a penetrant cancer predisposition syndrome (CPS) associated with the development of many tumor types in young people including osteosarcoma and breast cancer (BC). The McGill Interactive Pediatric OncoGenetic Guidelines (MIPOGG) decision-support tool provides a standardized approach to identify patients at risk of CPSs.
    METHODS: We conducted a cost-utility analysis, from the healthcare payer perspective, to compare MIPOGG-guided, physician-guided, and universal genetic testing strategies to detect LFS in female patients diagnosed at an age of less than 18 years with osteosarcoma. We developed a decision tree and discrete-event simulation model to simulate the clinical and cost outcomes of the three genetic referral strategies on a cohort of female children diagnosed with osteosarcoma, especially focused on BC as subsequent cancer. Outcomes included BC incidence, quality-adjusted life-years (QALYs), healthcare costs, and incremental cost-utility ratios (ICURs). We conducted probabilistic and scenario analyses to assess the uncertainty surrounding model parameters.
    RESULTS: Compared to the physician-guided testing, the MIPOGG-guided strategy was marginally more expensive by $105 (-$516; $743), but slightly more effective by 0.003 (-0.04; 0.045) QALYs. Compared to MIPOGG, the universal testing strategy was $1333 ($732; $1953) more costly and associated with 0.011 (-0.043; 0.064) additional QALYs. The ICUR for the MIPOGG strategy was $33,947/QALY when compared to the physician strategy; the ICUR for universal testing strategy was $118,631/QALY when compared to the MIPOGG strategy.
    CONCLUSIONS: This study provides evidence for clinical and policy decision-making on the cost-effectiveness of genetic referral strategies to identify LFS in the setting of osteosarcoma. MIPOGG-guided strategy was most likely to be cost-effective at a willingness-to-pay threshold value of $50,000/QALY.
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