Genetic Testing

基因检测
  • 文章类型: Case Reports
    背景:Nephronophisis(NPHP)是一种常染色体隐性遗传疾病,有一部分患者表现为肾外表现,如视网膜变性,小脑共济失调,肝纤维化,骨骼异常,心脏畸形,和肺支气管扩张.然而,其他器官系统的参与也有记录。肾外表现发生在大约10-20%的患者中。在发达国家,据报道,在生命的前三十年中,它是单基因慢性肾衰竭(CKF)的最常见原因之一,有超过25个基因与这种情况有关。目前管理NPHP的治疗方案包括支持治疗,并发症的管理,必要时进行肾脏替代疗法。索引患者是一名10岁的白人女性,她反复发作腹痛。她的姐姐,TN,17岁,被诊断为CKF,并注意到肝酶持续升高(γ-谷氨酰转移酶,丙氨酸,和天冬氨酸转氨酶)。基因检测后,她的姐姐被证明患有3型Nephronophisis,肝活检显示早期纤维化变化。随后的基因检测证实该指标患者患有NPHP3型。肾脏活检显示局灶性硬化的肾小球,伴有肾小管萎缩的斑片状区域和相关的肾小管间质变化,与NPHP保持一致。我们介绍了第一例来自南非的NPHP的确诊病例,该病例基于组织病理学和基因检测,在一名10岁的白人女性中表现出反复发作的腹痛,他的姐姐也出现了CKF和早期肝纤维化,活检和基因检测证实。
    结论:在中低收入国家,应尽可能进行基因检测以确认NPHP的诊断,尤其是那些提示活检或病因不明的CKF伴或不伴肾外表现的患者。
    BACKGROUND: Nephronophthisis (NPHP) is an autosomal recessive disorder with a subset of patients presenting with extrarenal manifestations such as retinal degeneration, cerebella ataxia, liver fibrosis, skeletal abnormalities, cardiac malformations, and lung bronchiectasis. However, the involvement of other organ systems has also been documented. Extrarenal manifestations occur in approximately 10-20% of patients. In developed countries, it has been reported as one of the most common causes of monogenic chronic kidney failure (CKF) during the first three decades of life, with more than 25 genes associated with this condition. The current treatment options for managing NPHP include supportive care, management of complications, and kidney replacement therapy when necessary. The index patient is a 10-year-old Caucasian female who presented with recurrent attacks of abdominal pain. Her elder sister, TN, who was 17 years old, was diagnosed with CKF and noted to have persistently elevated liver enzymes (gamma-glutamyl transferase, alanine, and aspartate transaminases). Following genetic testing, her elder sister was shown to have Nephronophthisis Type 3, and a liver biopsy showed early fibrotic changes. Subsequent genetic testing confirmed the index patient as having NPHP Type 3. A kidney biopsy showed focal sclerosed glomeruli with patchy areas of tubular atrophy and related tubulointerstitial changes in keeping with NPHP. We present the first confirmatory case of NPHP from South Africa based on histopathology and genetic testing in a 10-year-old Caucasian female who presented with recurrent attacks of abdominal pain, whose elder sister also presented with CKF and early liver fibrosis, confirmed on biopsy and genetic testing.
    CONCLUSIONS: In low-middle-income countries, genetic testing should be undertaken whenever possible to confirm the diagnosis of NPHP, especially in those with a suggestive biopsy or if there is CKF of unknown aetiology with or without extra-renal manifestations.
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  • 文章类型: Case Reports
    克罗恩病(CD)是一种影响消化道的炎症性肠病,其发病率在世界范围内呈上升趋势。血友病最常见的临床表现是继发于复发性关节积液和慢性滑膜炎的关节病。本文报道了一名罕见的25岁男性患者,患有血友病性关节病和克罗恩病,有致病性胃肠道出血的风险。在接受内镜病理检查和基因检测后,对治疗和营养计划进行了多学科专家整理.患者临床好转,坚持保守治疗。此病例报告是这种罕见的合并症的首次报告,展示高致病性突变位点,总结早期诊断和治疗的临床经验。
    Crohn\'s disease (CD) is an inflammatory bowel disease affecting the digestive tract, the incidence of which is on the rise worldwide. The most common clinical manifestation of hemophilia is arthropathy secondary to recurrent joint effusions and chronic synovitis. This article reports on a rare 25-year-old male patient with both hemophilic arthropathy and Crohn\'s disease who was at risk for pathogenic gastrointestinal bleeding. After undergoing endoscopic pathologic testing and genetic testing, a multidisciplinary expert work-up of a treatment and nutritional plan was performed. The patient improved clinically and adhered to conservative treatment. This case report is the first report of this rare co-morbidity, demonstrating the highly pathogenic mutation locus and summarizing the clinical experience of early diagnosis and treatment.
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  • 文章类型: Case Reports
    先天性四肢和面部挛缩,低张力,和发育迟缓(CLIFAHDD)综合征(OMIM#616266)是一种常染色体显性遗传性疾病,可导致四肢和面部的先天性挛缩,低张力,和发育迟缓。此外,它可能导致生长迟缓并出现各种临床症状,比如脑萎缩,一个小脑垂体,肌肉骨骼异常,呼吸异常,腹疝,和异常的面部特征。在这里,我们描述了钠泄漏通道中的一种新的从头错义遗传变异,与CLIFAHDD综合征相关的非选择性(NALCN)基因。
    这项研究描述了一位双脚内翻畸形的患者,手指尺侧的偏差,和严重的低张力症.该患者随后通过基因检测被证实患有CLIFAHDD综合征,这也揭示了NALCN基因中的一种新的从头错义遗传变异(c.3553G>A,p.Ala1185Thr)。
    我们的发现进一步丰富了NALCN基因的已知变异谱,并可能扩大治疗NALCN相关疾病的临床选择范围。
    UNASSIGNED: Congenital contractures of the limbs and face, hypotonia, and developmental delay (CLIFAHDD) syndrome (OMIM #616266) is an autosomal dominant hereditary disease that can lead to the congenital contracture of the limbs and face, hypotonia, and developmental delay. In addition, it may result in growth retardation and present various clinical symptoms, such as brain atrophy, a small pituitary gland, musculoskeletal abnormalities, abnormal breathing, abdominal hernia, and abnormal facial features. Herein, we describe a novel de novo missense genetic variant in the sodium leak channel, non-selective (NALCN) gene that is associated with CLIFAHDD syndrome.
    UNASSIGNED: This study describes a patient with varus deformities in both feet, deviation of the ulnar side of the fingers, and severe hypotonia. This patient was subsequently confirmed to have CLIFAHDD syndrome through genetic testing, which also revealed a novel missense de novo genetic variant in the NALCN gene (c.3553G > A, p.Ala1185Thr).
    UNASSIGNED: Our findings further enrich the known variant spectrum of the NALCN gene and may expand the range of clinical options for treating NALCN-related disorders.
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  • 文章类型: Case Reports
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  • 文章类型: Case Reports
    钠通道8α(SCN8A)突变包括一系列具有不同临床表现的癫痫表型,提出诊断挑战。我们介绍了一例9岁男性,患有SCN8A基因相关的发育性和癫痫性脑病(DEE),以婴儿期以来的全身性强直阵挛性癫痫发作(GTCS)为特征。尽管用多种抗癫痫药物(AED)治疗,包括苯妥英,丙戊酸盐,左乙拉西坦,卡马西平,还有Cobazam,癫痫发作控制仍然难以捉摸,促使基因检测。全外显子组测序证实了杂合突变(p。Phe210Ser)在SCN8A外显子6中,指示DEE-13。功能研究揭示了SCN8A变体的功能获得机制,导致离子通道活性增强和激活的电压依赖性改变。尽管治疗调整,患者的癫痫发作持续到托吡酯被引入,提供部分救济。SCN8A,编码Nav1.6钠通道,调节神经元兴奋性,突变导致持续电流增加和过度兴奋。早期癫痫发作和发育迟缓是SCN8A相关DEE的标志。这个案例突出了基因检测在难治性癫痫治疗中的重要性,指导个性化治疗策略。钠通道阻滞剂如苯妥英和卡马西平通常是一线治疗,而托吡酯是SCN8A相关DEE的潜在辅助选择。总的来说,该病例强调了SCN8A相关癫痫性脑病的诊断和治疗复杂性,强调长期监测和个性化治疗方法对优化难治性癫痫结局的重要性.
    Sodium channel 8 alpha (SCN8A) mutations encompass a spectrum of epilepsy phenotypes with diverse clinical manifestations, posing diagnostic challenges. We present a case of a nine-year-old male with SCN8A gene-associated developmental and epileptic encephalopathies (DEEs), characterized by generalized tonic-clonic seizures (GTCS) since infancy. Despite treatment with multiple antiepileptic drugs (AEDs), including phenytoin, valproate, levetiracetam, carbamazepine, and clobazam, seizure control remained elusive, prompting genetic testing. Whole exome sequencing confirmed a heterozygous mutation (p.Phe210Ser) in SCN8A exon 6, indicative of DEE-13. Functional studies revealed a gain-of-function mechanism in SCN8A variants, resulting in heightened ion channel activity and altered voltage dependence of activation. Despite treatment adjustments, the patient\'s seizures persisted until topiramate was introduced, offering partial relief. SCN8A, encoding Nav1.6 sodium channels, modulates neuronal excitability, with mutations leading to increased persistent currents and hyperexcitability. Early seizure onset and developmental delays are hallmarks of SCN8A-related DEE. This case highlights the significance of genetic testing in refractory epilepsy management, guiding personalized treatment strategies. Sodium channel blockers like phenytoin and carbamazepine are often first-line therapies, while topiramate presents as a potential adjunctive option in SCN8A-related DEE. Overall, this case underscores the diagnostic and therapeutic complexities of managing SCN8A-related epileptic encephalopathy, emphasizing the importance of long-term monitoring and personalized treatment approaches for optimizing outcomes in refractory epilepsy.
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  • 文章类型: Case Reports
    可手术的三阴性乳腺癌(TNBC)是一种不利的乳腺癌亚型,这通常需要积极的围手术期全身治疗。当TNBC成为治愈急性白血病后的第二原发癌时,它的管理可能具有挑战性。
    我们提供了一例年轻的绝经后妇女,患有可手术的TNBC,她有B细胞急性淋巴细胞白血病(B-ALL)和移植物抗宿主病(GVHD)的病史。异基因干细胞移植(allo-SCT)。既往有蒽环类药物和放射疗法以及GVHD的治疗史限制了使用阿霉素治疗她的TNBC。由于GVHD的历史,省略了pembrolizumab的围手术期治疗.基因测试是具有挑战性的,因为在allo-SCT后,她的组织可能被捐献者的细胞污染。在我们病人的口腔拭子样本中,外周血,和肿瘤组织,在BRCA2(PALB2)基因的伴侣和定位基因中发现了致病变体。新辅助化疗包括卡铂,达到病理完全缓解.虽然我们的病人TNBC复发的风险很低,她发展新的原发性癌症的风险仍然很大。
    这个案例突出了系统治疗的挑战,基因检测,并对有急性白血病病史的可手术TNBC和其他实体癌患者进行随访。
    UNASSIGNED: Operable triple-negative breast cancer (TNBC) is an unfavorable subtype of breast cancer, which usually requires an aggressive perioperative systemic treatment. When TNBC presents as a second primary cancer after cured acute leukemia, its management might be challenging.
    UNASSIGNED: We present a case report of a young postmenopausal woman with an operable TNBC who had a history of the B-cell acute lymphoblastic leukemia (B-ALL) and graft versus host disease (GVHD) after allogeneic stem cell transplantation (allo-SCT). A history of previous treatment with anthracyclines and radiotherapy and GVHD limited the use of doxorubicin for treatment of her TNBC. Due to the history of GVHD, perioperative treatment with pembrolizumab was omitted. Genetic testing was challenging due to the possible contamination of her tissues with the donor\'s cells after allo-SCT. In samples of our patient\'s buccal swab, peripheral blood, and tumor tissue, a pathogenic variant in the partner and localizer of BRCA2 (PALB2) gene was found. With neoadjuvant chemotherapy which included carboplatin, a pathologic complete response was achieved. Although our patient has a low risk for recurrence of TNBC, her risk for the development of new primary cancers remains substantial.
    UNASSIGNED: This case highlights challenges in the systemic treatment, genetic testing, and follow-up of patients with operable TNBC and other solid cancers who have a history of acute leukemia.
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  • 文章类型: Case Reports
    再喂养综合征的特征是营养不良患者在营养补充期间发生的电解质失衡。低镁血症是一种潜在的并发症。我们展示了一个女性的独特案例,年轻的神经性厌食症成年患者,在住院患者重新喂养期间出现持续的低镁血症,但补充镁未解决。扩展的诊断评估包括遗传测试,该测试显示PKD1和SCNN1G基因中具有不确定意义的杂合变体以及SMARCAL1基因中的致病性变体。这些变体目前与已知的肾脏疾病无关。虽然在适当补充的情况下对持续性低镁血症进行广泛的检查并没有得出明确的诊断,该病例强调需要在再喂养过程中寻求替代病因和意外难熔电解质异常的治疗。
    Refeeding syndrome is characterized by electrolyte imbalances that occur during nutritional replenishment in malnourished patients. Hypomagnesemia is a potential complication.  We present a unique case of a female, young adult patient with anorexia nervosa who experienced persistent hypomagnesemia during inpatient refeeding that did not resolve with magnesium supplementation. Extended diagnostic evaluation included genetic testing that revealed heterozygous variants of uncertain significance in the PKD1 and SCNN1G genes as well as a pathogenic variant in the SMARCAL1 gene. These variants are not currently associated with a known renal disorder.  While the extensive work-up for persistent hypomagnesemia in the context of appropriate supplementation did not yield a definitive diagnosis, this case emphasizes the need to pursue alternative etiologies and treatments of unexpectedly refractory electrolyte abnormalities during the course of refeeding.
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  • 文章类型: Case Reports
    背景:Gardner综合征是一种罕见的以肠道息肉病为特征的遗传性癌症易感性疾病,多发性骨瘤,和软组织和硬组织肿瘤。大约30%-70%的加德纳综合征患者存在牙齿异常,可以在常规牙科检查中发现。然而,有时,由于高临床变异性和不完整的临床表现,诊断具有挑战性。在这里,我们报告了一个有各种牙齿和骨骼异常的家庭,在基于最先进的下一代测序技术的全面遗传分析的帮助下,确定的诊断。病例介绍:一名17岁的女性索引患者出现牙齿(龋齿,受影响,保留和定位在前面的牙齿)和不典型的骨骼异常,与Gardner综合征不相似。由于全景X射线鉴定出的非典型骨骼异常,她在11岁时首次被转诊到我们的遗传咨询部门。手术切除牙齿3.6,组织病理学报告显示Paget病样骨代谢紊乱,下颌骨的成骨细胞和破骨细胞活动混合。体格检查发现腰椎皮下小肿瘤。肿瘤的超声检查提高了软骨瘤病软组织传播的可能性。她的妹妹,14岁时年轻2岁,患有一些良性肿瘤(多发性外生骨,牙列切除术,表皮样囊肿)和阻生牙齿。他们的母亲也有骨骼症状。她的下牙没有发育,第9-10号肋骨融合,她抱怨间歇性的下颚疼痛.头颅CT扫描显示颅骨上的纤维发育不良。全外显子组测序在索引患者的DNA中的APC基因中鉴定出杂合致病性无义突变(c.4700C>G;p.Ser1567*)。靶向测序揭示了其他受影响的家庭成员(姐妹和母亲)的DNA中的相同变体。结论:早期诊断,基因决定的综合症非常重要,因为肠息肉有潜在的高度恶性转化。牙医应该熟悉这种疾病的典型颌面部特征,能够将患者转介给遗传咨询。牙齿异常通常先于肠息肉病,便于早期诊断。从而增加患者的生存机会。对于具有非典型表型体征的患者,可能需要进行遗传分析。
    Background: Gardner syndrome is a rare genetic cancer predisposition disorder characterized by intestinal polyposis, multiple osteomas, and soft and hard tissue tumors. Dental anomalies are present in approximately 30%-70% of patients with Gardner syndrome and can be discovered during routine dental examinations. However, sometimes the diagnosis is challenging due to the high clinical variability and incomplete clinical picture. Herein, we report a family with various dental and bone anomalies, in which the definitive diagnosis was established with the help of a comprehensive genetic analysis based on state-of-the-art next-generation sequencing technology. Case presentation: A 17-year-old female index patient presented with dental (caries, impacted, retained and anteriorly located teeth) and atypical bone anomalies not resembling Gardner syndrome. She was first referred to our Genetic Counselling Unit at the age of 11 due to an atypical bone abnormality identified by a panoramic X-ray. Tooth 3.6 was surgically removed and the histopathology report revealed a Paget\'s disease-like bone metabolic disorder with mixed osteoblastic and osteoclastic activity of the mandible. A small lumbar subcutaneous tumor was discovered by physical examination. Ultrasound examination of the tumor raised the possibility of a soft tissue propagation of chondromatosis. Her sister, 2 years younger at the age of 14, had some benign tumors (multiple exostoses, odontomas, epidermoid cysts) and impacted teeth. Their mother had also skeletal symptoms. Her lower teeth did not develop, the 9th-10th ribs were fused, and she complained of intermittent jaw pain. A cranial CT scan showed fibrous dysplasia on the cranial bones. Whole exome sequencing identified a heterozygous pathogenic nonsense mutation (c.4700C>G; p.Ser1567*) in the APC gene in the index patient\'s DNA. Targeted sequencing revealed the same variant in the DNA of the other affected family members (the sister and the mother). Conclusion: Early diagnosis of this rare, genetically determined syndrome is very important, because of the potentially high malignant transformation of intestinal polyps. Dentists should be familiar with the typical maxillofacial features of this disorder, to be able to refer patients to genetic counseling. Dental anomalies often precede the intestinal polyposis and facilitate the early diagnosis, thereby increasing the patients\' chances of survival. Genetic analysis may be necessary in patients with atypical phenotypic signs.
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  • 文章类型: Case Reports
    Tricho-肝肠综合征(THES),也被称为综合征性腹泻,是一种罕见的遗传性疾病,会导致顽固性腹泻,头发异常,面部畸形,和肝脏异常。在这里,我们报告了一名八个月大的男性因腹泻症状被转诊到我们医院的病例,呕吐,体重增加不足。这个孩子是在一次简单的怀孕后通过剖腹产出生的,无新生儿重症监护病房(NICU)入院史。自出生以来,患者一直在经历腹泻和体重增加不足,需要多次入院。经评估,基因检测证实了这些疾病的诊断。管理策略包括各种营养干预和支持性护理措施。目前,病人在儿科重症监护病房(PICU),接受全胃肠外营养(TPN)和持续支持治疗。这个案例强调了诊断和管理这些东西的复杂性,强调全面护理和密切监测患者病情的必要性。
    Tricho-hepato-enteric syndrome (THES), also known as syndromic diarrhea, is a rare genetic disorder that causes intractable diarrhea, hair anomalies, facial dysmorphism, and liver abnormalities. Herein, we report the case of an eight-month-old male who was referred to our hospital due to symptoms of diarrhea, vomiting, and insufficient weight gain. The child was born via cesarean section following an uncomplicated pregnancy, with no history of admission to the neonatal intensive care unit (NICU). Since birth, the patient has been experiencing diarrhea and inadequate weight gain, necessitating multiple hospital admissions. Upon evaluation, genetic testing confirmed the diagnosis of THES. The management strategy included a variety of nutritional interventions and supportive care measures. Currently, the patient is in the pediatric intensive care unit (PICU), receiving total parenteral nutrition (TPN) and continuous supportive care. This case underscores the complexity of diagnosing and managing THES, highlighting the need for comprehensive care and close monitoring of the patient\'s condition.
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  • 文章类型: Journal Article
    一名73岁的日本男子,有通过胰十二指肠切除术治疗的远端胆道癌病史,患有胰腺腺泡细胞癌(PACC),通过残余胰腺切除术和辅助化疗治疗。手术后13个月,出现多个肝转移,并开始FOLFOX化疗.基于PACC诊断和乳腺癌和卵巢癌的阳性家族史,进行了基因检测,发现了致病性种系BRCA2变异(c.8629G>T,p.Glu2877Ter)。开始奥拉帕尼治疗,转移反应良好(部分反应)。PACC是BRCA2相关的癌症,可能对PARP抑制剂反应良好。
    A 73-year-old Japanese man with a history of distal biliary cancer treated by pancreatoduodenectomy developed pancreatic acinar cell carcinoma (PACC) treated by remnant pancreatectomy and adjuvant chemotherapy. Thirteen months after surgery, multiple liver metastases developed and FOLFOX chemotherapy was initiated. Based on the PACC diagnosis and a positive family history for breast and ovarian cancer genetic testing was performed which revealed a pathogenic germline BRCA2 variant (c.8629G > T, p.Glu2877Ter). Olaparib therapy was initiated and the metastases responded well (partial response). PACC is a BRCA2-associated cancer which may respond well to PARP inhibitors.
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