Genetic Testing

基因检测
  • 文章类型: Journal Article
    背景:GATA1相关的血细胞减少症(GRC)的特征是血小板减少症和/或轻度至重度的贫血。造血干细胞移植(HSCT)是GRC患者的治愈治疗选择。我们在一名患有GATA1相关血细胞减少症的男孩中发现了一种新的致病变体(GATA1:c.1019delG)。然后,我们在这个GRC家族中进行了植入前基因检测(PGT)。镶嵌胚胎移植后,分娩了与先证者健康且符合HLA的婴儿.
    方法:先证者是一名6岁男孩,自3岁起被诊断患有输血依赖性贫血。全外显子组测序(WES)表明,先证者在GATA1中具有半合子变体c.1019delG,该变体是从他的母亲那里继承的。他的父母决定接受PGT,以获得健康和HLA兼容的后代。在活检滋养外胚层(TE)细胞的全基因组扩增(WGA)后,基于下一代测序(NGS)的PGT被用来分析染色体非整倍体的胚胎,目标突变和HLA分型。有3个与先证者HLA匹配的胚胎。3个胚胎的基因型均为杂合变异,半合子变体,分别正常。在杂合之后,马赛克部分三体(chr)16,和HLA匹配的胚胎移植,分娩了一个健康的婴儿,其HSCT与先证者相符。
    结论:基于NGS的PGT-HLA是治疗由GATA1变体引起的GATA1相关的血细胞减少症的有价值的方法,或其他血液系统疾病,肿瘤和免疫疾病。此外,我们的研究再次证实,镶嵌胚胎移植将带来健康的后代。
    BACKGROUND: GATA1-related cytopenia (GRC) is characterized by thrombocytopaenia and/or anaemia ranging from mild to severe. Haematopoietic stem cell transplantation (HSCT) is a healing therapeutic choice for GRC patients. We identified a novel pathogenic variant (GATA1: c.1019delG) in a boy with GATA1-related cytopenia. Then we performed preimplantation genetic testing (PGT) in this GRC family. After a mosaic embryo transfered, a healthy and HLA-compatible with the proband baby was delivered.
    METHODS: The proband is a 6-year-old boy who was diagnosed to have transfusion-dependent anaemia since 3 year old. Whole-exome sequencing (WES) showed that the proband has a hemizygous variant c.1019delG in GATA1, which is inherited from his mother. His parents decided to undergo PGT to have a health and HLA-compatible offspring. After whole genome amplification (WGA) of biopsied trophectoderm (TE) cells, next generation sequencing (NGS)-based PGT was preformed to analyse embryos on chromosomal aneuploidy, target mutation and HLA typing. There were 3 embryos HLA-matched to the proband. The genotypes of the 3 embryos were heterozygous variant, hemizygous variant, normal respectively. After a heterozygous, mosaic partial trisomy (chr)16, and HLA-matched embryo transfer, a healthy baby was delivered and whose HSCT is compatible with the proband.
    CONCLUSIONS: NGS-based PGT-HLA is a valuable procedure for the treatment of GATA1-related cytopenia caused by GATA1 variants, or other haematological disorders, oncological and immunological diseases. Furthermore, our study reconfirms that mosaic embryos transfer would bring healthy offspring.
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  • 文章类型: Journal Article
    HbH病是与出生后生活相容的最严重的α-地中海贫血形式。复合杂合α0-地中海贫血-SEA缺失/α+-地中海贫血-3.7kb缺失是泰国HbH病的最常见原因。单基因疾病的植入前遗传学测试(PGT-M)是有疾病风险的夫妇开始健康婴儿怀孕的替代方法。本研究旨在使用多重荧光PCR开发HbH病-SEA/-3.7kb的PGT-M的新型PCR方案。开发并测试了一套新的α+地中海贫血-3.7kb缺失引物。将α0-地中海贫血-SEA缺失的PCR方案组合用于HbH病-SEA/-3.7kb基因分型。PCR方案应用于从具有不同地中海贫血基因型的受试者中提取的基因组DNA,以及来自HbBart风险家庭的临床PGT-M周期的全基因组扩增(WGA)产物。对结果进行了比较和讨论。结果表明,3个PCR产物来自α+地中海贫血-3.7kb引物组,和三个来自α0地中海贫血的引物组。结果与已知的地中海贫血基因型一致。还在来自临床PGT-M循环的37个WGA产品上测试了新型-α3.7引物方案,给出了准确的基因分型结果和令人满意的扩增效率,ADO率为2.7%,0%,对于HBA2、HBA1和内部对照片段,分别。这种新的PCR方案可以精确地将HbH疾病-SEA/-3.7kb与其他基因型区分开。此外,这是HbH病-SEA/-3.7kb的第一个PCR方案,对于PGT-M是最佳的
    Hb H disease is the most severe form of α-thalassemia compatible with post-natal life. Compound heterozygous α0-thalassemia- SEA deletion/α+-thalassemia- 3.7kb deletion is the commonest cause of Hb H disease in Thailand. Preimplantation genetics testing for monogenic disorders (PGT-M) is an alternative for couples at risk of the disorder to begin a pregnancy with a healthy baby. This study aims to develop a novel PCR protocol for PGT-M of Hb H disease- SEA/-3.7kb using multiplex fluorescent PCR. A novel set of primers for α+-thalassemia- 3.7kb deletion was developed and tested. The PCR protocol for α0-thalassemia- SEA deletion was combined for Hb H disease- SEA/-3.7kb genotyping. The PCR protocols were applied to genomic DNA extracted from subjects with different thalassemia genotypes and on whole genome amplification (WGA) products from clinical PGT-M cycles of the families at risk of Hb Bart\'s. The results were compared and discussed. The results showed three PCR products from α+-thalassemia- 3.7kb primer set, and three from α0thalassemiaSEA primer set. The results were consistent with the known thalassemia genotypes. The novel -α3.7 primers protocol was also tested on 37 WGA products from clinical PGT-M cycles giving accurate genotyping results and a satisfying amplification efficiency with the ADO rates of 2.7%, 0%, and 0% for HBA2, HBA1, and internal control fragments, respectively. This novel PCR protocol can precisely distinguish Hb H disease- SEA/-3.7kb from other genotypes. Additionally, this is the first PCR protocol for Hb H disease- SEA/-3.7kb which is optimal for PGT-M.
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  • 文章类型: Journal Article
    小儿心肌病主要归因于肌节相关基因的变异。不幸的是,约旦以前从未研究过小儿心肌病的遗传结构.我们试图通过Exome测序(ES)揭示来自约旦9个患有几种亚型小儿心肌病的家庭的14名患者的遗传前景。我们的调查确定了九个家庭中的七个(77.8%)的致病性和可能的致病性变异,肌节相关基因的聚类。令人惊讶的是,在糖原贮积障碍和线粒体相关疾病的先证者中,肌节相关肥厚型心肌病的表型明显。我们的研究强调了简化ES或扩展心肌病相关基因面板以鉴定肌节相关心肌病的合理表型的重要性。我们的发现还指出了对心肌病患者及其高危家庭成员进行基因检测的必要性。这可能会导致更好的管理策略,能够进行早期干预,并最终提高他们的预后。最后,我们的发现为约旦目前缺乏的关于心肌病分子基础的知识提供了初步贡献.
    Pediatric cardiomyopathies are mostly attributed to variants in sarcomere-related genes. Unfortunately, the genetic architecture of pediatric cardiomyopathies has never been previously studied in Jordan. We sought to uncover the genetic landscape of 14 patients from nine families with several subtypes of pediatric cardiomyopathies in Jordan using Exome sequencing (ES). Our investigation identified pathogenic and likely pathogenic variants in seven out of nine families (77.8%), clustering in sarcomere-related genes. Surprisingly, phenocopies of sarcomere-related hypertrophic cardiomyopathies were evident in probands with glycogen storage disorder and mitochondrial-related disease. Our study underscored the significance of streamlining ES or expanding cardiomyopathy-related gene panels to identify plausible phenocopies of sarcomere-related cardiomyopathies. Our findings also pointed out the need for genetic testing in patients with cardiomyopathy and their at-risk family members. This can potentially lead to better management strategies, enabling early interventions, and ultimately enhancing their prognosis. Finally, our findings provide an initial contribution to the currently absent knowledge about the molecular underpinnings of cardiomyopathies in Jordan.
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  • 文章类型: Journal Article
    先天性免疫错误(IEI)的分子诊断在确定患者的长期预后中起着至关重要的作用,治疗方案,和遗传咨询。在过去的十年里,下一代测序(NGS)技术在研究和临床环境中的广泛使用促进了对相当比例的患者进行与IEI相关的基因变异的评估.除了它在诊断已知基因缺陷中的作用,高通量技术的应用,如针对性的,exome,基因组测序导致了新的致病基因的鉴定。然而,从这些不同方法获得的结果可能因疾病表型或患者特征而异.在这项研究中,我们在相当大的IEI患者队列中进行了全外显子组测序(WES),由来自Türkiye21个不同临床免疫学中心的303名个体组成。我们的分析得出了41.1%的患者(297人中有122人)的可能遗传诊断,在6名患者中揭示52种新变异并发现潜在的新IEI基因。理解各种IEI队列结果的重要性不可低估,我们相信我们的发现将对现有文献做出有价值的贡献,并促进临床医生和基础科学研究人员之间的合作研究。
    Molecular diagnosis of inborn errors of immunity (IEI) plays a critical role in determining patients\' long-term prognosis, treatment options, and genetic counseling. Over the past decade, the broader utilization of next-generation sequencing (NGS) techniques in both research and clinical settings has facilitated the evaluation of a significant proportion of patients for gene variants associated with IEI. In addition to its role in diagnosing known gene defects, the application of high-throughput techniques such as targeted, exome, and genome sequencing has led to the identification of novel disease-causing genes. However, the results obtained from these different methods can vary depending on disease phenotypes or patient characteristics. In this study, we conducted whole-exome sequencing (WES) in a sizable cohort of IEI patients, consisting of 303 individuals from 21 different clinical immunology centers in Türkiye. Our analysis resulted in likely genetic diagnoses for 41.1% of the patients (122 out of 297), revealing 52 novel variants and uncovering potential new IEI genes in six patients. The significance of understanding outcomes across various IEI cohorts cannot be overstated, and we believe that our findings will make a valuable contribution to the existing literature and foster collaborative research between clinicians and basic science researchers.
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  • 文章类型: Journal Article
    由镶嵌变体产生的基因组镶嵌是描述具有与个体的种系细胞不同的基因组组成的细胞或细胞群体的存在的现象。它包括所有类型的遗传变异。很大一部分儿童遗传疾病被定义为从头,这意味着仅在先证者中检测到致病突变,不在任何父母。人口研究表明,80%的从头突变来自父系单倍型,也就是说,父系精子镶嵌症。本文就精子镶嵌的类型和检测策略作一综述。此外,它提供了关于最近的研究如何证明父母的基因组马赛克突变的讨论,尤其是父系精子中的那些,可能由后代遗传并导致儿童疾病。根据作者研究小组之前的发现,来自早期胚胎发生和原始生殖细胞阶段的精子镶嵌可以解释5%至20%的与临床表型相关的从头突变,并且可以作为罕见和复杂疾病的重要预测指标。精子镶嵌显示出临床遗传诊断和咨询的巨大潜力。根据已发表的文献,作者认为,在未来的研究中,应进行大规模的从头精子镶嵌突变筛查和基于人群的遗传筛查,这将大大增强后代的风险评估,并有效改善种群水平的遗传健康。实施从头突变的直接精子检测将显着提高患者队列分层的效率,并改善未来出生的复发风险评估。该领域的未来研究应集中在环境和生活方式因素对精子及其突变特征模型对后代健康的影响上。此外,精子突变的靶向体外建模也将是一个有希望的方向。
    Genomic mosaicism arising from mosaic variants is a phenomenon that describes the presence of a cell or cell populations with different genome compositions from the germline cells of an individual. It comprises all types of genetic variants. A large proportion of childhood genetic disorders are defined as being de novo, meaning that the disease-causing mutations are only detected in the proband, not in any of the parents. Population studies show that 80% of the de novo mutations arise from the paternal haplotype, that is, from paternal sperm mosaicism. This review provides a summary of the types and detection strategies of sperm mosaicism. In addition, it provides discussions on how recent studies demonstrated that genomic mosaic mutations in parents, especially those in the paternal sperms, could be inherited by the offspring and cause childhood disorders. According to the previous findings of the author\'s research team, sperm mosaicism derived from early embryogenesis and primordial germ cell stages can explain 5% to 20% of the de novo mutations related to clinical phenotypes and can serve as an important predictor of both rare and complex disorders. Sperm mosaicism shows great potential for clinical genetic diagnosis and consultations. Based on the published literature, the author suggests that, large-scale screening for de novo sperm mosaic mutations and population-based genetic screening should be conducted in future studies, which will greatly enhance the risk assessment in the offspring and effectively improve the genetic health at the population level. Implementation of direct sperm detection for de novo mutations will significantly increase the efficiency of the stratification of patient cohorts and improve recurrence risk assessment for future births. Future research in the field should be focused on the impact of environmental and lifestyle factors on the health of the offspring through sperms and their modeling of mutation signatures. In addition, targeted in vitro modeling of sperm mutations will also be a promising direction.
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  • 文章类型: Journal Article
    心血管疾病(CVDs)构成了重大的全球健康挑战,需要采取创新的初级预防方法。个性化预防,基于遗传风险评分(PRS)和数字技术,有望彻底改变CVD预防策略。然而,这些干预措施的临床疗效需要进一步研究.本研究提出了INNOPREV随机对照试验的方案,旨在评估PRS和数字技术在个性化心血管疾病预防中的临床疗效。
    INNOPREV试验是在意大利进行的四臂RCT。共有1,020人参加,根据SCORE2图表,年龄在40-69岁之间的10年心血管疾病风险较高,将被随机分配到传统的CVD风险评估中,基因检测(CVDPRS),数字干预(应用程序和智能乐队),或者基因检测和数字干预的结合。主要目标是评估提供CVDPRS信息的功效,在基线测量,单独或结合使用应用程序和智能乐队,在两个终点:生活方式的改变,和CVD风险概况的修改。参与者将在基线时进行全面评估和心血管评估,一次随访,五,和12个月。生活方式变化和心血管疾病风险状况将在初始评估之外的不同时间点进行评估。分别使用生活基本8和得分2。将在基线和研究完成时收集血液样品以评估脂质分布的变化。分析将采用调整后的混合效应模型进行重复测量,以评估随时间收集的数据的显着差异。此外,将检查潜在的主持人和调解员,以了解行为改变的潜在机制。
    作为这方面最大的试验,INNOPREV试验将有助于推进个性化心血管疾病预防,有可能对公共卫生产生积极影响,并减轻心血管疾病对医疗保健系统的负担。通过系统地检查PRS和数字干预的临床疗效,本试验旨在为指导未来的预防策略和提高人群健康结局提供有价值的证据.
    UNASSIGNED: Cardiovascular diseases (CVDs) pose a significant global health challenge, necessitating innovative approaches for primary prevention. Personalized prevention, based on genetic risk scores (PRS) and digital technologies, holds promise in revolutionizing CVD preventive strategies. However, the clinical efficacy of these interventions requires further investigation. This study presents the protocol of the INNOPREV randomized controlled trial, aiming to evaluate the clinical efficacy of PRS and digital technologies in personalized cardiovascular disease prevention.
    UNASSIGNED: The INNOPREV trial is a four-arm RCT conducted in Italy. A total of 1,020 participants, aged 40-69 with high 10-year CVD risk based on SCORE 2 charts, will be randomly assigned to traditional CVD risk assessment, genetic testing (CVD PRS), digital intervention (app and smart band), or a combination of genetic testing and digital intervention. The primary objective is to evaluate the efficacy of providing CVD PRS information, measured at baseline, either alone or in combination with the use of an app and a smart band, on two endpoints: changes in lifestyle patterns, and modification in CVD risk profiles. Participants will undergo a comprehensive assessment and cardiovascular evaluation at baseline, with follow-up visits at one, five, and 12 months. Lifestyle changes and CVD risk profiles will be assessed at different time points beyond the initial assessment, using the Life\'s Essential 8 and SCORE 2, respectively. Blood samples will be collected at baseline and at study completion to evaluate changes in lipid profiles. The analysis will employ adjusted mixed-effect models for repeated measures to assess significant differences in the data collected over time. Additionally, potential moderators and mediators will be examined to understand the underlying mechanisms of behavior change.
    UNASSIGNED: As the largest trial in this context, the INNOPREV trial will contribute to the advancement of personalized cardiovascular disease prevention, with the potential to positively impact public health and reduce the burden of CVDs on healthcare systems. By systematically examining the clinical efficacy of PRS and digital interventions, this trial aims to provide valuable evidence to guide future preventive strategies and enhance population health outcomes.
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  • 文章类型: Case Reports
    克罗恩病(CD)是一种影响消化道的炎症性肠病,其发病率在世界范围内呈上升趋势。血友病最常见的临床表现是继发于复发性关节积液和慢性滑膜炎的关节病。本文报道了一名罕见的25岁男性患者,患有血友病性关节病和克罗恩病,有致病性胃肠道出血的风险。在接受内镜病理检查和基因检测后,对治疗和营养计划进行了多学科专家整理.患者临床好转,坚持保守治疗。此病例报告是这种罕见的合并症的首次报告,展示高致病性突变位点,总结早期诊断和治疗的临床经验。
    Crohn\'s disease (CD) is an inflammatory bowel disease affecting the digestive tract, the incidence of which is on the rise worldwide. The most common clinical manifestation of hemophilia is arthropathy secondary to recurrent joint effusions and chronic synovitis. This article reports on a rare 25-year-old male patient with both hemophilic arthropathy and Crohn\'s disease who was at risk for pathogenic gastrointestinal bleeding. After undergoing endoscopic pathologic testing and genetic testing, a multidisciplinary expert work-up of a treatment and nutritional plan was performed. The patient improved clinically and adhered to conservative treatment. This case report is the first report of this rare co-morbidity, demonstrating the highly pathogenic mutation locus and summarizing the clinical experience of early diagnosis and treatment.
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  • 文章类型: Editorial
    暂无摘要。
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  • 文章类型: Journal Article
    目的:观察到强直性肌营养不良(MMD)患者在非日晒皮肤上有许多基底细胞癌(BCC)和异常增生性痣(DN)。同时,发表在《美国医学会杂志》(JAMA)上的一项大型研究表明,MMD患者“总体上”癌症发展的风险增加。基于这些发现,作者在2010年假设RNA结合蛋白(RBP)的失调,负责MMD的临床表现,也负责BCC和黑色素瘤的发展。
    方法:报道阐明黑色素瘤病因的新研究,密件抄送,MMD诱导的癌症,以及潜在的其他环境诱发的恶性肿瘤。
    结果:RBP的失调诱导异常mRNA剪接;最近的数据表明,异常mRNA剪接不仅在黑素瘤的发病机制中起关键作用,而且是基本上所有人类恶性肿瘤的标志。
    结论:作者的假设是紫外线(UV)辐射诱导多种基因内含子区域的DNA损伤。此外,这些紫外线诱导的异常DNA二聚体,重复和突变会干扰正常的mRNA剪接,从而产生异常蛋白质。这些异常的蛋白质反过来激活致癌途径,如刺猬,MAP激酶,和WNT。
    OBJECTIVE: Patients with myotonic muscular dystrophy (MMD) were observed to have numerous basal cell carcinoma (BCC) and abnormal dysplastic nevi (DN) on non-sun exposed skin. Simultaneously a large study published in the Journal of American Medical Association (JAMA) illustrated that patients with MMD have \"overall\" an increased risk for cancer development. Based on these findings, this author in 2010 postulated that dysregulation of RNA binding proteins (RBP), responsible for clinical manifestations of MMD, is also responsible for the development of BCC and melanoma.
    METHODS: To report new research elucidating the etiology of melanoma, BCC, MMD-induced cancers, and potentially other environmentally induced malignancies.
    RESULTS: Dysregulation of RBP induces aberrant mRNA splicing; recent data indicates that abnormal mRNA splicing not just plays a key role in the pathogenesis of melanoma but is a hallmark of essentially all human malignancies.
    CONCLUSIONS: The author\'s hypothesis is that ultraviolet (UV) radiation induces DNA damage in intronic regions of a variety of genes. Furthermore, these UV-induced abnormal DNA dimers, repeats and mutations interfere with normal mRNA splicing thus producing abnormal proteins. These abnormal proteins in turn activate oncogenic pathways such as hedgehog, MAP kinase, and WNT.
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  • 文章类型: Journal Article
    背景:遗传检测对于确定参与帕金森病(PD)患者的临床试验至关重要,这些患者携带葡萄糖脑苷脂酶(GBA)或富亮氨酸重复激酶2(LRRK2)基因变异体。受过神经遗传学或遗传咨询培训的专业人员的有限可用性是增加测试的主要障碍。远程医疗解决方案,以增加获得遗传学教育可以帮助解决有关顾问可用性的问题,并为患者和家庭成员提供选择。
    目标:作为预测试遗传咨询的替代方案,我们开发了一种基于网络的遗传学教育工具,该工具专注于PD的GBA和LRRK2测试,称为“帕金森病信息和教育遗传咨询交互式多媒体方法”(IMAGINE-PD),并进行了用户测试和可用性测试.目的是进行用户和可用性测试,以获得利益相关者的反馈,以改进IMAGINE-PD。
    方法:遗传咨询师和PD和神经遗传学主题专家为IMAGINE-PD开发了专门针对GBA和LRRK2基因检测的内容。根据美国卫生与人类服务部的研究,对11名运动障碍专家和13名PD患者进行了结构化访谈,以评估用户测试中IMAGINE-PD的内容,并对12名PD患者进行了访谈,以评估高保真原型的可用性。基于研究的网页设计和可用性指南。定性数据分析告知更改以创建IMAGINE-PD的最终版本。
    结果:由3名评估者审查了定性数据。主题是从运动障碍专家和PD患者在用户测试中的3个方面的反馈数据中确定的:内容,例如所涵盖的主题,网站导航等功能,以及图片和颜色等外观。同样,可用性测试反馈的定性分析确定了这3个领域的其他主题。考虑到评论的重要性和类似评论的频率,审稿人之间达成共识,确定了反馈的关键点。在用户测试和可用性测试阶段,根据评估人员在每个主题内的共识建议,对IMAGINE-PD进行了改进,以创建IMAGINE-PD的最终版本。
    结论:内容审查和可用性测试的用户测试已对IMAGINE-PD进行了改进,GBA和LRRK2测试的遗传学教育工具。正在将这种由利益相关者知情的干预措施与标准的远程遗传咨询方法进行比较。
    BACKGROUND: Genetic testing is essential to identify research participants for clinical trials enrolling people with Parkinson disease (PD) carrying a variant in the glucocerebrosidase (GBA) or leucine-rich repeat kinase 2 (LRRK2) genes. The limited availability of professionals trained in neurogenetics or genetic counseling is a major barrier to increased testing. Telehealth solutions to increase access to genetics education can help address issues around counselor availability and offer options to patients and family members.
    OBJECTIVE: As an alternative to pretest genetic counseling, we developed a web-based genetics education tool focused on GBA and LRRK2 testing for PD called the Interactive Multimedia Approach to Genetic Counseling to Inform and Educate in Parkinson\'s Disease (IMAGINE-PD) and conducted user testing and usability testing. The objective was to conduct user and usability testing to obtain stakeholder feedback to improve IMAGINE-PD.
    METHODS: Genetic counselors and PD and neurogenetics subject matter experts developed content for IMAGINE-PD specifically focused on GBA and LRRK2 genetic testing. Structured interviews were conducted with 11 movement disorder specialists and 13 patients with PD to evaluate the content of IMAGINE-PD in user testing and with 12 patients with PD to evaluate the usability of a high-fidelity prototype according to the US Department of Health and Human Services Research-Based Web Design & Usability Guidelines. Qualitative data analysis informed changes to create a final version of IMAGINE-PD.
    RESULTS: Qualitative data were reviewed by 3 evaluators. Themes were identified from feedback data of movement disorder specialists and patients with PD in user testing in 3 areas: content such as the topics covered, function such as website navigation, and appearance such as pictures and colors. Similarly, qualitative analysis of usability testing feedback identified additional themes in these 3 areas. Key points of feedback were determined by consensus among reviewers considering the importance of the comment and the frequency of similar comments. Refinements were made to IMAGINE-PD based on consensus recommendations by evaluators within each theme at both user testing and usability testing phases to create a final version of IMAGINE-PD.
    CONCLUSIONS: User testing for content review and usability testing have informed refinements to IMAGINE-PD to develop this focused, genetics education tool for GBA and LRRK2 testing. Comparison of this stakeholder-informed intervention to standard telegenetic counseling approaches is ongoing.
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