Genetic Testing

基因检测
  • 文章类型: Journal Article
    遗传检查在神经系统疾病的临床评估中变得越来越普遍。我们评估了中老年神经系统患者的产量,在现实世界的背景下。这项回顾性研究包括368名50岁及以上的以色列患者(男性202人[54.9%]),他们在2017年至2023年中期期间被转诊到一家神经遗传学诊所。所有人都有神经系统疾病,没有先前的分子诊断。人口统计,从医疗记录中收集临床和遗传数据.在诊所进行首次遗传咨询的平均年龄为62.3±7.8岁(范围为50-85岁),转诊的主要适应症是神经肌肉,运动和脑血管疾病,以及认知障碍和痴呆症。368名患者中,245(66.6%)接受了基因检测,包括外显子组测序(ES),核苷酸重复扩增分析,检测特定的突变,靶向基因组测序或染色体微阵列分析。总的来说,80名患者(21.7%)因36种疾病接受了分子诊断,占进行基因检测的患者的32.7%。诊断率最高的是神经肌肉(58/186患者[31.2%],148名受测者中的39.2%)和运动障碍(14/79[17.7%]患者,48个测试中的29.2%),但对其他疾病来说更低。核苷酸重复扩增和ES的测试为28/73(38.4%)和19/132(14.4%)个体提供了诊断,分别。根据我们的发现,遗传检查和测试在50岁以上的神经系统患者的诊断过程中很有用,特别是对于那些有神经肌肉和运动障碍的人。
    Genetic workup is becoming increasingly common in the clinical assessment of neurological disorders. We evaluated its yield among middle-aged and elderly neurological patients, in a real-world context. This retrospective study included 368 consecutive Israeli patients aged 50 years and older (202 [54.9%] males), who were referred to a single neurogenetics clinic between 2017 and mid-2023. All had neurological disorders, without a previous molecular diagnosis. Demographic, clinical and genetic data were collected from medical records. The mean age at first genetic counseling at the clinic was 62.3 ± 7.8 years (range 50-85 years), and the main indications for referral were neuromuscular, movement and cerebrovascular disorders, as well as cognitive impairment and dementia. Out of the 368 patients, 245 (66.6%) underwent genetic testing that included exome sequencing (ES), analysis of nucleotide repeat expansions, detection of specific mutations, targeted gene panel sequencing or chromosomal microarray analysis. Overall, 80 patients (21.7%) received a molecular diagnosis due to 36 conditions, accounting for 32.7% of the patients who performed genetic testing. The diagnostic rates were highest for neuromuscular (58/186 patients [31.2%] in this group, 39.2% of 148 tested individuals) and movement disorders (14/79 [17.7%] patients, 29.2% of 48 tested), but lower for other disorders. Testing of nucleotide repeat expansions and ES provided a diagnosis to 28/73 (38.4%) and 19/132 (14.4%) individuals, respectively. Based on our findings, genetic workup and testing are useful in the diagnostic process of neurological patients aged ≥50 years, in particular for those with neuromuscular and movement disorders.
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  • 文章类型: Case Reports
    背景:Nephronophisis(NPHP)是一种常染色体隐性遗传疾病,有一部分患者表现为肾外表现,如视网膜变性,小脑共济失调,肝纤维化,骨骼异常,心脏畸形,和肺支气管扩张.然而,其他器官系统的参与也有记录。肾外表现发生在大约10-20%的患者中。在发达国家,据报道,在生命的前三十年中,它是单基因慢性肾衰竭(CKF)的最常见原因之一,有超过25个基因与这种情况有关。目前管理NPHP的治疗方案包括支持治疗,并发症的管理,必要时进行肾脏替代疗法。索引患者是一名10岁的白人女性,她反复发作腹痛。她的姐姐,TN,17岁,被诊断为CKF,并注意到肝酶持续升高(γ-谷氨酰转移酶,丙氨酸,和天冬氨酸转氨酶)。基因检测后,她的姐姐被证明患有3型Nephronophisis,肝活检显示早期纤维化变化。随后的基因检测证实该指标患者患有NPHP3型。肾脏活检显示局灶性硬化的肾小球,伴有肾小管萎缩的斑片状区域和相关的肾小管间质变化,与NPHP保持一致。我们介绍了第一例来自南非的NPHP的确诊病例,该病例基于组织病理学和基因检测,在一名10岁的白人女性中表现出反复发作的腹痛,他的姐姐也出现了CKF和早期肝纤维化,活检和基因检测证实。
    结论:在中低收入国家,应尽可能进行基因检测以确认NPHP的诊断,尤其是那些提示活检或病因不明的CKF伴或不伴肾外表现的患者。
    BACKGROUND: Nephronophthisis (NPHP) is an autosomal recessive disorder with a subset of patients presenting with extrarenal manifestations such as retinal degeneration, cerebella ataxia, liver fibrosis, skeletal abnormalities, cardiac malformations, and lung bronchiectasis. However, the involvement of other organ systems has also been documented. Extrarenal manifestations occur in approximately 10-20% of patients. In developed countries, it has been reported as one of the most common causes of monogenic chronic kidney failure (CKF) during the first three decades of life, with more than 25 genes associated with this condition. The current treatment options for managing NPHP include supportive care, management of complications, and kidney replacement therapy when necessary. The index patient is a 10-year-old Caucasian female who presented with recurrent attacks of abdominal pain. Her elder sister, TN, who was 17 years old, was diagnosed with CKF and noted to have persistently elevated liver enzymes (gamma-glutamyl transferase, alanine, and aspartate transaminases). Following genetic testing, her elder sister was shown to have Nephronophthisis Type 3, and a liver biopsy showed early fibrotic changes. Subsequent genetic testing confirmed the index patient as having NPHP Type 3. A kidney biopsy showed focal sclerosed glomeruli with patchy areas of tubular atrophy and related tubulointerstitial changes in keeping with NPHP. We present the first confirmatory case of NPHP from South Africa based on histopathology and genetic testing in a 10-year-old Caucasian female who presented with recurrent attacks of abdominal pain, whose elder sister also presented with CKF and early liver fibrosis, confirmed on biopsy and genetic testing.
    CONCLUSIONS: In low-middle-income countries, genetic testing should be undertaken whenever possible to confirm the diagnosis of NPHP, especially in those with a suggestive biopsy or if there is CKF of unknown aetiology with or without extra-renal manifestations.
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  • 文章类型: Journal Article
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  • 文章类型: English Abstract
    Objective: To explore the genotype-phenotype relationship of Wilson\'s disease (WD) and further study the mutation spectrum in the ATP7B gene. Methods: The clinical data and genetic test results of 115 cases with WD diagnosed in the First Affiliated Hospital of Zhengzhou University from 2015 to 2022 were retrospectively analyzed. The rank sum test was used for quantitative data comparison, and χ(2) test was used for count data comparison. Multivariate logistic regression was used to analyze the relationship between patients\' genotype and phenotype. Results: The onset of liver manifestations (hepatic type) accounted for 60.9%, neurological symptoms (cerebral type) for 13.0%, and mixed hepato-cerebral symptoms for 26.1%. Presymptomatic individuals (hepatic types) accounted for 62.9%. Next-generation sequencing- diagnosed WD cases accounted for 87.8%. Combined multiplex ligation-dependent probe amplification assay-diagnosed WD cases accounted for 89.6%. A single case with a detected pathogenic locus accounted for 10.4%. The diagnostic rate of WD by genetic testing combined with clinical data was 100%. A total of 76 ATP7B mutations were detected, and the top three mutation frequencies were c.2333G>T (p.Arg778Leu) (30.7%), c.2975C>T (p.Pro992Leu) (7.3%), and c.2621C>T (p.Ala874Val) (6.4%). The mutations were mainly distributed in exons 8, 11-13, and 15-18, accounting for more than 90% of the total mutations. Eight new mutations were found, including c.3724G>A (p.Glu1242Lys), c.3703G>C (p.Gly1235Arg), c.3593T>C (p.Val1198Ala), c.2494A>C (p.Lys832Gln), c.1517T>A (p.Ile506Lys), c.484G>T (p.Glu162Ter), c.1870-49A>G, and the missing of exons 10-21. Liver histopathology showed cellular edema, degeneration, inflammation, and necrosis, as well as a 42.8% copper staining positive rate. Genotype-phenotype analysis showed that the p.Arg778Leu mutation had higher alanine aminotransferase (ALT) levels than those carrying other mutations (P=0.024), while the homozygous mutation of p.Arg778Leu was associated with cerebral-type patients (P=0.027). Conclusion: Genetic testing plays an important role in the diagnosis of WD. p.Arg778Leu is the first high-frequency mutation in the Chinese population, and patients carrying it have higher ALT levels. The p.Arg778Leu homozygous mutation is prone to causing cerebral-type WD. This study expands the ATP7B gene mutation spectrum.
    目的: 探讨肝豆状核变性(WD)的基因型-表型关系,研究ATP7B基因突变谱。 方法: 回顾性分析2015年至2022年在郑州大学第一附属医院确诊的115例WD患者的临床资料和基因检测结果。计量资料比较采用秩和检验,计数资料比较采用χ(2)检验;采用多因素logisitc回归法分析患者基因型和表型的相关性。 结果: 以肝脏表现起病的(肝型)占60.9%,神经系统症状起病的(脑型)占13.0%,肝脑混合型占26.1%。症状前个体占肝型的62.9%。二代测序诊断WD的占87.8%,联合多重连接探针扩增技术诊断WD的占89.6%,仅检测到1个致病位点的占10.4%。基因检测结合临床资料对WD的诊断率为100%。共检出ATP7B变异76种,突变频率最高前3位的为c.2333G>T(p.Arg778Leu,30.7%)、c.2975C>T(p.Pro992Leu,7.3%)和c.2621C>T(p.Ala874Val,6.4%)。变异主要分布在第8、11~13和15~18号外显子,占变异总数的90%以上。发现新变异8个,分别为c.3724G > A(p.Glu1242Lys)、c.3703G > C(p.Gly1235Arg)、c.3593T > C(p.Val1198Ala)、c.2494A > C(p.Lys832Gln)、c.1517T > A(p.Ile506Lys)、c.484G > T(p.Glu162Ter)、c.1870-49A > G和第10~21号外显子缺失。肝组织病理学示细胞水肿变性、炎性和坏死,铜染色阳性率仅为42.8%。基因型-表型分析显示,携带p.Arg778Leu变异者比携带其他变异者的丙氨酸转氨酶(ALT)水平更高(P = 0.024),p.Arg778Leu纯合变异和脑型患者相关(P = 0.027)。 结论: 基因检测在WD确诊中发挥重要作用。p.Arg778Leu为中国人群第1高频变异,携带该变异的患者ALT水平较高;p.Arg778Leu纯合变异易导致脑型WD。该研究扩展了ATP7B基因变异谱。.
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  • 文章类型: Journal Article
    目的:先天性高胰岛素血症(CHI)是一种罕见的,以胰岛素分泌过多为特征的单基因疾病。我们旨在评估过去二十年来在挪威注册的所有可疑CHI的先证者。
    方法:本研究包括98名先证者。从医疗记录中累积临床数据。筛选所有先证者的基因ABCC8和KCNJ11中的变体。其他CHI相关基因如患者表型所示进行Sanger测序(N=75),或使用一组30个CHI相关基因(N=23)通过下一代测序进行分析。
    结果:21名先证者(21%)接受了CHI以外的诊断,最常见的是特发性酮症性低血糖(9%)或综合征性高胰岛素血症(4%).在77名CHI先证者的最后一组中,46例(60%)中发现了遗传发现.ABCC8变体是最常见的(N=40),并且鉴定了五个新的变体。一个先证者同时具有致病性GCK变体p。(Ala456Val)和ABCC8变体p。(Gly505Cys)。尽管大多数ABCC8变异体可导致疾病立即发作并伴有严重的低血糖,并且对二氮嗪无反应,八个先证者有一个杂合子,表型较温和的明显显性变异。两个先证者在GLUD1中有致病变异,而在HADH中有变异,HNF4A,KCNJ11和HK1分别在一个先证中确定,后者是非编码的。在53%的CHI先证者中报告了神经系统后遗症。非手术治疗的先证者,43%有自发决议。挪威CHI的最低出生患病率为1:19,400例活产。
    结论:患有致病ABCC8变异的个体在我们的队列中占主导地位。与遗传未解决的患者相比,具有已知遗传病因的患者发病更早,更严重。
    OBJECTIVE: Congenital hyperinsulinism (CHI) is a rare, monogenic disease characterized by excessive insulin secretion. We aimed to evaluate all probands with suspected CHI in Norway registered over the past two decades.
    METHODS: The study included 98 probands. Clinical data were cumulated from medical records. All probands were screened for variants in the genes ABCC8 and KCNJ11. Other CHI-related genes were Sanger-sequenced as indicated by the patients\' phenotype (N=75) or analyzed by next-generation sequencing employing a panel of 30 CHI-related genes (N=23).
    RESULTS: Twenty-one probands (21%) received a diagnosis other than CHI, the most common being idiopathic ketotic hypoglycemia (9%) or syndromic hyperinsulinism (4%). In the final cohort of 77 CHI probands, genetic findings were revealed in 46 (60%). ABCC8 variants were most common (N=40) and five novel variants were identified. One proband harbored both the pathogenic GCK variant p.(Ala456Val) and the ABCC8 variant p.(Gly505Cys). Although most ABCC8 variants caused immediate disease onset with severe hypoglycemia and were diazoxide-unresponsive, eight probands had a heterozygous, apparently dominant variant with milder phenotype. Two probands had pathogenic variants in GLUD1, whereas variants in HADH, HNF4A, KCNJ11, and HK1 were identified in one proband each, the latter being non-coding. Neurologic sequelae were reported in 53% of the CHI probands. Of non-surgically treated probands, 43% had spontaneous resolution. The minimum birth prevalence of CHI in Norway is 1:19,400 live births.
    CONCLUSIONS: Individuals with disease-causing ABCC8 variants dominated our cohort. Patients with known genetic etiology had earlier and more severe disease-onset than genetically unsolved patients.
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  • 文章类型: Journal Article
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  • 文章类型: Journal Article
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  • 文章类型: Journal Article
    背景:GATA1相关的血细胞减少症(GRC)的特征是血小板减少症和/或轻度至重度的贫血。造血干细胞移植(HSCT)是GRC患者的治愈治疗选择。我们在一名患有GATA1相关血细胞减少症的男孩中发现了一种新的致病变体(GATA1:c.1019delG)。然后,我们在这个GRC家族中进行了植入前基因检测(PGT)。镶嵌胚胎移植后,分娩了与先证者健康且符合HLA的婴儿.
    方法:先证者是一名6岁男孩,自3岁起被诊断患有输血依赖性贫血。全外显子组测序(WES)表明,先证者在GATA1中具有半合子变体c.1019delG,该变体是从他的母亲那里继承的。他的父母决定接受PGT,以获得健康和HLA兼容的后代。在活检滋养外胚层(TE)细胞的全基因组扩增(WGA)后,基于下一代测序(NGS)的PGT被用来分析染色体非整倍体的胚胎,目标突变和HLA分型。有3个与先证者HLA匹配的胚胎。3个胚胎的基因型均为杂合变异,半合子变体,分别正常。在杂合之后,马赛克部分三体(chr)16,和HLA匹配的胚胎移植,分娩了一个健康的婴儿,其HSCT与先证者相符。
    结论:基于NGS的PGT-HLA是治疗由GATA1变体引起的GATA1相关的血细胞减少症的有价值的方法,或其他血液系统疾病,肿瘤和免疫疾病。此外,我们的研究再次证实,镶嵌胚胎移植将带来健康的后代。
    BACKGROUND: GATA1-related cytopenia (GRC) is characterized by thrombocytopaenia and/or anaemia ranging from mild to severe. Haematopoietic stem cell transplantation (HSCT) is a healing therapeutic choice for GRC patients. We identified a novel pathogenic variant (GATA1: c.1019delG) in a boy with GATA1-related cytopenia. Then we performed preimplantation genetic testing (PGT) in this GRC family. After a mosaic embryo transfered, a healthy and HLA-compatible with the proband baby was delivered.
    METHODS: The proband is a 6-year-old boy who was diagnosed to have transfusion-dependent anaemia since 3 year old. Whole-exome sequencing (WES) showed that the proband has a hemizygous variant c.1019delG in GATA1, which is inherited from his mother. His parents decided to undergo PGT to have a health and HLA-compatible offspring. After whole genome amplification (WGA) of biopsied trophectoderm (TE) cells, next generation sequencing (NGS)-based PGT was preformed to analyse embryos on chromosomal aneuploidy, target mutation and HLA typing. There were 3 embryos HLA-matched to the proband. The genotypes of the 3 embryos were heterozygous variant, hemizygous variant, normal respectively. After a heterozygous, mosaic partial trisomy (chr)16, and HLA-matched embryo transfer, a healthy baby was delivered and whose HSCT is compatible with the proband.
    CONCLUSIONS: NGS-based PGT-HLA is a valuable procedure for the treatment of GATA1-related cytopenia caused by GATA1 variants, or other haematological disorders, oncological and immunological diseases. Furthermore, our study reconfirms that mosaic embryos transfer would bring healthy offspring.
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  • 文章类型: Journal Article
    HbH病是与出生后生活相容的最严重的α-地中海贫血形式。复合杂合α0-地中海贫血-SEA缺失/α+-地中海贫血-3.7kb缺失是泰国HbH病的最常见原因。单基因疾病的植入前遗传学测试(PGT-M)是有疾病风险的夫妇开始健康婴儿怀孕的替代方法。本研究旨在使用多重荧光PCR开发HbH病-SEA/-3.7kb的PGT-M的新型PCR方案。开发并测试了一套新的α+地中海贫血-3.7kb缺失引物。将α0-地中海贫血-SEA缺失的PCR方案组合用于HbH病-SEA/-3.7kb基因分型。PCR方案应用于从具有不同地中海贫血基因型的受试者中提取的基因组DNA,以及来自HbBart风险家庭的临床PGT-M周期的全基因组扩增(WGA)产物。对结果进行了比较和讨论。结果表明,3个PCR产物来自α+地中海贫血-3.7kb引物组,和三个来自α0地中海贫血的引物组。结果与已知的地中海贫血基因型一致。还在来自临床PGT-M循环的37个WGA产品上测试了新型-α3.7引物方案,给出了准确的基因分型结果和令人满意的扩增效率,ADO率为2.7%,0%,对于HBA2、HBA1和内部对照片段,分别。这种新的PCR方案可以精确地将HbH疾病-SEA/-3.7kb与其他基因型区分开。此外,这是HbH病-SEA/-3.7kb的第一个PCR方案,对于PGT-M是最佳的
    Hb H disease is the most severe form of α-thalassemia compatible with post-natal life. Compound heterozygous α0-thalassemia- SEA deletion/α+-thalassemia- 3.7kb deletion is the commonest cause of Hb H disease in Thailand. Preimplantation genetics testing for monogenic disorders (PGT-M) is an alternative for couples at risk of the disorder to begin a pregnancy with a healthy baby. This study aims to develop a novel PCR protocol for PGT-M of Hb H disease- SEA/-3.7kb using multiplex fluorescent PCR. A novel set of primers for α+-thalassemia- 3.7kb deletion was developed and tested. The PCR protocol for α0-thalassemia- SEA deletion was combined for Hb H disease- SEA/-3.7kb genotyping. The PCR protocols were applied to genomic DNA extracted from subjects with different thalassemia genotypes and on whole genome amplification (WGA) products from clinical PGT-M cycles of the families at risk of Hb Bart\'s. The results were compared and discussed. The results showed three PCR products from α+-thalassemia- 3.7kb primer set, and three from α0thalassemiaSEA primer set. The results were consistent with the known thalassemia genotypes. The novel -α3.7 primers protocol was also tested on 37 WGA products from clinical PGT-M cycles giving accurate genotyping results and a satisfying amplification efficiency with the ADO rates of 2.7%, 0%, and 0% for HBA2, HBA1, and internal control fragments, respectively. This novel PCR protocol can precisely distinguish Hb H disease- SEA/-3.7kb from other genotypes. Additionally, this is the first PCR protocol for Hb H disease- SEA/-3.7kb which is optimal for PGT-M.
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  • 文章类型: Journal Article
    小儿心肌病主要归因于肌节相关基因的变异。不幸的是,约旦以前从未研究过小儿心肌病的遗传结构.我们试图通过Exome测序(ES)揭示来自约旦9个患有几种亚型小儿心肌病的家庭的14名患者的遗传前景。我们的调查确定了九个家庭中的七个(77.8%)的致病性和可能的致病性变异,肌节相关基因的聚类。令人惊讶的是,在糖原贮积障碍和线粒体相关疾病的先证者中,肌节相关肥厚型心肌病的表型明显。我们的研究强调了简化ES或扩展心肌病相关基因面板以鉴定肌节相关心肌病的合理表型的重要性。我们的发现还指出了对心肌病患者及其高危家庭成员进行基因检测的必要性。这可能会导致更好的管理策略,能够进行早期干预,并最终提高他们的预后。最后,我们的发现为约旦目前缺乏的关于心肌病分子基础的知识提供了初步贡献.
    Pediatric cardiomyopathies are mostly attributed to variants in sarcomere-related genes. Unfortunately, the genetic architecture of pediatric cardiomyopathies has never been previously studied in Jordan. We sought to uncover the genetic landscape of 14 patients from nine families with several subtypes of pediatric cardiomyopathies in Jordan using Exome sequencing (ES). Our investigation identified pathogenic and likely pathogenic variants in seven out of nine families (77.8%), clustering in sarcomere-related genes. Surprisingly, phenocopies of sarcomere-related hypertrophic cardiomyopathies were evident in probands with glycogen storage disorder and mitochondrial-related disease. Our study underscored the significance of streamlining ES or expanding cardiomyopathy-related gene panels to identify plausible phenocopies of sarcomere-related cardiomyopathies. Our findings also pointed out the need for genetic testing in patients with cardiomyopathy and their at-risk family members. This can potentially lead to better management strategies, enabling early interventions, and ultimately enhancing their prognosis. Finally, our findings provide an initial contribution to the currently absent knowledge about the molecular underpinnings of cardiomyopathies in Jordan.
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