Genetic Testing

基因检测
  • 文章类型: Journal Article
    小儿心肌病主要归因于肌节相关基因的变异。不幸的是,约旦以前从未研究过小儿心肌病的遗传结构.我们试图通过Exome测序(ES)揭示来自约旦9个患有几种亚型小儿心肌病的家庭的14名患者的遗传前景。我们的调查确定了九个家庭中的七个(77.8%)的致病性和可能的致病性变异,肌节相关基因的聚类。令人惊讶的是,在糖原贮积障碍和线粒体相关疾病的先证者中,肌节相关肥厚型心肌病的表型明显。我们的研究强调了简化ES或扩展心肌病相关基因面板以鉴定肌节相关心肌病的合理表型的重要性。我们的发现还指出了对心肌病患者及其高危家庭成员进行基因检测的必要性。这可能会导致更好的管理策略,能够进行早期干预,并最终提高他们的预后。最后,我们的发现为约旦目前缺乏的关于心肌病分子基础的知识提供了初步贡献.
    Pediatric cardiomyopathies are mostly attributed to variants in sarcomere-related genes. Unfortunately, the genetic architecture of pediatric cardiomyopathies has never been previously studied in Jordan. We sought to uncover the genetic landscape of 14 patients from nine families with several subtypes of pediatric cardiomyopathies in Jordan using Exome sequencing (ES). Our investigation identified pathogenic and likely pathogenic variants in seven out of nine families (77.8%), clustering in sarcomere-related genes. Surprisingly, phenocopies of sarcomere-related hypertrophic cardiomyopathies were evident in probands with glycogen storage disorder and mitochondrial-related disease. Our study underscored the significance of streamlining ES or expanding cardiomyopathy-related gene panels to identify plausible phenocopies of sarcomere-related cardiomyopathies. Our findings also pointed out the need for genetic testing in patients with cardiomyopathy and their at-risk family members. This can potentially lead to better management strategies, enabling early interventions, and ultimately enhancing their prognosis. Finally, our findings provide an initial contribution to the currently absent knowledge about the molecular underpinnings of cardiomyopathies in Jordan.
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  • 文章类型: Journal Article
    先天性免疫错误(IEI)的分子诊断在确定患者的长期预后中起着至关重要的作用,治疗方案,和遗传咨询。在过去的十年里,下一代测序(NGS)技术在研究和临床环境中的广泛使用促进了对相当比例的患者进行与IEI相关的基因变异的评估.除了它在诊断已知基因缺陷中的作用,高通量技术的应用,如针对性的,exome,基因组测序导致了新的致病基因的鉴定。然而,从这些不同方法获得的结果可能因疾病表型或患者特征而异.在这项研究中,我们在相当大的IEI患者队列中进行了全外显子组测序(WES),由来自Türkiye21个不同临床免疫学中心的303名个体组成。我们的分析得出了41.1%的患者(297人中有122人)的可能遗传诊断,在6名患者中揭示52种新变异并发现潜在的新IEI基因。理解各种IEI队列结果的重要性不可低估,我们相信我们的发现将对现有文献做出有价值的贡献,并促进临床医生和基础科学研究人员之间的合作研究。
    Molecular diagnosis of inborn errors of immunity (IEI) plays a critical role in determining patients\' long-term prognosis, treatment options, and genetic counseling. Over the past decade, the broader utilization of next-generation sequencing (NGS) techniques in both research and clinical settings has facilitated the evaluation of a significant proportion of patients for gene variants associated with IEI. In addition to its role in diagnosing known gene defects, the application of high-throughput techniques such as targeted, exome, and genome sequencing has led to the identification of novel disease-causing genes. However, the results obtained from these different methods can vary depending on disease phenotypes or patient characteristics. In this study, we conducted whole-exome sequencing (WES) in a sizable cohort of IEI patients, consisting of 303 individuals from 21 different clinical immunology centers in Türkiye. Our analysis resulted in likely genetic diagnoses for 41.1% of the patients (122 out of 297), revealing 52 novel variants and uncovering potential new IEI genes in six patients. The significance of understanding outcomes across various IEI cohorts cannot be overstated, and we believe that our findings will make a valuable contribution to the existing literature and foster collaborative research between clinicians and basic science researchers.
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  • 文章类型: Journal Article
    Brugada综合征是一种遗传性心律失常,SCN5A中的功能丧失变体。解释SCN5A错义变体的致病性具有挑战性,在ClinVar中,约79%的SCN5A错义变异目前被归类为不确定意义的变异。自动化膜片钳技术可以实现离子通道变异体的高通量功能研究,并可以为变异体重新分类提供证据。
    产生了体外SCN5A-Brugada综合征自动膜片钳测定,并在范德比尔特大学医学中心和VictorChang心脏研究所进行了独立研究。根据ClinGen序列变体解释建议使用高置信度变体对照(n=49)校准测定。根据良性变异分析结果的分布,建立功能的正常和异常范围。根据ClinGen序列变体解释建议,从实验结果得出致病性值的可能性。然后使用校准的测定来研究在患有Brugada综合征的4个家庭中观察到的具有不确定显著性的SCN5A变体和与SCN5A功能丧失相关的其他心律失常表型。
    在两个研究地点独立生成的变体通道参数显示出强相关性,包括峰值INa密度(R2=0.86)。该测定准确区分良性对照(24/25一致变体)与致病性对照(23/24一致变体)。正常功能的致病性值的几率为0.042,异常功能的几率为24.0,与美国医学遗传学和基因组学学院/分子病理学良性和致病功能标准(分别为BS3和PS3)的有力证据相对应。对4种意义不确定的临床SCN5A变体的测定应用揭示了3/4变体的功能丧失,能够重新分类到可能的致病性。
    这种经过验证的高通量检测方法提供了临床级功能证据,有助于对当前和未来意义不确定的SCN5A-Brugada综合征变异进行分类。
    UNASSIGNED: Brugada syndrome is an inheritable arrhythmia condition that is associated with rare, loss-of-function variants in SCN5A. Interpreting the pathogenicity of SCN5A missense variants is challenging, and ≈79% of SCN5A missense variants in ClinVar are currently classified as variants of uncertain significance. Automated patch clamp technology enables high-throughput functional studies of ion channel variants and can provide evidence for variant reclassification.
    UNASSIGNED: An in vitro SCN5A-Brugada syndrome automated patch clamp assay was generated and independently studied at Vanderbilt University Medical Center and Victor Chang Cardiac Research Institute. The assay was calibrated according to ClinGen Sequence Variant Interpretation recommendations using high-confidence variant controls (n=49). Normal and abnormal ranges of function were established based on the distribution of benign variant assay results. Odds of pathogenicity values were derived from the experimental results according to ClinGen Sequence Variant Interpretation recommendations. The calibrated assay was then used to study SCN5A variants of uncertain significance observed in 4 families with Brugada syndrome and other arrhythmia phenotypes associated with SCN5A loss-of-function.
    UNASSIGNED: Variant channel parameters generated independently at the 2 research sites showed strong correlations, including peak INa density (R2=0.86). The assay accurately distinguished benign controls (24/25 concordant variants) from pathogenic controls (23/24 concordant variants). Odds of pathogenicity values yielded 0.042 for normal function and 24.0 for abnormal function, corresponding to strong evidence for both American College of Medical Genetics and Genomics/Association for Molecular Pathology benign and pathogenic functional criteria (BS3 and PS3, respectively). Application of the assay to 4 clinical SCN5A variants of uncertain significance revealed loss-of-function for 3/4 variants, enabling reclassification to likely pathogenic.
    UNASSIGNED: This validated high-throughput assay provides clinical-grade functional evidence to aid the classification of current and future SCN5A-Brugada syndrome variants of uncertain significance.
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  • 文章类型: Journal Article
    早发性共济失调(EOA)是一组罕见的神经系统疾病,不仅涉及中枢和周围神经系统,还涉及其他器官。它们主要表现为25岁之前发生的小脑退化或异常发育,通常遗传模式是常染色体隐性遗传。常染色体隐性遗传小脑共济失调(ARCAs)的诊断得到临床证实,实验室,电生理检查,神经影像学发现,以及检测到致病基因时的突变分析。正确的诊断对于适当的遗传咨询至关重要,估计预后,and,在某些情况下,药理干预。具有异质性表型表现的各种基因型使得诊断工作具有挑战性,耗时,而且昂贵,不仅为临床医生,也为孩子和他们的父母。在这次审查中,我们关注的是小脑共济失调是一个突出的征兆的循序渐进的方法。我们还概述了共济失调中最常见的早发性疾病。
    Early onset ataxias (EOAs) are a heterogeneous group of rare neurological disorders that not only involve the central and peripheral nervous system but also involve other organs. They are mainly manifested by degeneration or abnormal development of the cerebellum occurring before the age of 25 years and typically the pattern of inheritance is autosomal recessive.The diagnosis of autosomal recessive cerebellar ataxias (ARCAs) is confirmed by the clinical, laboratory, electrophysiological examination, neuroimaging findings, and mutation analysis when the causative gene is detected. Correct diagnosis is crucial for appropriate genetic counseling, estimating the prognosis, and, in some cases, pharmacological intervention. The wide variety of genotypes with a heterogeneous phenotypic manifestation makes the diagnostic work-up challenging, time-consuming, and expensive, not only for the clinician but also for the children and their parents. In this review, we focused on the step-by-step approach in which cerebellar ataxia is a prominent sign. We also outline the most common disorders in ataxias with early-onset manifestations.
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  • 文章类型: Journal Article
    免疫出生缺陷(IEI)是一类主要由单基因突变导致的免疫细胞数量和(或)功能异常的遗传性疾病,部分IEI发病极早,甚至在宫内即出现严重的器官损害。IEI的产前干预对预防出生缺陷和提供更佳的治疗选择具有重要意义。近年来,扩展性携带者筛查、游离胎儿DNA检测、基因测序等技术在遗传性疾病的产前筛查及诊断中广泛被应用,宫内干细胞移植、宫内基因治疗等或将为遗传性疾病带去新的治疗希望,但目前针对IEI的产前干预研究有限。本文综述了IEI的产前筛查、产前诊断及可能的宫内治疗相关的研究及临床进展,以期促进临床对IEI产前干预的认知和恰当实践。.
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  • 文章类型: Journal Article
    脆性X综合征是智力障碍最常见的遗传形式。在年轻时识别脆性X综合征可能非常具有挑战性,因为经典的身体特征通常存在于儿童晚期或青春期早期;因此,重要的是要考虑对所有无法解释的发育迟缓的男性进行基因检测,智力残疾,自闭症,发育迟缓的女性,智力残疾或自闭症,有脆性X基因紊乱的家族史.没有特定的治疗方法来管理脆性X综合征。尽管如此,及时转诊早期干预对于帮助最大限度地提高儿童的学习潜力至关重要,以及转介儿童心理学,如果存在任何行为问题。对于有脆性X综合征病史的家庭来说,获得遗传咨询至关重要,因为它可以帮助未来的生殖决策和这种疾病未来复发的风险。[佩迪亚特·安。2024;53(7):e269-e271。].
    Fragile X syndrome is the most commonly inherited form of intellectual disability. Identifying fragile X syndrome at a young age can be quite challenging because the classical physical features usually present in late childhood or early adolescence; therefore, it is important to consider genetic testing for all males with unexplained developmental delays, intellectual disability, and autism, females with developmental delays, intellectual disability or autism, and a family history of fragile X gene disorders. There is no specific treatment to manage fragile X syndrome. Still, a prompt referral for early intervention is essential to help maximize the child\'s learning potential, as well as a referral to child psychology if any behavioral concerns are present. It is of paramount importance for families with a history of fragile X syndrome to have access to genetic counseling as it can aid in future reproductive decisions and the risk of future recurrences of this condition. [Pediatr Ann. 2024;53(7):e269-e271.].
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  • 文章类型: Journal Article
    由镶嵌变体产生的基因组镶嵌是描述具有与个体的种系细胞不同的基因组组成的细胞或细胞群体的存在的现象。它包括所有类型的遗传变异。很大一部分儿童遗传疾病被定义为从头,这意味着仅在先证者中检测到致病突变,不在任何父母。人口研究表明,80%的从头突变来自父系单倍型,也就是说,父系精子镶嵌症。本文就精子镶嵌的类型和检测策略作一综述。此外,它提供了关于最近的研究如何证明父母的基因组马赛克突变的讨论,尤其是父系精子中的那些,可能由后代遗传并导致儿童疾病。根据作者研究小组之前的发现,来自早期胚胎发生和原始生殖细胞阶段的精子镶嵌可以解释5%至20%的与临床表型相关的从头突变,并且可以作为罕见和复杂疾病的重要预测指标。精子镶嵌显示出临床遗传诊断和咨询的巨大潜力。根据已发表的文献,作者认为,在未来的研究中,应进行大规模的从头精子镶嵌突变筛查和基于人群的遗传筛查,这将大大增强后代的风险评估,并有效改善种群水平的遗传健康。实施从头突变的直接精子检测将显着提高患者队列分层的效率,并改善未来出生的复发风险评估。该领域的未来研究应集中在环境和生活方式因素对精子及其突变特征模型对后代健康的影响上。此外,精子突变的靶向体外建模也将是一个有希望的方向。
    Genomic mosaicism arising from mosaic variants is a phenomenon that describes the presence of a cell or cell populations with different genome compositions from the germline cells of an individual. It comprises all types of genetic variants. A large proportion of childhood genetic disorders are defined as being de novo, meaning that the disease-causing mutations are only detected in the proband, not in any of the parents. Population studies show that 80% of the de novo mutations arise from the paternal haplotype, that is, from paternal sperm mosaicism. This review provides a summary of the types and detection strategies of sperm mosaicism. In addition, it provides discussions on how recent studies demonstrated that genomic mosaic mutations in parents, especially those in the paternal sperms, could be inherited by the offspring and cause childhood disorders. According to the previous findings of the author\'s research team, sperm mosaicism derived from early embryogenesis and primordial germ cell stages can explain 5% to 20% of the de novo mutations related to clinical phenotypes and can serve as an important predictor of both rare and complex disorders. Sperm mosaicism shows great potential for clinical genetic diagnosis and consultations. Based on the published literature, the author suggests that, large-scale screening for de novo sperm mosaic mutations and population-based genetic screening should be conducted in future studies, which will greatly enhance the risk assessment in the offspring and effectively improve the genetic health at the population level. Implementation of direct sperm detection for de novo mutations will significantly increase the efficiency of the stratification of patient cohorts and improve recurrence risk assessment for future births. Future research in the field should be focused on the impact of environmental and lifestyle factors on the health of the offspring through sperms and their modeling of mutation signatures. In addition, targeted in vitro modeling of sperm mutations will also be a promising direction.
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  • 文章类型: Journal Article
    心血管疾病(CVDs)构成了重大的全球健康挑战,需要采取创新的初级预防方法。个性化预防,基于遗传风险评分(PRS)和数字技术,有望彻底改变CVD预防策略。然而,这些干预措施的临床疗效需要进一步研究.本研究提出了INNOPREV随机对照试验的方案,旨在评估PRS和数字技术在个性化心血管疾病预防中的临床疗效。
    INNOPREV试验是在意大利进行的四臂RCT。共有1,020人参加,根据SCORE2图表,年龄在40-69岁之间的10年心血管疾病风险较高,将被随机分配到传统的CVD风险评估中,基因检测(CVDPRS),数字干预(应用程序和智能乐队),或者基因检测和数字干预的结合。主要目标是评估提供CVDPRS信息的功效,在基线测量,单独或结合使用应用程序和智能乐队,在两个终点:生活方式的改变,和CVD风险概况的修改。参与者将在基线时进行全面评估和心血管评估,一次随访,五,和12个月。生活方式变化和心血管疾病风险状况将在初始评估之外的不同时间点进行评估。分别使用生活基本8和得分2。将在基线和研究完成时收集血液样品以评估脂质分布的变化。分析将采用调整后的混合效应模型进行重复测量,以评估随时间收集的数据的显着差异。此外,将检查潜在的主持人和调解员,以了解行为改变的潜在机制。
    作为这方面最大的试验,INNOPREV试验将有助于推进个性化心血管疾病预防,有可能对公共卫生产生积极影响,并减轻心血管疾病对医疗保健系统的负担。通过系统地检查PRS和数字干预的临床疗效,本试验旨在为指导未来的预防策略和提高人群健康结局提供有价值的证据.
    UNASSIGNED: Cardiovascular diseases (CVDs) pose a significant global health challenge, necessitating innovative approaches for primary prevention. Personalized prevention, based on genetic risk scores (PRS) and digital technologies, holds promise in revolutionizing CVD preventive strategies. However, the clinical efficacy of these interventions requires further investigation. This study presents the protocol of the INNOPREV randomized controlled trial, aiming to evaluate the clinical efficacy of PRS and digital technologies in personalized cardiovascular disease prevention.
    UNASSIGNED: The INNOPREV trial is a four-arm RCT conducted in Italy. A total of 1,020 participants, aged 40-69 with high 10-year CVD risk based on SCORE 2 charts, will be randomly assigned to traditional CVD risk assessment, genetic testing (CVD PRS), digital intervention (app and smart band), or a combination of genetic testing and digital intervention. The primary objective is to evaluate the efficacy of providing CVD PRS information, measured at baseline, either alone or in combination with the use of an app and a smart band, on two endpoints: changes in lifestyle patterns, and modification in CVD risk profiles. Participants will undergo a comprehensive assessment and cardiovascular evaluation at baseline, with follow-up visits at one, five, and 12 months. Lifestyle changes and CVD risk profiles will be assessed at different time points beyond the initial assessment, using the Life\'s Essential 8 and SCORE 2, respectively. Blood samples will be collected at baseline and at study completion to evaluate changes in lipid profiles. The analysis will employ adjusted mixed-effect models for repeated measures to assess significant differences in the data collected over time. Additionally, potential moderators and mediators will be examined to understand the underlying mechanisms of behavior change.
    UNASSIGNED: As the largest trial in this context, the INNOPREV trial will contribute to the advancement of personalized cardiovascular disease prevention, with the potential to positively impact public health and reduce the burden of CVDs on healthcare systems. By systematically examining the clinical efficacy of PRS and digital interventions, this trial aims to provide valuable evidence to guide future preventive strategies and enhance population health outcomes.
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  • 文章类型: Journal Article
    目的:研究1例与ADAR1基因变异体的临床和遗传特征。
    方法:选择2020年6月郑州大学第一附属医院皮肤科因手背不规则色素性斑丘疹入院的患儿为研究对象。对孩子和他同样受影响的父亲进行了全外显子组测序(WES),和Sanger测序用于验证候选变体。SWISS-MODEL用于预测野生型和突变型ADAR1蛋白的二级和三级结构。
    结果:孩子,一个13岁的男孩,他的手背上有对称的色素沉着和色素沉着斑点,临床诊断为DSH。WES和Sanger测序结果表明,他和他的父亲都拥有杂合的c.2858dup(p。T954Dfs*20)ADAR1基因外显子10中的截短变体。根据美国医学遗传学和基因组学学院的指南,该变异体被预测为致病性(PVS1+PM2_支持+PM1+PP3)。
    结论:c.2858dup(p。T954Dfs*20)ADAR1基因的变体可能是该谱系中DSH的基础。
    OBJECTIVE: To investigate the clinical and genetic features of a child with Dyschromatosis symmetrica hereditaria (DSH) and variant of the ADAR1 gene.
    METHODS: A child who was admitted to the Department of Dermatology of the First Affiliated Hospital of Zhengzhou University in June 2020 due to irregular pigmented maculopapular rash on the dorsum of hands was selected as the study subject. Whole exome sequencing (WES) was carried out for the child and his similarly affected father, and Sanger sequencing was used to verify the candidate variant. SWISS-MODEL was used to predict the secondary and tertiary structures of the wild-type and mutant ADAR1 proteins.
    RESULTS: The child, a 13-year-old boy, had symmetrical hyperpigmented and depigmented spots on the back of his hands and was clinically diagnosed with DSH. WES and Sanger sequencing results showed that he and his father had both harbored a heterozygous c.2858dup (p.T954Dfs*20) truncating variant in exon 10 of the ADAR1 gene. Based on the guidelines from the American College of Medical Genetics and Genomics, the variant was predicted as pathogenic (PVS1+PM2_Supporting+PM1+PP3).
    CONCLUSIONS: The c.2858dup (p.T954Dfs*20) variant of the ADAR1 gene probably underlay the DSH in this pedigree.
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  • 文章类型: Journal Article
    目的:探讨一例以根佐树骨发育不良为特征的胎儿的临床特征和遗传基础。
    方法:选取2020年11月在苏州市医院生殖遗传中心确诊的胎儿作为研究对象。对胎儿及其父母进行全外显子组测序(WES)。通过Sanger测序验证候选变体。还检查了父母双方的外周血涂片。
    结果:发现胎儿胸部小,四肢短,这表明骨骼发育不良。基因检测显示,胎儿携带了LBR基因的复合杂合变体,包括父系衍生的c.1687+1G>A和母系衍生的c.1757G>A(p。Arg586His)。父亲的血液涂片显示Pelger-Huet异常,中性粒细胞核缺核,而母亲的中性粒细胞似乎正常。根据美国医学遗传学和基因组学学院(ACMG)和分子病理学协会(AMP)的指南,c.1757G>A(p。Arg586His)变异体被分类为可能致病(PM3_Strong+PM2_Supporting+PP3),c.1687+1G>A变体(PVS1-中等+PM3+PM2-支持+PP4)也是如此。
    结论:LBR基因的复合杂合变体可能是该胎儿骨骼发育不良的发病机制。
    OBJECTIVE: To explore the clinical features and genetic basis for a fetus featuring Rhizomelic skeletal dysplasia.
    METHODS: A fetus diagnosed at the Reproductive and Genetic Center of Suzhou Municipal Hospital in November 2020 was selected as the study subject. Whole exome sequencing (WES) was carried out for the fetus and its parents. Candidate variants were verified by Sanger sequencing. Peripheral blood smears of both parents were also examined.
    RESULTS: The fetus was found to have a small chest and short limbs, which had suggested skeletal dysplasia. Genetic testing revealed that the fetus has harbored compound heterozygous variants of the LBR gene, including a paternally derived c.1687+1G>A and a maternally derived c.1757G>A (p.Arg586His). The blood smear of the father showed Pelger-Huet anomaly with hyposegmentation of neutrophil nuclei, while the neutrophils of the mother appeared to be normal. Based on the guidelines from the American College of Medical Genetics and Genomics (ACMG) and the Association for Molecular Pathology (AMP), the c.1757G>A (p.Arg586His) variant was classified as likely pathogenic (PM3_Strong+PM2_Supporting+PP3), and so was the c.1687+1G>A variant (PVS1-Moderate+PM3+PM2-Supporting+PP4).
    CONCLUSIONS: The compound heterozygous variants of the LBR gene probably underlay the pathogenesis of skeletal dysplasia in this fetus.
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