prognostic markers

预后标志物
  • 文章类型: Journal Article
    慢性急性肝衰竭(ACLF)的并发症包括短期死亡率增加。肝外器官衰竭是由慢性肝病和急性肝损伤引起的。这种组合表征终末期肝病。它的快速发展使得肝病学家和重症医师治疗具有挑战性。这种情况的不同定义导致不同的临床表现。肝或肝外衰竭在接受额外损伤的慢性乙型肝炎或肝硬化患者中更为普遍。许多强度参数和预后评级,包括那些乙型肝炎病毒(HBV),已经为各种患者和疾病的原因开发和验证。肝再生,肝移植,或HBV相关ACLF的抗病毒治疗是各种器官衰竭的主要治疗目标。LT是HBV-ACLF的最佳治疗方法。在一些HBV相关的ACLF患者,核苷(t)ide类似物和人工肝辅助可以提高存活率。结合流行病学和临床研究,这篇综述更新了我们对HBV-ACLF定义的理解,诊断,流行病学,病因学,治疗,和预后。
    Complications of acute-on-chronic liver failure (ACLF) include increased short-term mortality. Extrahepatic organ failures result from chronic liver disease and acute hepatic injury. This combination characterizes end-stage liver disease. Its rapid progression makes it challenging for hepatologists and intensivists to treat. The varied definitions of this condition lead to varied clinical presentations. Hepatic or extrahepatic failures are more prevalent in chronic hepatitis B or cirrhosis patients who receive an additional injury. Numerous intensity parameters and prognosis ratings, including those for hepatitis B virus (HBV), have been developed and verified for various patients and causes of the disease. Liver regeneration, liver transplantation (LT), or antiviral therapy for HBV-related ACLF are the main treatment aims for various organ failures. LT is the best treatment for HBV-ACLF. In some HBV-related ACLF patients, nucleos(t)ide analogs and artificial liver assistance may enhance survival. Combining epidemiological and clinical studies, this review updates our understanding of HBV-ACLF\'s definition, diagnosis, epidemiology, etiology, therapy, and prognosis.
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  • 文章类型: Journal Article
    背景:前列腺癌仍然是肿瘤学的一个突出挑战,晚期显示预后不良。肿瘤微环境(TME),特别是肿瘤相关巨噬细胞(TAMs),在疾病进展中起着至关重要的作用。这项研究探讨了前列腺癌的单细胞转录组学,决定了巨噬细胞的异质性,确定预后基因标记,
    方法:处理来自GEO数据库(GSE176031)的单细胞RNA测序数据和来自TCGA的转录组数据,以表征细胞群体并鉴定前列腺癌的预后基因。巨噬细胞亚群通过聚类检查,然后是基于迁移的基因集评分,激活,和扩散。在匹配的前列腺癌和邻近的非肿瘤组织上使用多重免疫荧光染色研究巨噬细胞中的PPIF表达。
    结果:单细胞分析确定了9,178个细胞,分为10种主要细胞类型,巨噬细胞构成免疫微环境的重要部分。四个巨噬细胞亚群表现出不同的功能途径:吞噬,免疫调节,和增殖。共鉴定出39个与前列腺癌预后相关的基因。其中10个携带最重要的预后信息。肿瘤组织TAMs中的肽基丙氨酰基异构酶F(PPIF)表达明显高于正常组织,表明其在免疫微环境中的潜在调节作用。
    结论:已经阐明了前列腺癌TME的复杂细胞结构,重点关注巨噬细胞异质性和功能特化。预后基因,包括PPIF,与生存结果相关,提供潜在的治疗靶点。PPIF在TAM中的突出表达可能是癌症进展的杠杆,保证进一步研究作为生物标志物和感兴趣的分子用于前列腺癌环境中的治疗靶向。
    BACKGROUND: Prostate cancer remains a prominent challenge in oncology, with advanced stages showing poor prognosis. The tumor microenvironment (TME), and particularly tumor-associated macrophages (TAMs), plays a crucial role in disease progression. This study explores the single-cell transcriptomics of prostate cancer, determines macrophage heterogeneity, identifies prognostic gene markers, and assesses the role of PPIF in TAMs.
    METHODS: Single-cell RNA sequencing data from the GEO database (GSE176031) and transcriptome data from the TCGA were processed to characterize cell populations and identify prognostic genes in prostate cancer. Macrophage subpopulations were examined through clustering, followed by gene set scoring based on migration, activation, and proliferation. PPIF expression in macrophages was investigated using multiplex immunofluorescence staining on matched prostate cancer and adjacent non-tumoral tissues.
    RESULTS: The single-cell analysis identified 9,178 cells, categorized into 10 principal cell types, with macrophages constituting a significant part of the immune microenvironment. Four macrophage subgroups demonstrated distinct functional pathways: phagocytic, immune-regulatory, and proliferative. A total of 39 genes correlated with prostate cancer prognosis were identified, of which 10 carried the most significant prognostic information. Peptidylprolyl Isomerase F (PPIF) expression was significantly higher in TAMs from tumor tissue than normal tissue, indicating its potential regulatory role in the immune microenvironment.
    CONCLUSIONS: The intricate cellular architecture of the prostate cancer TME has been elucidated, with a focus on macrophage heterogeneity and functional specialization. Prognostic genes, including PPIF, were associated with survival outcomes, providing potential therapeutic targets. PPIF\'s prominent expression in TAMs may serve as a lever in cancer progression, warranting further investigation as a biomarker and a molecule of interest for therapeutic targeting within the prostate cancer milieu.
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  • 文章类型: Journal Article
    对苯二胺是许多商业染发剂中的主要成分,急性摄入或皮肤吸收后可产生严重的局部和全身毒性反应。这项研究的目的是评估导致急性对苯二胺中毒病例的发病率和死亡率的因素。重点评估由此产生的肝和心脏毒性。
    这项观察性研究是针对在Sohag大学医院就诊的急性对亚苯基二胺中毒患者进行的,并包括2021年2月至2022年1月的回顾性部分和2022年2月至2022年7月的预期部分。提取临床数据并创建接受者操作特征曲线以鉴定预后标志物。
    在50名符合条件的患者中,有39名(78%)康复,11人(22%)死亡或有永久性并发症。在复杂病例中,血管性水肿和无尿是最常见的特征。通过接收机工作特性分析,天冬氨酸转氨酶活性的增加大于644IU/L或丙氨酸转氨酶活性大于798IU/L,提交的时间延迟超过4.5小时,pH值小于7.32与发病率和死亡率的显著增加相关.虽然心脏酶活性,在大多数情况下,血尿素氮和肌酐的浓度增加,它们与死亡率无关.
    对亚苯基二胺中毒患者的处理主要是支持性的,因为没有特定的解毒剂。呼吸衰竭和肾衰竭是最危及生命的并发症。也发生肝毒性和心脏毒性。预测事件的能力可以帮助指导患者的处置和护理。
    肝酶活性升高,增加了入院的时间延迟,pH值降低,血管性水肿和无尿的存在可以作为急性对苯二胺中毒患者发病率和死亡率的预测因子。
    UNASSIGNED: Paraphenylenediamine is the main component in many commercial hair dyes, and can produce severe local and systemic toxicity reactions after acute ingestion or dermal absorption. The aim of this study was to assess the factors contributing to morbidity and mortality in cases of acute paraphenylenediamine poisoning, with a focus on evaluating the resultant hepatic and cardiac toxicity.
    UNASSIGNED: This observational study was conducted on patients with acute paraphenylenediamine poisoning presenting to Sohag University Hospitals, and included a retrospective part from February 2021 to January 2022 and a prospective part from February 2022 to July 2022. Clinical data were extracted and receiver operating characteristic curves created to identify prognostic markers.
    UNASSIGNED: Among 50 eligible patients 39 (78 percent) recovered, and 11 (22 percent) died or had permanent complications. Angioedema and anuria were the most frequent features in complicated cases. By receiver operating characteristic analysis, either an increase in aspartate aminotransferase activity greater than 644 IU/L or alanine aminotransferase activity greater than 798 IU/L, a time delay to presentation of greater than 4.5 hours, and a pH of less than 7.32 were associated with a significant increase in morbidity and mortality. While cardiac enzyme activities, and concentrations of blood urea nitrogen and creatinine increased in most cases, they were not associated with mortality.
    UNASSIGNED: Management of patients with paraphenylenediamine poisoning is mainly supportive, as there is no specific antidote. Respiratory failure and kidney failure are the most life threatening complications. Hepatoxicity and cardiotoxicity also occur. The ability to predict the events can help guide patient disposition and care.
    UNASSIGNED: Elevated liver enzyme activities, increased time delay to admission, decreased pH, and the presence of angioedema and anuria can be used as predictors of morbidity and mortality in patients with acute paraphenylenediamine poisoning.
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  • 文章类型: Journal Article
    导致癌症的异常细胞增殖和生长主要由累积基因组突变引起。单基因突变本身并不能完全解释癌症的发病和进展;相反,聚集突变-多个突变的同时发生-被认为是癌症发展和进展的关键.这些突变会影响不同的基因和途径,导致细胞发生多种功能异常的恶性转化。聚集突变会影响癌症的生长速度,转移潜能,和药物治疗敏感性。本摘要强调了聚集突变的各种类型和特征,以了解它们与癌变的关系,并讨论了它们在癌症中的潜在临床意义。作为一种独特的突变类型,聚集突变可能涉及基因组不稳定性,DNA修复机制缺陷,和环境暴露,可能与免疫疗法的反应性相关。了解聚集突变的特征和潜在过程可以增强我们对癌发生和癌症进展的理解,为癌症提供新的诊断和治疗方法。
    Abnormal cell proliferation and growth leading to cancer primarily result from cumulative genome mutations. Single gene mutations alone do not fully explain cancer onset and progression; instead, clustered mutations-simultaneous occurrences of multiple mutations-are considered to be pivotal in cancer development and advancement. These mutations can affect different genes and pathways, resulting in cells undergoing malignant transformation with multiple functional abnormalities. Clustered mutations influence cancer growth rates, metastatic potential, and drug treatment sensitivity. This summary highlights the various types and characteristics of clustered mutations to understand their associations with carcinogenesis and discusses their potential clinical significance in cancer. As a unique mutation type, clustered mutations may involve genomic instability, DNA repair mechanism defects, and environmental exposures, potentially correlating with responsiveness to immunotherapy. Understanding the characteristics and underlying processes of clustered mutations enhances our comprehension of carcinogenesis and cancer progression, providing new diagnostic and therapeutic approaches for cancer.
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  • 文章类型: Journal Article
    在肝细胞癌(HCC)患者中,肝切除术是潜在的治愈。然而,术后复发很常见,发生在高达70%的患者。传统上公认的预测肝癌肝切除术后复发和生存的因素包括病理因素(即,微血管和囊的侵袭)和甲胎蛋白水平的增加。在过去的十年里,据报道,许多新的标志物与HCC切除术后的预后相关:液体活检标志物,基因签名,炎症标志物,和其他生物标志物,包括PIVKA-II,免疫检查点分子,和尿液外泌体中的蛋白质。然而,并不是所有这些新的标志物都可以在临床实践中获得,它们的可重复性尚不清楚。液体活检是预测HCC切除后长期结果的强大而成熟的工具;液体活检的主要限制是由与其技术实施相关的成本代表。已经确定了许多能够预测肝癌根治性肝切除术后生存的基因表达模式,但是关于这些标记的已发表发现是异质的。预后营养指数和不同血细胞比例形式的炎症标志物似乎比其他新兴标志物更容易再现,并且更容易大规模地负担得起。为肝癌患者选择最有效的治疗方法,至关重要的是,科学界必须验证新的可靠且可广泛重复的肿瘤切除术后复发和生存的预测标志物.西方国家的更多报告是必要的,以证实证据。
    In patients with hepatocellular carcinoma (HCC), liver resection is potentially curative. Nevertheless, post-operative recurrence is common, occurring in up to 70% of patients. Factors traditionally recognized to predict recurrence and survival after liver resection for HCC include pathologic factors (i.e., microvascular and capsular invasion) and an increase in alpha-fetoprotein level. During the past decade, many new markers have been reported to correlate with prognosis after resection of HCC: liquid biopsy markers, gene signatures, inflammation markers, and other biomarkers, including PIVKA-II, immune checkpoint molecules, and proteins in urinary exosomes. However, not all of these new markers are readily available in clinical practice, and their reproducibility is unclear. Liquid biopsy is a powerful and established tool for predicting long-term outcomes after resection of HCC; the main limitation of liquid biopsy is represented by the cost related to its technical implementation. Numerous patterns of genetic expression capable of predicting survival after curative-intent hepatectomy for HCC have been identified, but published findings regarding these markers are heterogenous. Inflammation markers in the form of prognostic nutritional index and different blood cell ratios seem more easily reproducible and more affordable on a large scale than other emerging markers. To select the most effective treatment for patients with HCC, it is crucial that the scientific community validate new predictive markers for recurrence and survival after resection that are reliable and widely reproducible. More reports from Western countries are necessary to corroborate the evidence.
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  • 文章类型: Journal Article
    背景:尽管已经在胶质母细胞瘤中确定了几种生存的预后因素,还有许多其他潜在的标志物(如血红蛋白),其作用尚未得到证实。这项研究的目的是评估广泛的潜在预后因素,包括HIF-1α和血红蛋白水平,在胶质母细胞瘤中存活。次要目的是确定血红蛋白水平是否与HIF-1α表达相关。方法:对我院2012年至2021年收治的136例胶质母细胞瘤患者进行回顾性研究。进行Cox单变量和多变量分析。产生Kaplan-Meier存活曲线。此外,对关键变量进行双变量非参数相关分析.结果:中位生存期为11.9个月(范围:0-119.4)。根据单变量分析,13个变量与生存率显着相关:年龄,性能状态,手术范围,肿瘤深度,肿瘤大小,癫痫,术后放化疗,IDH突变,CD44,HIF-1α,HIF-1β,波形蛋白,和PDFGR。根据多元回归分析,只有四个变量与生存率显着相关:年龄,手术范围,癫痫,和HIF-1α表达。血红蛋白水平之间未观察到显着关联(女性<120g/L或男性<140g/L与高≥120或≥140g/L)和生存率或HIF-1α/HIF-1β表达。结论:在这项对胶质母细胞瘤患者的回顾性研究中,四个变量-年龄,手术范围,HIF-1α表达,和癫痫-是生存的重要预后因素。血红蛋白水平与生存率或HIF-1α表达无显著相关。尽管缺氧是胶质母细胞瘤微环境的公认组成部分,需要更多的研究来了解肿瘤缺氧的发病机制和治疗意义。
    Background: Although several prognostic factors for survival have been identified in glioblastoma, there are numerous other potential markers (such as hemoglobin) whose role has not yet been confirmed. The aim of this study was to evaluate a wide range of potential prognostic factors, including HIF-1α and hemoglobin levels, for survival in glioblastoma. A secondary aim was to determine whether hemoglobin levels were associated with HIF-1α expression. Methods: A retrospective study of 136 patients treated for glioblastoma at our institution between 2012 and 2021 was performed. Cox univariate and multivariate analyses were carried out. Kaplan-Meier survival curves were generated. In addition, bivariate non-parametric correlation analyses were performed for key variables. Results: Median survival was 11.9 months (range: 0-119.4). According to the univariate analysis, 13 variables were significantly associated with survival: age, performance status, extent of surgery, tumor depth, tumor size, epilepsy, postoperative chemoradiotherapy, IDH mutations, CD44, HIF-1α, HIF-1β, vimentin, and PDFGR. According to the multivariate regression analysis, only four variables remained significantly associated with survival: age, extent of surgery, epilepsy, and HIF-1α expression. No significant association was observed between hemoglobin levels (low <120 g/L in females or <140 g/L in males vs. high ≥120 or ≥140 g/L) and survival or HIF-1α/HIF-1β expression. Conclusions: In this retrospective study of patients with glioblastoma, four variables-age, extent of surgery, HIF-1α expression, and epilepsy-were significant prognostic factors for survival. Hemoglobin levels were not significantly associated with survival or HIF-1α expression. Although hypoxia is a well-recognized component of the glioblastoma microenvironment, more research is needed to understand the pathogenesis of onset tumor hypoxia and treatment implication.
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  • 文章类型: Journal Article
    高级别浆液性卵巢癌(HGSOC)是卵巢癌最常见的组织学类型之一。这项研究的目的是确定HGSOC患者尿液标本中潜在的预后生物标志物。首先,收集56例含无复发生存期(RFS)月信息的尿液样本,分为预后良好(RFS≥12个月)和预后不良(RFS<12个月)组。接下来,基于数据独立采集(DIA)的质谱(MS)分析与MSFragger-DIA工作流程相结合,在发现集中鉴定潜在的预后生物标志物(n=31).借助平行反应监测(PRM)分析,四种候选生物标志物(ANXA1、G6PI、SPB3和SPRR3)最终在发现集和独立验证集(n=25)中进行了验证。随后的RFS和Cox回归分析证实了这些候选生物标志物作为影响HGSOC患者RFS的独立预后因素的效用。构建回归模型来预测12个月的RFS率,接收器工作特性曲线下面积(AUC)值范围为0.847至0.905。总的来说,在HGSOC患者的尿液标本中鉴定了候选预后生物标志物,并构建了12个月RFS率的预测模型.意义:OC是妇科恶性肿瘤死亡的主要原因之一。HGSOC是最常见的OC组织学类型之一,具有侵袭性特征,占先进案例的大多数。如果晚期HGSOC患者在12个月内可能面临不良预后或疾病进展的高风险,加强医疗监测是必要的。在精准癌症医学时代,准确预测预后或12个月RFS率对于区分需要加强监测的患者群体至关重要.根据临床监测结果,患者可以从及时修改治疗方案中获益。由于尿液易于获取,因此尿液是用于疾病监测目的的理想资源。此外,尿液中排泄的分子比其他液体样品中的分子更不复杂,更稳定。在目前的研究中,我们在HGSOC患者的尿液标本中鉴定了候选预后生物标志物,并构建了12个月RFS率的预测模型.
    High-grade serous ovarian cancer (HGSOC) is one of the most common histologic types of ovarian cancer. The purpose of this study was to identify potential prognostic biomarkers in urine specimens from patients with HGSOC. First, 56 urine samples with information on relapse-free survival (RFS) months were collected and classified into good prognosis (RFS ≥ 12 months) and poor prognosis (RFS < 12 months) groups. Next, data-independent acquisition (DIA)-based mass spectrometry (MS) analysis was combined with MSFragger-DIA workflow to identify potential prognostic biomarkers in a discovery set (n = 31). With the aid of parallel reaction monitoring (PRM) analysis, four candidate biomarkers (ANXA1, G6PI, SPB3, and SPRR3) were finally validated in both the discovery set and an independent validation set (n = 25). Subsequent RFS and Cox regression analyses confirmed the utility of these candidate biomarkers as independent prognostic factors affecting RFS in patients with HGSOC. Regression models were constructed to predict the 12-month RFS rate, with area under the receiver operating characteristic curve (AUC) values ranging from 0.847 to 0.905. Overall, candidate prognostic biomarkers were identified in urine specimens from patients with HGSOC and prediction models for the 12-month RFS rate constructed. SIGNIFICANCE: OC is one of the leading causes of death due to gynecological malignancies. HGSOC constitutes one of the most common histologic types of OC with aggressive characteristics, accounting for the majority of advanced cases. In cases where patients with advanced HGSOC potentially face high risk of unfavorable prognosis or disease advancement within a 12-month period, intensive medical monitoring is necessary. In the era of precision cancer medicine, accurate prediction of prognosis or 12-month RFS rate is critical for distinguishing patient groups requiring heightened surveillance. Patients could significantly benefit from timely modifications to treatment regimens based on the outcomes of clinical monitoring. Urine is an ideal resource for disease surveillance purposes due to its easy accessibility. Furthermore, molecules excreted in urine are less complex and more stable than those in other liquid samples. In the current study, we identified candidate prognostic biomarkers in urine specimens from patients with HGSOC and constructed prediction models for the 12-month RFS rate.
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  • 文章类型: Journal Article
    介绍细胞周期蛋白依赖性激酶抑制剂2A(CDKN2A)是一种抑制致癌基因,在包括乳腺癌在内的各种类型的癌症中上调。肝脏,甲状腺,和胆管癌由于其在细胞周期调节和细胞分裂中的关键作用。然而,它主要是在基因水平上进行研究,但在泛癌症分析中作为生物标志物的研究仍然很少,这项研究显示了其显著的潜在诊断和预后特征。然而,本研究旨在探讨CDKN2A作为诊断和预后生物标志物在各种类型癌症中的作用,主要集中在结肠腺癌(COAD).方法我们在不同类型癌症的泛癌症分析中调查了CDKN2A基因表达,以通过使用各种生物信息学工具显示其诊断潜力特征。包括肿瘤免疫评估资源(TIMER)2.0,基因表达谱交互式分析(GEPIA),和阿拉巴马大学伯明翰癌症数据分析门户(UALCAN)数据库。TIMER用于对由从癌症基因组图谱(TCGA)获得的10,000个RNA-seq样品组成的32种癌症类型的基因表达进行分析,并分析肿瘤浸润免疫细胞。此外,GEPIA和UALCAN进一步用于分析基因表达,在基因调控方面,病理阶段,和临床参数,包括性别,年龄,和种族。因此,我们用了GEPIA,UALCAN,和Kaplan-Meier绘图仪,特别是在腺癌中,通过研究CDKN2A的高表达与患者的总体生存率的相关性来研究CDKN2A的预后,以显示肿瘤的进展。然后,我们通过使用cBio癌症基因组学门户(cBioPortal)研究了CDKN2A的遗传改变,包括10项泛癌症研究。我们通过使用基因表达综合(GEO)的公共队列来总结基因验证分析。结果CDKN2A在大多数癌症中呈上调趋势,在5种癌症中呈明显上调趋势。它们通常可以在三个数据库中识别,包括乳腺浸润性癌(p<0.001),肾发色(p<0.001),肾透明细胞癌(p<0.001),肾乳头状细胞癌(p<0.001),和COAD(p<0.001)。与致病阶段II和III相关的上调显着不同(pr(>F)=0.00234),这在COAD中比在其他癌症中更明显。该基因显示出与三种癌症患者生存预后不良相关的高上调,包括COAD(对数秩p=0.011),间皮瘤(log-rankp=5.9e-07),和肝细胞癌(log-rankp=0.0045)。因此,COAD是唯一一种在CDKN2A高上调期间显示诊断和预后潜力特征的综合分析肿瘤。此外,CDKN2A以深度缺失(9%)的形式显示出罕见的突变,并显示出与CD4T细胞相关的上调(p=0.0108),巨噬细胞(p=0.0073),和嗜中性粒细胞(p=0.0272)作为免疫细胞浸润COAD。结论我们的研究证明了CDKN2A的泛癌症相关性,并揭示了显示CDKN2A的新颖性,强调了其作为COAD诊断预后生物标志物的潜力,因为CDKN2A主要在COAD的遗传水平上进行研究。
    Introduction Cyclin-dependent kinase inhibitor 2A (CDKN2A) is a suppressor carcinogenic gene that is upregulated across various types of cancer including breast, liver, thyroid, and bile duct cancer due to its crucial role in cell cycle regulation and cell division. Nevertheless, it is mostly investigated at the genetic level, but it is still poorly studied on pan-cancer analysis as a biomarker and this study shows its significant potential diagnostic and prognostic characteristics. However, this study aims to investigate the role of CDKN2A as a diagnostic and prognostic biomarker across various types of cancer focusing primarily on colon adenocarcinoma (COAD). Methods We investigated CDKN2A gene expression in a pan-cancer analysis across different types of cancer to show its diagnostic potential characteristics by using various bioinformatic tools, including Tumor Immune Estimation Resource (TIMER) 2.0, Gene Expression Profiling Interactive Analysis (GEPIA), and University of Alabama at Birmingham Cancer Data Analysis Portal (UALCAN) database. TIMER was used to profile gene expression across 32 types of cancer composed of 10,000 RNA-seq samples obtained from the Cancer Genome Atlas (TCGA) and to analyze the tumor-infiltrating immune cells. In addition, GEPIA and UALCAN were further used to analyze gene expression, in terms of gene regulation, pathological stages, and clinical parameters, including gender, age, and race. Therefore, we used GEPIA, UALCAN, and Kaplan-Meier plotter particularly across adenocarcinoma to investigate CDKN2A prognosis by studying its high expression association with the patient\'s overall survival rate to show the tumor progression. Then, we looked into the genetic alteration of CDKN2A by using the cBio Cancer Genomics Portal (cBioPortal), including 10 pan-cancer studies. We concluded the analysis with gene validation by using a public cohort in Gene Expression Omnibus (GEO). Results CDKN2A showed a trend of upregulation in most cancers and it was significantly upregulated in five cancers, which were commonly identifiable in three databases, including breast invasive carcinoma (p < 0.001), kidney chromophobe (p < 0.001), kidney renal clear cell carcinoma (p < 0.001), kidney renal papillary cell carcinoma (p < 0.001), and COAD (p < 0.001). The upregulation was significantly different in association with pathogenic stages II and III (pr(>F) = 0.00234) which was identifiable significantly in COAD more than in other cancers. The gene showed a high upregulation in association with poor prognosis of patient survival in three cancers, including COAD (log-rank p = 0.011), mesothelioma (log-rank p = 5.9e-07), and liver hepatocellular carcinoma (log-rank p = 0.0045). Therefore, COAD was the only comprehensively analyzed tumor to show a diagnostic and prognostic potential characteristic during high upregulation of CDKN2A. Furthermore, CDKN2A displayed a rare mutation in the form of deep deletion (9%) and revealed an upregulation associated with CD4+ T cells (p = 0.0108), macrophage (p = 0.0073), and neutrophils (p = 0.0272) as immune cells infiltrating COAD.  Conclusion Our study demonstrates the pan-cancer relevance of CDKN2A and revealed a novelty in showing CDKN2A underscores its potential as a diagnostic prognostic biomarker in COAD since CDKN2A is mostly studied at a genetic level across COAD.
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  • 文章类型: Journal Article
    本研究论文提出了一种新的方法来识别可用于预测有资格接受新辅助治疗的三阴性乳腺癌(TNBC)患者的生物标志物。该研究利用了一组TNBC患者的生存和RNA测序数据,并鉴定了276个基因,这些基因的表达与这些患者的生存有关。然后基于无翼/整合途径(Wnt途径)和间充质(Mes)标志物(Wnt/Mes)的存在或不存在,使用基因表达数据将患者分为两个主要组。Wnt/Mes相关基因低表达的患者具有良好的预后,在随访期间没有观察到死亡,而Wnt/Mes基因高表达的患者在19个月内的死亡率更高,为50%。鉴定的基因列表可以被验证,并可能用于确定符合新辅助治疗条件的TNBC患者的治疗选择,从而为开发更有效的TNBC治疗提供有价值的见解。我们的数据还显示化疗前后基因表达谱的显著变化,大多数肿瘤转变为更多的间充质/干细胞样特征。为了验证这一观察,我们使用基因表达数据,在治疗前和治疗后的微阵列50预测分析(PAM50)分子类别中进行了芯片分析以对乳腺癌肿瘤进行分类.我们的发现表明,在药物干预和转移后,某些肿瘤经历了向替代亚型的转变,导致疗效下降。这强调了重新评估化疗后复发或转移的患者的必要性。专注于分子亚型。基于这些完善的亚型定制治疗策略对于优化受影响个体的治疗结果至关重要。
    This research paper presents a novel approach to identifying biomarkers that can be used to prognosticate patients with triple-negative breast cancer (TNBC) eligible for neoadjuvant therapy. The study utilized survival and RNA sequencing data from a cohort of TNBC patients and identified 276 genes whose expression was related to survival in such patients. The gene expression data were then used to classify patients into two major groups based on the presence or absence of Wingless/Integrated-pathway (Wnt-pathway) and mesenchymal (Mes) markers (Wnt/Mes). Patients with a low expression of Wnt/Mes-related genes had a favorable outcome, with no deaths observed during follow-up, while patients with a high expression of Wnt/Mes genes had a higher mortality rate of 50% within 19 months. The identified gene list could be validated and potentially used to shape treatment options for TNBC patients eligible for neoadjuvant therapy providing valuable insights into the development of more effective treatments for TNBC. Our data also showed significant variation in gene expression profiles before and after chemotherapy, with most tumors switching to a more mesenchymal/stem cell-like profile. To verify this observation, we performed an in silico analysis to classify breast cancer tumors in Prediction Analysis of Microarray 50 (PAM50) molecular classes before treatment and after treatment using gene expression data. Our findings demonstrate that following drug intervention and metastasis, certain tumors undergo a transition to alternative subtypes, resulting in diminished therapeutic efficacy. This underscores the necessity for reevaluation of patients who have experienced relapse or metastasis post-chemotherapy, with a focus on molecular subtyping. Tailoring treatment strategies based on these refined subtypes is imperative to optimize therapeutic outcomes for affected individuals.
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  • 文章类型: Journal Article
    背景:慢性淋巴细胞白血病(CLL)是成人最常见的白血病。目前,几种生物标志物被用作CLL预测因子,包括蛋白质水平升高,RNA水平升高,基因突变,和表观遗传变化。材料和方法:本研究是一项前瞻性研究,对55例新诊断为CLL的患者进行,最初和治疗6个月后测量血清IL-6水平。最初和6个月后进行与病程和已知CLL预后参数的相关性。结果:患者组(治疗前)的初始血清IL-6水平范围为36-91pg/mL(中位数为57),患者组(治疗后)的范围为1-32pg/mL(中位数2)。血清IL-6水平与白细胞计数呈正相关,β2微球蛋白,LDH,ESR,B症状,尿酸,BM吸出(淋巴细胞的百分比),以及Binet和Rai分期系统。结论:血清IL-6是新诊断CLL患者的一个有用的不良预后标志物;其预后价值与其他已知的预后标志物如BM淋巴细胞计数,ESR,LDH。
    Background: Chronic lymphocytic leukemia (CLL) is the most common leukemia in adults. Currently, several biomarkers are being used as CLL prognosticators, including elevated protein levels, elevated RNA levels, gene mutations, and epigenetic changes. Materials and Methods: This study is a prospective study conducted on 55 patients newly diagnosed with CLL, serum IL-6 level was measured initially and after a 6-month treatment course. Correlation with the course of the disease and the known CLL prognostic parameters was done initially and after 6 months. Results: The initial serum IL-6 level in the patient group (pre-treatment) ranges from 36-91 pg/mL (median 57), and in the patient group (post-treatment) ranges from 1-32 pg/mL (median 2). Serum IL-6 level was positively correlated with WBC count, β2 microglobulin, LDH, ESR, B symptoms, Uric Acid, BM Aspirate (% of lymphocytes), and Binet and Rai staging systems. Conclusion: Serum IL-6 is a useful poor prognostic marker in newly diagnosed CLL patients; its prognostic value goes with the other known prognostic markers such as the BM lymphocyte count, ESR, and LDH.
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