molecular autopsy

分子尸检
  • 文章类型: Journal Article
    尽管经过法医检查,突然的意外死亡通常仍未解决,给病理学家带来挑战。分子尸检,通过基因检测,可以揭示标准方法无法检测到的隐藏原因。这篇综述评估了分子尸检在澄清SUD病例中的作用,检查其方法论,实用程序,以及尸检实践的有效性。该系统评价遵循PRISMA指南,并在PROSPERO注册(注册号:CRD42024499832)。在PubMed上搜索,Scopus,和WebofScience确定了有关猝死病例的分子尸检的英语研究(2018-2023)。根据纳入/排除标准记录和过滤来自选定研究的数据。描述性统计分析了研究范围,组织使用情况,出版国家,和期刊。共发现过去5年的1759种出版物,排除了30个重复项。经过详细考虑,1645种出版物也被排除在外,留下84篇全文供选择。在这些中,选择了37篇全文进行分析。分析了不同的研究类型。在17项研究中发现了突变,总共有47个突变.当标准考试不足以确定猝死原因时,分子调查至关重要。由于不同的遗传条件,分子生物学的专业知识至关重要。验尸方案的差异会影响结果的有效性,标准化是必要的。多学科方法和不同组织类型的分析是至关重要的。
    Sudden unexpected deaths often remain unresolved despite forensic examination, posing challenges for pathologists. Molecular autopsy, through genetic testing, can reveal hidden causes undetectable by standard methods. This review assesses the role of molecular autopsy in clarifying SUD cases, examining its methodology, utility, and effectiveness in autopsy practice. This systematic review followed PRISMA guidelines and was registered with PROSPERO (registration number: CRD42024499832). Searches on PubMed, Scopus, and Web of Science identified English studies (2018-2023) on molecular autopsy in sudden death cases. Data from selected studies were recorded and filtered based on inclusion/exclusion criteria. Descriptive statistics analyzed the study scope, tissue usage, publication countries, and journals. A total of 1759 publications from the past 5 years were found, with 30 duplicates excluded. After detailed consideration, 1645 publications were also excluded, leaving 84 full-text articles for selection. Out of these, 37 full-text articles were chosen for analysis. Different study types were analyzed. Mutations were identified in 17 studies, totaling 47 mutations. Molecular investigations are essential when standard exams fall short in determining sudden death causes. Expertise in molecular biology is crucial due to diverse genetic conditions. Discrepancies in post-mortem protocols affect the validity of results, making standardization necessary. Multidisciplinary approaches and the analysis of different tissue types are vital.
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  • 文章类型: Journal Article
    背景:先天性代谢错误(IEM)是婴儿期或儿童期猝死(SUD)的罕见但潜在可预防的原因。代谢尸检是建立诊断的最终工具。我们对SUD的代谢和分子尸检进行了回顾性审查,并对生化和遗传发现进行了表征。方法对死后代谢调查的回顾性回顾(干血斑酰基肉碱和氨基酸分析,尿液代谢分析,并对2016年10月至2021年12月期间出现SUD的婴儿和儿童进行了75个IEM基因组的下一代测序),这些婴儿和儿童的尸检结果或尸检特征不确定,怀疑我们地区的潜在IEM.对每个病例的临床和尸检结果进行了回顾。结果在整个研究期间,共有43名婴儿和死亡时年龄在0天至10岁之间的儿童被转诊到作者的实验室。诊断为1例阳性的多酰基辅酶A脱氢酶缺乏症。根据其余患者的结果,建立了干血斑点氨基酸和酰基肉碱谱的死后参考间隔。结论我们的研究证实了代谢尸检的重要性以及在这种情况下结合生化和基因检测的优势。
    Background Inborn errors of metabolism (IEM) are collectively rare but potentially preventable causes of sudden unexpected death (SUD) in infancy or childhood, and metabolic autopsy serves as the final tool for establishing the diagnosis. We conducted a retrospective review of the metabolic and molecular autopsy on SUD and characterized the biochemical and genetic findings. Methodology A retrospective review of postmortem metabolic investigations (dried blood spot acylcarnitines and amino acid analysis, urine metabolic profiling where available, and next-generation sequencing on a panel of 75 IEM genes) performed for infants and children who presented with SUD between October 2016 and December 2021 with inconclusive autopsy findings or autopsy features suspicious of underlying IEM in our locality was conducted. Clinical and autopsy findings were reviewed for each case. Results A total of 43 infants and children aged between zero days to 10 years at the time of death were referred to the authors\' laboratories throughout the study period. One positive case of multiple acyl-CoA dehydrogenase deficiency was diagnosed. Postmortem reference intervals for dried blood spot amino acids and acylcarnitines profile were established based on the results from the remaining patients. Conclusions Our study confirmed the importance of metabolic autopsy and the advantages of incorporating biochemical and genetic testing in this setting.
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  • 文章类型: Journal Article
    调查心源性猝死(SCD)的原因总是很困难;事实上,即使在尸检调查期间,与SCD相关的遗传性心脏病也可能是“沉默的”。在这些情况下,重要的是排除其他病因并协助要求进行基因调查。在这里,这篇综述的目的是收集SCD中最有牵连的基因,并产生一个具有一线和二线研究适应症的小组.根据系统评价的首选报告项目(PRISMA)标准,对一般人群中可能导致SCD的遗传疾病进行了系统评价。随后,当尸检结果为阴性或没有获得性心脏病的证据时,我们列出了可能在心源性猝死情况下进行测试的基因。为了使基因检测更具体、更有效,这是有用的,并要求证实尸检结果与分子调查明显在小组提议。一线研究的基因是HCM,MYBPC3,MYH7,TNNT2,TNNI3,而在DCM的情况下,最牵连的基因是LMNA和TTN,在这些CDM的第二行中,可以研究ACTN2、TPM1、C1QPB。在ACM/ARVC的情况下,分子研究包括DSP,DSG2、DSC2、RYR2、PKP2。信道病与以下基因相关:SCN5A,KCNQ1、KCNH2、KCNE1、RYR2。我们的工作强调了基因检测在法医学和临床病理学中的重要性;此外,这不仅有助于帮助病理学家做出诊断,还可以防止后代家庭中的其他SCD病例,并标准化在全球类似病例中进行的分析类型。
    Investigating the causes of Sudden cardiac death (SCD) is always difficult; in fact, genetic cardiac conditions associated with SCD could be \"silent\" even during autopsy investigation. In these cases, it is important to exclude other aetiology and assist to ask for genetic investigations. Herein, the purpose of this review is to collect the most-implicated genes in SCD and generate a panel with indications for first line and second line investigations. A systematic review of genetic disorders that may cause SCD in the general population was carried out according to the Preferred Reporting Item for Systematic Review (PRISMA) standards. We subsequently listed the genes that may be tested in the case of sudden cardiac death when the autopsy results are negative or with no evidence of acquired cardiac conditions. To make genetic tests more specific and efficient, it is useful and demanded to corroborate autopsy findings with the molecular investigation as evident in the panel proposed. The genes for first line investigations are HCM, MYBPC3, MYH7, TNNT2, TNNI3, while in case of DCM, the most implicated genes are LMNA and TTN, and in second line for these CDM, ACTN2, TPM1, C1QPB could be investigated. In cases of ACM/ARVC, the molecular investigation includes DSP, DSG2, DSC2, RYR2, PKP2. The channelopathies are associated with the following genes: SCN5A, KCNQ1, KCNH2, KCNE1, RYR2. Our work underlines the importance of genetic tests in forensic medicine and clinical pathology; moreover, it could be helpful not only to assist the pathologists to reach a diagnosis, but also to prevent other cases of SCD in the family of the descendant and to standardise the type of analysis performed in similar cases worldwide.
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  • 文章类型: Journal Article
    背景:很少有报告描述来自体检医师办公室的死后基因检测结果,或将来自大型队列的尸检证实的表型与基因检测结果相关联。
    目的:报告心肌病和心律失常相关基因检测的结果,以及在美国最大的医学检验员办公室调查的病例的尸检结果。
    方法:回顾了2015年至2022年使用心肌病和心律失常相关基因小组测试的死后病例。使用美国医学遗传学和基因组学学院/分子病理学协会指南对变异致病性进行分类。评估了致病性/可能的致病性变异(P/LPV)与心脏病理学的相关性。
    结果:该队列包括1107名不同年龄和种族的死者。在87例(7.9%)中检测到P/LPV,在心肌病和心律失常基因中有73和14种变异,分别。在437例(39.5%)中检测到不确定意义的变异。心肌病患者的诊断率(P/LPV百分比)(26.1%)明显高于无心肌病患者(P<0.0001)。婴儿的诊断率(0.7%)明显低于老年组(1至74岁,5.7%-25.9%),它们的产量之间没有统计学差异。心脏尸检结果对肥厚型心肌病的诊断率为54.0%,47.1%为心律失常性心肌病,20.0%为心肌纤维化,扩张型心肌病为19.0%,心肌炎为11.3%。大多数P/LPV在MYBPC3,TTN,PKP2,SCN5A,MYH7和FLNC。十个P/LPV是新颖的。
    结论:我们的结果支持对所有年龄的心肌病患者进行死后基因检测的重要性,不足以诊断特定心肌病的心脏病变(例如,心肌纤维化),和心肌炎.联合验尸心脏检查和遗传分析有利于准确确定死亡的根本原因并为家庭成员提供有效的临床护理。
    BACKGROUND: Few reports describe the yield of postmortem genetic testing from medical examiners\' offices or correlate genetic test results with autopsy-confirmed phenotypes from a large cohort.
    OBJECTIVE: To report results from cardiomyopathy- and cardiac arrhythmia-associated genetic testing in conjunction with autopsy findings of cases investigated at the United States\' largest medical examiner office.
    METHODS: Postmortem cases tested from 2015 to 2022 with a cardiomyopathy- and cardiac arrhythmia-associated gene panel were reviewed. American College of Medical Genetics and Genomics/Association for Molecular Pathology guidelines were used to classify variant pathogenicity. Correlations of pathogenic/likely pathogenic variants (P/LPVs) with cardiac pathology were evaluated.
    RESULTS: The cohort included 1107 decedents of diverse ages and ethnicities. P/LPVs were detected in 87 (7.9%) cases, with 73 and 14 variants in cardiomyopathy and cardiac arrhythmia genes, respectively. Variants of uncertain significance were detected in 437 (39.5%) cases. The diagnostic yield (percentage of P/LPV) in decedents with cardiomyopathy (26.1%) was significantly higher than those without (P<.0001). The diagnostic yield was significantly lower in infants (0.7%) than older age groups (ranging from 1 to 74 years old, 5.7%-25.9%), which had no statistical difference between their yields. The diagnostic yields by cardiac autopsy findings were 54.0% for hypertrophic cardiomyopathy, 47.1% for arrhythmogenic cardiomyopathy, 20.0% for myocardial fibrosis, 19.0% for dilated cardiomyopathy, and 11.3% for myocarditis. Most P/LPVs were in MYBPC3, TTN, PKP2, SCN5A, MYH7, and FLNC. Ten P/LPVs were novel.
    CONCLUSIONS: Our results support the importance of performing postmortem genetic testing on decedents of all ages with cardiomyopathy, cardiac lesions insufficient to diagnosis a specific cardiomyopathy (e.g., myocardial fibrosis), and myocarditis. Combined postmortem cardiac examination and genetic analysis are advantageous in accurately determining the underlying cause of death and informing effective clinical care of family members.
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  • 文章类型: Journal Article
    心源性猝死(SCD)被定义为由于快速发生的心脏原因而导致的意外死亡。尽管确定了预防策略,SCD仍然是全球范围内严重的公共卫生问题。占所有死亡人数的15-20%,因此对现代医学来说是一个挑战,尤其是当它影响到年轻人的时候。年轻人心源性猝死影响年龄≤35岁的人群,包括运动员和非运动员,这是由于各种遗传和非遗传原因。验尸后,如果原因不明,它被称为不明原因的突然死亡,通常归因于遗传原因。在这些情况下,分子尸检-验尸基因检测-对于促进诊断和治疗途径和/或监测病例的家庭成员至关重要。这篇综述旨在详细阐述以基因突变为标志的心脏疾病,有必要对死者进行验尸基因调查,以进行准确的诊断,以促进知情的遗传咨询并为案件的家庭成员实施预防策略。
    Sudden cardiac death (SCD) is defined as unexpected death due to a cardiac cause that occurs rapidly. Despite the identification of prevention strategies, SCD remains a serious public health problem worldwide, accounting for 15-20% of all deaths, and is therefore a challenge for modern medicine, especially when it affects young people. Sudden cardiac death in young people affects the population aged ≤ 35 years, including athletes and non-athletes, and it is due to various hereditary and non-hereditary causes. After an autopsy, if the cause remains unknown, it is called sudden unexplained death, often attributable to genetic causes. In these cases, molecular autopsy-post-mortem genetic testing-is essential to facilitate diagnostic and therapeutic pathways and/or the monitoring of family members of the cases. This review aims to elaborate on cardiac disorders marked by genetic mutations, necessitating the post-mortem genetic investigation of the deceased for an accurate diagnosis in order to facilitate informed genetic counseling and to implement preventive strategies for family members of the cases.
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  • 文章类型: Journal Article
    背景:遗传性心肌病(HCM,DCM,ACM)和心脏离子通道病(长QT/Brugada综合征,CPVT)与显著的发病率和死亡率相关;然而,先证者中家族性致病变异的诊断允许随后对其高危亲属进行级联筛查.
    目的:我们调查了2002年至2020年在爱尔兰参加三项心脏遗传学专科服务的患者的心脏基因小组检测的诊断率,并回顾了具有不确定意义的变异。
    结果:回顾820个家庭的834例患者的分子遗传学诊断报告,致病性/可能致病性变异的初始诊断率为237/834名患者(28.4%),增加到276/834患者(33.1%)后,重新评估具有不确定意义的变异病例。总之,42/85例接受VUS检查的患者(49.4%)进行了重新分类,这可能会改变他们的临床管理。女性比男性更容易携带致病性/可能的致病性变异(139/374,37.2%vs137/460,29.8%,分别,p=0.03),在0至<2岁年龄组(6/12,50.0%)和心肌病基因组测试组(13/35,37.1%)中,诊断率最高。MYBPC3/MYH7(87/109,79.8%)和KCNQ1/KCNH2(91/100,91.0%)基因变异是肥厚型心肌病和长QT综合征的主要遗传原因,分别。
    结论:我们的研究强调了对ACMG前遗传变异进行整理和回顾的重要性,以增加遗传检测对遗传性心脏病的诊断实用性。几乎一半的ACMG前VUS患者将其变异重新分类为可能的致病性/可能的良性,这对患者及其家人产生了积极的临床影响。
    BACKGROUND: Inherited cardiomyopathies (HCM, DCM, ACM) and cardiac ion channelopathies (long QT/Brugada syndromes, CPVT) are associated with significant morbidity and mortality; however, diagnosis of a familial pathogenic variant in a proband allows for subsequent cascade screening of their at-risk relatives.
    OBJECTIVE: We investigated the diagnostic yield from cardiac gene panel testing and reviewed variants of uncertain significance from patients attending three specialist cardiogenetics services in Ireland in the years 2002 to 2020.
    RESULTS: Reviewing molecular genetic diagnostic reports of 834 patients from 820 families, the initial diagnostic yield of pathogenic/likely pathogenic variants was 237/834 patients (28.4%), increasing to 276/834 patients (33.1%) following re-evaluation of cases with variant(s) of uncertain significance. Altogether, 42/85 patients with VUS reviewed (49.4%) had a re-classification that could change their clinical management. Females were more likely to carry pathogenic/likely pathogenic variants than males (139/374, 37.2% vs 137/460, 29.8%, respectively, p = 0.03), and the diagnostic yields were highest in the 0 to < 2 years age group (6/12, 50.0%) and amongst those tested for cardiomyopathy gene panels (13/35, 37.1%). Variants in the MYBPC3/MYH7 (87/109, 79.8%) and KCNQ1/KCNH2 (91/100, 91.0%) genes were the predominant genetic causes for hypertrophic cardiomyopathy and long QT syndrome, respectively.
    CONCLUSIONS: Our study highlights the importance of collation and review of pre-ACMG genetic variants to increase diagnostic utility of genetic testing for inherited heart disease. Almost half of patients with pre-ACMG VUS reviewed had their variant re-classified to likely pathogenic/likely benign which resulted in a positive clinical impact for patients and their families.
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  • 文章类型: Journal Article
    年轻人的突然意外死亡(SUDY)对他们的家人来说是一种创伤;然而,目前缺乏与这种疾病相关的遗传变异信息。在猝死的情况下,必须进行死后遗传分析,为亲属提供信息,并允许适当的遗传咨询和临床随访。本研究旨在调查与日本SUDY发生相关的遗传变异,使用下一代测序(NGS)。该研究包括18例SUDY(男性16例,2名女性;年龄15-47岁)接受尸检,包括用于分子分析的NGSDNA测序。从测序面板中总共选择了168个基因,并进行了过滤,在心脏疾病相关基因中鉴定出60种变异。许多病例具有这些遗传变异中的几种,一些病例具有心脏表型。使用NGS鉴定遗传变异体提供了有关猝死致病性的重要信息。
    Sudden unexpected death in the young (SUDY) is a traumatic occurrence for their family; however, information on the genetic variations associated with the condition is currently lacking. It is important to carry out postmortem genetic analyses in cases of sudden death to provide information for relatives and to allow appropriate genetic counselling and clinical follow-up. This study aimed to investigate the genetic variations associated with the occurrence of SUDY in Japan, using next-generation sequencing (NGS). The study included 18 cases of SUDY (16 males, 2 females; age 15-47 years) who underwent autopsy, including NGS DNA sequencing for molecular analysis. A total of 168 genes were selected from the sequencing panel and filtered, resulting in the identification of 60 variants in cardiac disease-related genes. Many of the cases had several of these genetic variants and some cases had a cardiac phenotype. The identification of genetic variants using NGS provides important information regarding the pathogenicity of sudden death.
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  • 文章类型: Review
    背景:心脏猝死(SCD)可能发生在明显健康的个体中,包括运动员。我们报告了验尸基因检测的诊断作用,分子尸检(MA),阐明运动员SCD的原因。
    方法:我们回顾了6860例SCD连续病例的数据库,这些病例转诊到我们的心脏病理中心。所有病例都进行了详细的心脏尸检,748例被认为是运动员。其中,42(6%)用MA(28使用靶向测序,14外显子组测序)。变异体被手动分类为致病性(P),可能致病(LP),使用国际指南的未知意义变体(VUS)。临床信息是从完成详细健康问卷的转诊验尸官那里获得的。
    结果:在42名死者中(平均年龄35岁,98%的男性)接受了MA的调查,尸检与结构正常的心脏(突发性心律失常死亡综合征,SADS)在n=33(78%)例中,其次是心律失常性心肌病(ACM)8例(19%)和特发性左心室纤维化1例(2%)。分别有26人(62%)和16人(38%)在运动和休息时死亡。7例(17%)存在被裁定为临床可操作的变体。在2例ACM中,遗传和表型发现之间存在一致性。在SADS病例中发现的所有变异以前都与信道病无关。在5例SADS中发现了心肌病相关基因的临床可操作变体。
    结论:突然死亡的运动员中MA的产率为17%。在SADS案件中,在心肌病相关基因中发现了临床可操作的变异体,而在通道病相关基因中没有发现.ACM是运动员SCD的常见原因,四分之一的死者在FLNC和TMEM43基因中具有临床可操作的变异。
    OBJECTIVE: Sudden cardiac death (SCD) may occur in apparently healthy individuals, including athletes. The aim was to investigate the diagnostic role of post-mortem genetic testing, molecular autopsy (MA), in elucidating the cause of SCD in athletes.
    RESULTS: We reviewed a database of 6860 consecutive cases of SCD referred to our specialist cardiac pathology centre. All cases underwent detailed cardiac autopsy, and 748 were deemed to be athletes. Of these, 42 (6%) were investigated with MA (28 using a targeted sequencing, 14 exome sequencing). Variants were classified as pathogenic, likely pathogenic, or variant of unknown significance using international guidelines. Clinical information was obtained from referring coroners who completed a detailed health questionnaire. Out of the 42 decedents (average age 35 years old, 98% males) who were investigated with MA, the autopsy was in keeping with a structurally normal heart [sudden arrhythmic death syndrome (SADS)] in n = 33 (78%) cases, followed by arrhythmogenic cardiomyopathy (ACM) in eight (19%) individuals and idiopathic left ventricular fibrosis in one (2%). Death occurred during exercise and at rest in 26 (62%) and 16 (38%) individuals, respectively. Variants that were adjudicated clinically actionable were present in seven cases (17%). There was concordance between the genetic and phenotypic findings in two cases of ACM (in FLNC and TMEM43 genes). None of the variants identified in SADS cases were previously linked to channelopathies. Clinically actionable variants in cardiomyopathy-associated genes were found in five cases of SADS.
    CONCLUSIONS: The yield of MA in athletes who died suddenly is 17%. In SADS cases, clinically actionable variants were found in cardiomyopathy-associated genes and not in channelopathy-associated genes. Arrhythmogenic cardiomyopathy is a common cause of SCD in athletes, and one in four decedents with this condition had a clinically actionable variant in FLNC and TMEM43 genes.
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  • 文章类型: Journal Article
    日本有各种死亡调查系统;然而,外部检查,死后计算机断层扫描,宏观检查,无论使用何种系统,都要进行显微镜检查。这些检查可以揭示形态异常,而非形态学异常的死亡原因可以通过额外的检查来检测。分子尸检和死后遗传分析是重要的额外检查。它们能够检测遗传性心律失常或遗传性代谢疾病,它们是导致猝死的代表性非形态学疾病,尤其是婴儿和年轻人。在这次审查中,我们介绍了来自日本的分子尸检报告,并描述了我们对代表性病例的经验。还回顾了药物相关死亡与遗传变异之间的关系。根据提供的信息,分子尸检有望被用作死亡调查的常规检查,因为它们可以提供拯救新生命的信息。
    Japan has various death investigation systems; however, external examinations, postmortem computed tomography, macroscopic examinations, and microscopic examinations are performed regardless of the system used. These examinations can reveal morphological abnormalities, whereas the cause of death in cases with non-morphological abnormalities can be detected through additional examinations. Molecular autopsy and postmortem genetic analyses are important additional examinations. They are capable of detecting inherited arrhythmias or inherited metabolic diseases, which are representative non-morphological disorders that cause sudden death, especially in infants and young people. In this review, we introduce molecular autopsy reports from Japan and describe our experience with representative cases. The relationships between drug-related deaths and genetic variants are also reviewed. Based on the presented information, molecular autopsy is expected to be used as routine examinations in death investigations because they can provide information to save new lives.
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  • 文章类型: Journal Article
    心肌病的诊断通常依赖于病理学家的主观判断,由于病情的形态学变化和特异性低。这种不确定性可能导致无法解释的心脏猝死(USCD)。提高遗传性心肌病法医学诊断的准确性,我们提出了分子尸检和病理尸检的结合。通过分析16名疑似心肌病的死亡患者,在分子尸检中使用全外显子组测序(WES),并应用联合诊断策略,该研究发现6例患者有致病性或可能的致病性变异。在16个案例中,在3例中证实了心肌病,而3例表现出与之一致的条件。4例数据无定论,心肌病在6年被排除。值得注意的是,鉴定了TTN基因的新变体。这项研究表明,分级诊断策略,结合分子和病理证据,可以提高法医心肌病诊断的准确性。这种方法为精确的法医死因判定提供了一个实用的模型和策略,解决在心肌病病例中仅仅依赖形态学评估的局限性,整合遗传信息以进行更全面的诊断。
    The diagnosis of cardiomyopathy often relies on the subjective judgment of pathologists due to the variety of morphologic changes in the condition and its low specificity. This uncertainty can contribute to unexplained sudden cardiac deaths (USCD). To enhance the accuracy of hereditary cardiomyopathy diagnosis in forensic medicine, we proposed a combination of molecular autopsy and pathologic autopsy. By analyzing 16 deceased patients suspected of cardiomyopathy, using whole exome sequencing (WES) in molecular autopsy, and applying a combined diagnostic strategy, the study found pathogenic or likely pathogenic variants in 6 cases. Out of the 16 cases, cardiomyopathy was confirmed in 3, while 3 exhibited conditions consistent with it. Data for 4 cases was inconclusive, and cardiomyopathy was ruled out in 6. Notably, a novel variant of the TTN gene was identified. This research suggests that a grading diagnostic strategy, combining molecular and pathological evidence, can improve the accuracy of forensic cardiomyopathy diagnosis. This approach provides a practical model and strategy for precise forensic cause-of-death determination, addressing the limitations of relying solely on morphologic assessments in cardiomyopathy cases, and integrating genetic information for a more comprehensive diagnosis.
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