Structural changes

结构变化
  • 文章类型: Journal Article
    β-乳球蛋白(BLG)的结合能力对于递送多酚至关重要,结构变化的影响。高压处理(HPP)有可能改变BLG的结构和聚集,但其对BLG-多酚相互作用的具体影响尚不确定。这项研究使用圆二色光谱和分子动力学模拟来揭示HPP引起的BLG结构变化,由指示聚集的粒度分析支持。七种结构多样的多酚(槲皮素-QR,Hesperetin-HSP,二氢杨梅素-DHM,没食子酸-GA,(-)-表儿茶素-EC,白藜芦醇-RES,和secoisolariciresinol二糖苷-SDG)进行了研究,以使用荧光光谱和分子对接全面分析其结合模式。HPP减少了BLG的有序结构,增加了其聚集。DHM的结合亲和力峰值为400MPa,QR,HSP,GA,和RES,而SDG和EC在大气压和600MPa下表现出最大亲和力,分别。升高的压力增强了BLG-多酚相互作用,特别是在44GLU和160CYS残基处,范德华力支配着束缚自由能。
    The binding capacity of β-Lactoglobulin (BLG) is crucial for delivering polyphenols, influenced by structural changes. High pressure processing (HPP) has the potential to modify BLG\'s structure and aggregation, but its specific impact on BLG-polyphenol interactions is uncertain. This study used circular dichroism spectroscopy and molecular dynamics simulations to reveal HPP-induced structural changes in BLG, supported by particle size analysis indicating aggregation. Seven structurally diverse polyphenols (quercetin-QR, hesperetin-HSP, dihydromyricetin-DHM, gallic acid-GA, (-)-epicatechin-EC, resveratrol-RES, and secoisolariciresinol diglucoside-SDG) were investigated to comprehensively analyze their binding patterns using fluorescence spectroscopy and molecular docking. HPP reduced BLG\'s ordered structure and increased its aggregation. Binding affinities peaked at 400 MPa for DHM, QR, HSP, GA, and RES, while SDG and EC exhibited maximum affinities at atmospheric pressure and 600 MPa, respectively. Elevated pressures enhanced BLG-polyphenol interactions, particularly at residues 44GLU and 160CYS, with van der Waals forces dominating the binding free energy.
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  • 文章类型: Journal Article
    探讨不溶性纤维的形态变化及其对微生物群调节的影响。特别是拟杆菌,在不同的饲料水分水平(E20、E40和E60)下挤出米糠不溶性纤维。理化性质和SEM显示E20表现出最高的持水能力,并显示出最破碎的边缘。E40具有最高的溶胀保持能力,并显示出最大的层状间隙。E60显示出物理化学性质的最小变化,但具有粗糙的表面。发酵48h后,E40显示出最高水平的拟杆菌和SCFA。E20和E60导致拟杆菌丰度的适度增加。SEM显示细菌附着在破碎的边缘,松散的层状间隙,和挤出的不溶性纤维的粗糙表面。结果表明,拟杆菌在挤出处理中获得了竞争优势,从而产生了结构变化。挤压处理可用于产生有利于拟杆菌的特定生态位。
    To investigate the morphological changes of insoluble fiber and their effects on microbiota modulation, particularly Bacteroides, rice bran insoluble fibers were extruded at different feed moisture levels (E20, E40, and E60). The physicochemical properties and SEM revealed that E20 exhibited the highest water holding capacity and displayed the most fragmented edges. E40 had the highest swelling holding capacity and displayed the most lamellar gaps. E60 showed minimal change in physicochemical properties but had a rough surface. After 48h fermentation, E40 showed the highest levels of Bacteroides and SCFAs. E20 and E60 resulted in a modest increase in Bacteroides abundance. SEM showed that bacteria were attached to fragmented edges, loosened lamellar gaps, and rough surfaces of the extruded insoluble fibers. The results suggested that Bacteroides gained a competitive advantage within the extrusion treatment created structural changes. Extrusion treatment can be used to generate specific niches favorable for Bacteroides.
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  • 文章类型: Journal Article
    在本研究中,我们研究了与乳清蛋白浓缩物80(WPC80)和L-抗坏血酸6-棕榈酸酯(LAP)对叶酸(FA)的稳定作用相关的机制。多光谱技术表明,WPC80主要通过疏水相互作用与FA和LAP结合,能量以非辐射形式(FA/LAP)从WPC80转移到FA和LAP;FA/LAP的组合导致WPC80的构象和二级结构含量发生变化,系统的绝对zeta电位增加,以及粒度分布向较小尺寸的偏移。该复合体系表现出增强的抗氧化性能和良好的粘合性能。此外,WPC80提高了FA在不同条件下的储存稳定性。这些结果表明,FA与WPC80和LAP共结合形成的三元复合物是提高FA稳定性的有效途径。
    In the present study, we investigated the mechanisms associated with the stabilizing effects of whey protein concentrate-80 (WPC80) and L-ascorbyl 6-palmitate (LAP) on folic acid (FA). Multispectral techniques show that WPC80 binds to FA and LAP mainly through hydrophobic interactions, and that energy is transferred from WPC80 to FA and LAP in a nonradiative form (FA/LAP); The combination of FA/LAP resulted in a change in the conformation and secondary structure content of WPC80, an increase in the absolute zeta potential of the system, and a shift in the particle size distribution towards smaller sizes. The compound system exhibits strengthened antioxidant properties and favorable binding properties. Besides, WPC80 improves the storage stability of FA under different conditions. These results demonstrated that the ternary complex formed by FA co-binding with WPC80 and LAP is an effective way to improve the stability against of FA.
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  • 文章类型: Journal Article
    微流化处理对初级,次要,研究了大豆分离蛋白(SPI)的三级结构。在控制和不控制温度的情况下处理样品,并在高压(137MPa)下在系统中循环1、3和5次。然后,将处理过的样品冷冻干燥并在水中重构,以检查微流化对两种不同状态的影响:粉末和溶液。关于一级结构,还原条件下的SDS-PAGE分析表明,当暴露于微流化处理时,蛋白质条带保持不变。当控制粉末状态的样品的温度时,注意到β-折叠和无规卷曲的数量显着减少,而α-螺旋含量略有减少。在处理过的样品中观察到的β-折叠的减少和β-转角的增加表明微流化可能导致蛋白质解折叠,打开疏水区域。此外,较低的α-螺旋表明较高的蛋白质灵活性。在水中复原后,仅在α-螺旋中观察到显著差异,β-折叠和β-转角。与三级结构相关,微流化增加了表面疏水性。在所有测试的条件中,控制温度的样品似乎最合适。
    The effect of microfluidization treatment on the primary, secondary, and tertiary structure of soybean protein isolate (SPI) was investigated. The samples were treated with and without controlling the temperature and circulated in the system 1, 3, and 5 times at high pressure (137 MPa). Then, the treated samples were freeze-dried and reconstituted in water to check the impact of the microfluidization on two different states: powder and solution. Regarding the primary structure, the SDS-PAGE analysis under reducing conditions showed that the protein bands remained unchanged when exposed to microfluidization treatment. When the temperature was controlled for the samples in their powder state, a significant decrease in the quantities of β-sheet and random coil and a slight reduction in α-helix content was noticed. The observed decrease in β-sheet and the increase in β-turns in treated samples indicated that microfluidization may lead to protein unfolding, opening the hydrophobic regions. Additionally, a lower amount of α-helix suggests a higher protein flexibility. After reconstitution in water, a significant difference was observed only in α-helix, β-sheet and β-turn. Related to the tertiary structure, microfluidization increases the surface hydrophobicity. Among all the conditions tested, the samples where the temperature is controlled seem the most suitable.
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  • 文章类型: Journal Article
    这项研究调查了辛烯基琥珀酸酐(OSA)-淀粉-脂肪酸(FA)相互作用对结构的影响,高直链淀粉玉米淀粉(HAS)的消化率和释放特性。FTIR和XRD分析表明,HAS和FA之间的疏水相互作用促进了OSA和HAS之间的共价结合。随着FA链长度的增加,复杂指数,替代程度,R1047/1022和OSA-HAS-FA的相对结晶度先升高后降低,而在无限时间内,一阶速率系数和消化百分比表现出相反的趋势。OSA-HAS-FA与12碳FA的结构变化和分子相互作用导致最高的抗性淀粉含量(45.43%)和姜黄素(Cur)的包封率(47.98%)。体外释放试验表明,Cur可以在模拟胃中从OSA-HAS-FA中逐渐释放,肠液和结肠液。结果为OSA接枝的HAS-FA复合物作为结肠特异性功能材料的载体提供了新的见解。
    This study investigated the effects of octenyl succinic anhydride (OSA)-starch-fatty acid (FA) interactions on the structural, digestibility and release characteristics of high amylose corn starch (HAS). FTIR and XRD analysis showed that the hydrophobic interaction between HAS and FA promoted the covalent binding between OSA and HAS. With the increasing of the FA chain length, the complex index, degree of substitution, R1047/1022 and relative crystallinity of OSA-HAS-FA increased first and then decreased, whereas the first-order rate coefficient and percentage of digested in infinite time showed an opposite trend. Structural changes and the molecular interactions of OSA-HAS-FA with 12‑carbon FA resulted in highest resistant starch content (45.43%) and encapsulation efficiency of curcumin (Cur) (47.98%). In vitro release test revealed that Cur could be gradually released from OSA-HAS-FA in simulated gastric, intestinal and colonic fluids. Results provided novel insights into HAS-FA complex grafted with OSA as carrier for colon-specific of functional materials.
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  • 文章类型: Journal Article
    这项工作研究了海藻糖(TH)和焦磷酸钠(SPP)单独和联合使用对90天冷冻储存(-20°C)期间silver鱼糜肌原纤维蛋白(MP)氧化和结构变化的冷冻保护作用。TH联合SPP在预防MP氧化方面明显优于单一TH或SPP(P<0.05),显示较高的SH含量(6.05nmol/mg蛋白质),和较低的羰基(4.24nmol/mg蛋白质)和二酪氨酸含量(1280A.U.)。SDS-PAGE结果表明,TH与SPP组合在抑制蛋白质降解方面与TH和SPP没有显着差异,但在抑制蛋白质交联方面更有效。此外,所有冷冻保护剂都可以稳定二级和三级结构,并抑制MP的展开和聚集,TH和SPP的组合是最好的。值得指出的是,TH与SPP联用对抑制α-螺旋含量的降低和凝胶形成能力具有协同作用,和表面疏水性的增加。总的来说,TH与SPP联用能显著抑制鱼糜在冷冻保存过程中的MP氧化和结构变化,提高其凝胶形成能力。显著优于单一TH或SPP。
    This work investigated the cryoprotective effect of trehalose (TH) and sodium pyrophosphate (SPP) alone and in combination on myofibrillar protein (MP) oxidation and structural changes in silver carp surimi during 90 days of frozen storage (-20 °C). TH combined with SPP was significantly more effective than single TH or SPP in preventing MP oxidation (P < 0.05), showing a higher SH content (6.05 nmol/mg protein), and a lower carbonyl (4.24 nmol/mg protein) and dityrosine content (1280 A.U.). SDS-PAGE results indicated that TH combined with SPP did not differ significantly from TH and SPP in inhibiting protein degradation but was more effective in inhibiting protein crosslinking. Moreover, all cryoprotectants could stabilise the secondary and tertiary structures and inhibit unfolded and aggregation of MP, with the combination of TH and SPP being the best. It\'s worth noting that TH combined with SPP had a synergistic effect on inhibiting the decrease in α-helix content and gel-forming ability, and the increase in surface hydrophobicity. Overall, TH combined with SPP could significantly inhibited MP oxidation and structural changes in surimi during frozen storage and improve the gel-forming ability, which was significantly better than single TH or SPP.
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  • 文章类型: Journal Article
    掺杂在调节和增强有机半导体(OSC)器件的性能中起着至关重要的作用。在这项研究中,强调了掺杂剂在塑造OSC膜的形态和结构中的关键作用,这反过来又深刻地影响了它们的属性。两种掺杂剂,三苯甲基四(五氟苯基)(TrTPFB)和N,四(五氟苯基)硼酸N-二甲基苯胺(DMA-TPFB),检查了它们对聚(3-己基噻吩)(P3HT)和PBBT-2T宿主OSC的掺杂作用。发现尽管TrTPFB表现出更高的掺杂效率,掺杂有DMA-TPFB的OSC实现相当的或甚至增强的电导率。的确,掺杂DMA-TPFB的P3HT的电导率达到67Scm-1以上,这是混合溶液掺杂的P3HT的创纪录值。这可以归因于DMA-TPFB诱导更高程度的结晶度和减少的结构无序。此外,DMA-TPFB对OSC膜形态和结构的有益影响导致掺杂OSC的优异的热电性能。这些发现强调了掺杂剂诱导的形态和结构考虑在增强OSC的膜特性方面的重要性。为优化掺杂剂性能开辟了一条新途径。
    Doping plays a crucial role in modulating and enhancing the performance of organic semiconductor (OSC) devices. In this study, the critical role of dopants is underscored in shaping the morphology and structure of OSC films, which in turn profoundly influences their properties. Two dopants, trityl tetrakis(pentafluorophenyl) (TrTPFB) and N,N-dimethylanilinium tetrakis(pentafluorophenyl)borate (DMA-TPFB), are examined for their doping effects on poly(3-hexylthiophene) (P3HT) and PBBT-2T host OSCs. It is found that although TrTPFB exhibits higher doping efficiency, OSCs doped with DMA-TPFB achieve comparable or even enhanced electrical conductivity. Indeed, the electrical conductivity of DMA-TPFB-doped P3HT reaches over 67 S cm-1, which is a record-high value for mixed-solution-doped P3HT. This can be attributed to DMA-TPFB inducing a higher degree of crystallinity and reduced structural disorder. Moreover, the beneficial impact of DMA-TPFB on the OSC films\' morphology and structure results in superior thermoelectric performance in the doped OSCs. These findings highlight the significance of dopant-induced morphological and structural considerations in enhancing the film characteristics of OSCs, opening up a new avenue for optimization of dopant performance.
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  • 文章类型: Journal Article
    大量使用塑料包装会导致严重的环境污染。在这项研究中,市售塑料包装的表面结构和微生物群落演变[聚乙烯(PE),聚氯乙烯(PVC),聚偏二氯乙烯(PVDC),和聚乳酸(PLA)]在人工湿地(CWs)中进行了研究。结果表明,所有塑料包装的分子量逐渐降低,结晶度熔化,和结晶温度,而表面粗糙度逐渐增加,聚合物分散指数(PDI),微生物定殖CW的羰基指数(CI)和Shannon指数。保鲜膜的老化率依次为:PLA>PVC>PE>PVDC,在CW的同一地点,顺序是:土壤表面>植物根>底土,同样的塑料包装。同一保鲜膜定殖的微生物多样性依次为:植物根>底土>土壤表面。塑料包装上的微生物的香农指数低于土壤中的微生物,表明微生物定植塑料包装的多样性是有限的。此外,塑料表面的微生物群落结构被塑料类型共分化,CW中的放置位置,和老化时间。在PVC和PVDC包裹物表面上发现了明显不同的微生物群落结构,揭示了塑料中的氯限制了微生物的多样性。根瘤菌科和假单胞菌科的未分类成员是塑料包装表面的优势属,这表明它们可能是参与塑料降解过程的微生物。该研究提供了宝贵的观点,以促进对移民的全面了解,命运,以及与湿地微塑料(MPs)相关的环境风险。
    The high use of plastic wraps leads to significant environmental pollution. In this study, the surface structure and microbial community evolution of commercially available plastic wraps [polyethylene (PE), polyvinyl chloride (PVC), polyvinylidene chloride (PVDC), and polylactic acid (PLA)] in constructed wetlands (CWs) were investigated. The results indicated that all plastic wraps gradually decreased in molecular weight, crystallinity, melting, and crystallization temperatures, whereas a gradual increase was observed in the surface roughness, polymer dispersity index (PDI), carbonyl index (CI) and Shannon index of microorganisms colonizing the CWs. The aging rate of the plastic wrap was in the order: PLA > PVC > PE > PVDC, at the same site in the CWs, and it was in the order: soil surface > plant roots > subsoil, for the same plastic wrap. The diversity of microorganisms colonizing the same plastic wrap was in the order: plant roots > subsoil > soil surface. The Shannon indices of microorganisms on plastic wraps were lower than those in the soil, indicating that the diversity of microorganisms colonizing plastic wraps is limited. Additionally, the microbial community structure on the plastic surface was co-differentiated by the plastic type, placement position in the CWs, and aging time. Significantly different microbial community structures were found on the PVC and PVDC wrap surfaces, revealing that the chlorine in plastics limits microbial diversity. Unclassified members of Rhizobiaceae and Pseudomonadaceae were the dominant genera on the surface of the plastic wraps, suggesting that they may be the microorganisms involved in plastic degradation processes. The study provides valuable perspectives to facilitate a comprehensive understanding of the migration, fate, and environmental risks associated with microplastics (MPs) in wetlands.
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  • 文章类型: Journal Article
    酪蛋白(CN)是牛奶中的主要致敏蛋白,导致食物过敏在全球范围内流行。然而,关于结构修饰对CN变应原性的影响的知识仍然有限。在这里,我们制备了三种修饰的CN(mCN),包括十二烷基硫酸钠和二硫苏糖醇诱导的线性CN(LCN),转谷氨酰胺酶交联的CN(TCN),和葡萄糖糖化的CN(GCN)。电泳结果表明mCN之间广泛的蛋白质聚集,导致它们分子量的变化。表面微观结构差异证实了mCN独特的内部和外部结构特征,二级结构的改变,游离氨基酸含量的变化,和功能分子基团的修饰。尽管与LCN相比,TCN和GCN的消化率较低,它们显著抑制Caco-2细胞中IL-8的产生而不显著促进其增殖。此外,GCN显示最弱的诱导LAD2细胞脱粒的能力。尽管TCN的治疗效果,GCN处理的小鼠表现出最显著的过敏反应减弱和显著恢复的Th1/Th2失衡,而LCN给药在细胞和小鼠模型中都会导致严重的过敏性表型和基因型。这项研究强调了线性修饰的有害作用,并强调了糖基化与CN变应原性有关的重要性。
    Casein (CN) is the primary allergenic protein in cow\'s milk, contributing to the worldwide escalating prevalence of food allergies. However, there remains limited knowledge regarding the effect of structural modifications on CN allergenicity. Herein, we prepared three modified CNs (mCN), including sodium dodecyl sulfate and dithiothreitol-induced linear CN (LCN), transglutaminase-cross-linked CN (TCN), and glucose-glycated CN (GCN). The electrophoresis results indicated widespread protein aggregation among mCN, causing variations in their molecular weights. The unique internal and external structural characteristics of mCN were substantiated by disparities in surface microstructure, alterations in the secondary structure, variations in free amino acid contents, and modifications in functional molecular groups. Despite the lower digestibility of TCN and GCN compared to LCN, they significantly suppressed IL-8 production in Caco-2 cells without significantly promoting their proliferation. Moreover, GCN showed the weakest capacity to induce LAD2 cell degranulation. Despite the therapeutic effect of TCN, GCN-treated mice displayed the most prominent attenuation of allergic reactions and a remarkably restored Th1/Th2 imbalance, while LCN administration resulted in severe allergic phenotypes and endotypes in both cellular and murine models. This study highlighted the detrimental effect of linear modifications and underscored the significance of glycation in relation to CN allergenicity.
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  • 文章类型: Journal Article
    背景:胆碱氧化酶,一种黄素蛋白,是一种催化将胆碱转化为甘氨酸甜菜碱的反应的酶。胆碱氧化酶始于1933年。然而,尽管其晶体结构具有悠久的历史和可用性,但尚未探索高温对其结构的影响。胆碱氧化酶及其产物,甘氨酸甜菜碱,拥有跨越多个行业的巨大应用。了解酶的3D结构如何随温度变化而变化,可以开辟新的途径,使其更稳定,更有用。
    方法:本研究论文介绍了在25°C至60°C的温度下,球形A胆碱氧化酶结构变化的计算机研究和分析。在图1中描绘了一个逐步的过程。1.
    结果:来自不同细菌的11个胆碱氧化酶序列与球形节杆菌胆碱氧化酶的多序列比对(MSA)表明,活性位点残基高度保守。对于分子动力学模拟,考虑了具有处于二聚体状态的辅因子黄素腺嘌呤二核苷酸(FAD)1(PDBID:4MJW)1的球形曲霉胆碱氧化酶的可用晶体结构。使用模拟退火选项将系统的温度从25°C逐渐增加到60°C。分析保守的残基,以及涉及黄素腺嘌呤二核苷酸(FAD)结合的残基,底物结合,子状态门控,二聚体形成完成。在高温下,Arg50和Glu63之间链间盐桥的形成是胆碱氧化酶活性位点附近的重要观察结果。
    结论:分子动力学研究表明,温度升高对延伸的黄素腺嘌呤二核苷酸(FAD)结合区具有显着影响。这些变化干扰底物进入酶的活性位点并使酶失活。
    BACKGROUND: Choline oxidase, a flavoprotein, is an enzyme that catalyzes the reaction which converts choline into glycine betaine. Choline oxidase started its journey way back in 1933. However, the impact of the high temperature on its structure has not been explored despite the long history and availability of its crystal structure. Both choline oxidase and its product, glycine betaine, have enormous applications spanning across multiple industries. Understanding how the 3D structure of the enzyme will change with the temperature change can open new ways to make it more stable and useful for industry.
    METHODS: This research paper presents the in-silico study and analysis of the structural changes of A. globiformis choline oxidase at temperatures from 25 °C to 60 °C. A step-wise process is depicted in Fig. 1.
    RESULTS: Multiple sequence alignment (MSA) of 11 choline oxidase sequences from different bacteria vs Arthrobacter globiformis choline oxidase showed that active site residues are highly conserved. The available crystal structure of A. globiformis choline oxidase with cofactor Flavin Adenine Dinucleotide (FAD) in the dimeric state (PDB ID: 4MJW)1 was considered for molecular dynamics simulations. A simulated annealing option was used to gradually increase the temperature of the system from 25 °C to 60 °C. Analysis of the conserved residues, as well as residues involved in Flavin Adenine Dinucleotide (FAD) binding, substrate binding, substate gating, and dimer formationwas done. At high temperatures, the formation of the inter-chain salt bridge between Arg50 and Glu63 was a significant observation near the active site of choline oxidase.
    CONCLUSIONS: Molecular dynamics studies suggest that an increase in temperature has a significant impact on the extended Flavin Adenine Dinucleotide (FAD) binding region. These changes interfere with the entry of substrate to the active site of the enzyme and make the enzyme inactive.
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