Ribonucleoprotein, U5 Small Nuclear

核糖核蛋白,U5 小核
  • 文章类型: Journal Article
    Objective: To explore the antiviral activity of the small-molecule compound AM679 in hepatitis B virus (HBV) replication and infection cell models. Methods: The positive regulatory effect of AM679 on EFTUD2 expression was validated by qPCR and Western blotting. HepAD38 and HepG2-NTCP cells were treated with AM679 (0.5, 1, and 2 nmol/L). Negative control, positive control, and AM679 combined with the entecavir group were set up. HBV DNA intra-and extracellularly, as well as the expression levels of intracellular HBV total RNAs and 3.5kb-RNA changes, were detected with qPCR. Hepatitis B surface antigen (HBsAg) and hepatitis B e antigen (HBeAg) levels were measured in the cell supernatant by an enzyme-linked immunosorbent assay (ELISA). The t-test method was used for the statistical analysis of the mean difference between groups. Results: EFTUD2 mRNA and protein expression levels were significantly increased in HepAD38 and HepG2-NTCP cells following AM679 treatment, with a statistically significant difference (P < 0.001). Intra-and extracellular indicators such as HBV DNA, HBV RNAs, HBV 3.5kb-RNA, HBsAg, and HBeAg were decreased to varying degrees in both cell models, and the decrease in these indicators was more pronounced with the increase in AM679 concentration and prolonged treatment duration, while the combined use of AM679 and entecavir had a more significant antiviral effect. The HBV DNA inhibition rates in the supernatant of HepAD38 cells with the use of 2 nmol/L AM679 were 21% and 48% on days three and nine, respectively. The AM679 combined with the ETV treatment group had the most significant inhibitory effect (62%), with a P < 0.01. More active HBV replication was observed after silencing EFTUD2, while the antiviral activity of AM679 was significantly weakened. Conclusion: AM679 exerts anti-HBV activity in vitro by targeting the regulation of EFTUD2 expression.
    目的: 探究小分子化合物AM679在乙型肝炎病毒(HBV)复制及感染细胞模型中的抗病毒活性。 方法: 通过qPCR及蛋白质免疫印迹法验证AM679对延伸因子结合蛋白 2 (EFTUD2)表达的正向调节作用;用AM679(0.5、1、2 nmol/L)处理HepAD38、HepG2-NTCP细胞,设置阴性对照组、阳性对照组及AM679与恩替卡韦联合用药组。通过qPCR检测细胞内外HBV DNA水平变化,以及细胞内HBV RNAs与3.5kb-RNA的表达水平;通过酶联免疫吸附试验检测细胞上清液中乙型肝炎表面抗原(HBsAg)、乙型肝炎e抗原(HBeAg)水平。组间均数差异采用t检验方法进行统计学分析。 结果: AM679处理后的HepAD38、HepG2-NTCP细胞中EFTUD2 mRNA及蛋白表达水平均明显升高,差异有统计学意义(P < 0.001);在两种细胞模型中,HBV DNA、HBV RNAs、HBV 3.5kb-RNA、HBsAg、HBeAg等细胞内外指标均有不同程度的下降,且随AM679浓度的增加、处理时间的延长,上述指标下降更为明显;联合使用AM679与恩替卡韦则具有更显著的抗病毒效果。HepAD38细胞上清液中,2 nmol/L AM679作用第3、9天对HBV DNA抑制抑制率分别为21%对比48%,而AM679联合ETV治疗组,抑制作用最显著(62%),P值均 < 0.01。沉默EFTUD2后可观察到HBV复制更活跃,AM679的抗病毒活性被显著削弱。 结论: AM679通过靶向调节EFTUD2的表达发挥体外抗HBV活性。.
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  • 文章类型: Case Reports
    背景:伴有小头畸形的下颌面骨发育不良(MFDM,OMIM#610536)是一种罕见的单基因疾病,是由含有2基因的延伸因子TuGTP结合域中的突变引起的(EFTUD2,OMIM*603892)。它的特点是颌面发育不良,小头畸形,畸形的耳朵,腭裂,成长和智力残疾。MFDM由于其与其他颅面骨发育不良综合征的表型重叠,很容易被误诊。MFDM的临床表现在患者中是高度可变的。
    方法:纳入一名颅面畸形患者,并由多学科小组进行评估。为了做出明确的诊断,进行了全外显子组测序,然后通过Sanger测序进行验证。
    结果:患者表现为广泛的面部骨骨发育不全,向上倾斜的睑裂,外耳和中耳畸形,以前未报告的轨道异常,和隐性脊柱裂.一部小说,EFTUD2中的致病性插入突变(c.215_216insT:p.Tyr73Valfs*4)被确定为该疾病的可能原因。
    结论:我们通过在EFTUD2中检测到一种新的致病突变来诊断这种不典型的MFDM病例。我们还观察到以前未报告的特征。这些发现丰富了MFDM的基因型和表型谱。
    BACKGROUND: Mandibulofacial dysostosis with microcephaly (MFDM, OMIM# 610536) is a rare monogenic disease that is caused by a mutation in the elongation factor Tu GTP binding domain containing 2 gene (EFTUD2, OMIM* 603892). It is characterized by mandibulofacial dysplasia, microcephaly, malformed ears, cleft palate, growth and intellectual disability. MFDM can be easily misdiagnosed due to its phenotypic overlap with other craniofacial dysostosis syndromes. The clinical presentation of MFDM is highly variable among patients.
    METHODS: A patient with craniofacial anomalies was enrolled and evaluated by a multidisciplinary team. To make a definitive diagnosis, whole-exome sequencing was performed, followed by validation by Sanger sequencing.
    RESULTS: The patient presented with extensive facial bone dysostosis, upward slanting palpebral fissures, outer and middle ear malformation, a previously unreported orbit anomaly, and spina bifida occulta. A novel, pathogenic insertion mutation (c.215_216insT: p.Tyr73Valfs*4) in EFTUD2 was identified as the likely cause of the disease.
    CONCLUSIONS: We diagnosed this atypical case of MFDM by the detection of a novel pathogenetic mutation in EFTUD2. We also observed previously unreported features. These findings enrich both the genotypic and phenotypic spectrum of MFDM.
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  • 文章类型: Journal Article
    20SU5小核核糖核蛋白颗粒(snRNP)是17亚基RNA-蛋白质复合物,是U4/U6的前体。U5三-snRNP,预催化剪接体的主要组成部分。CD2BP2是20SU5snRNP的标志性蛋白,不存在于成熟的tri-snRNP中。在这里,我们报告了20SU5snRNP的高分辨率低温电子显微镜结构,在tri-snRNP组装期间使用的互斥接口上的发光以及CD2BP2在促进该过程中的作用。
    The 20S U5 small nuclear ribonucleoprotein particle (snRNP) is a 17-subunit RNA-protein complex and a precursor of the U4/U6.U5 tri-snRNP, the major building block of the precatalytic spliceosome. CD2BP2 is a hallmark protein of the 20S U5 snRNP, absent from the mature tri-snRNP. Here we report a high-resolution cryogenic electron microscopy structure of the 20S U5 snRNP, shedding light on the mutually exclusive interfaces utilized during tri-snRNP assembly and the role of the CD2BP2 in facilitating this process.
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  • 文章类型: Journal Article
    剪接体的前mRNA剪接需要其小核核糖核蛋白(snRNP)复合物的生物发生和再循环,在每轮拼接中消耗。人类U5snRNP是剪接体的〜1MDa“心脏”,并通过涉及主要结构重排和专用伴侣CD2BP2和TSSC4的未知机制进行回收。U5snRNP生物发生的后期步骤类似地涉及这些伴侣。在这里,我们报告了四种人U5snRNP-CD2BP2-TSSC4复合物的低温电子显微镜结构,揭示了一系列分子事件如何启动U5snRNP以生成〜2MDaU4/U6。U5三-snRNP,剪接体中最大的构件。
    Pre-mRNA splicing by the spliceosome requires the biogenesis and recycling of its small nuclear ribonucleoprotein (snRNP) complexes, which are consumed in each round of splicing. The human U5 snRNP is the ~1 MDa \'heart\' of the spliceosome and is recycled through an unknown mechanism involving major architectural rearrangements and the dedicated chaperones CD2BP2 and TSSC4. Late steps in U5 snRNP biogenesis similarly involve these chaperones. Here we report cryo-electron microscopy structures of four human U5 snRNP-CD2BP2-TSSC4 complexes, revealing how a series of molecular events primes the U5 snRNP to generate the ~2 MDa U4/U6.U5 tri-snRNP, the largest building block of the spliceosome.
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  • 文章类型: Journal Article
    通过剪接体对新生前mRNA的共转录加工对于调节基因表达和维持基因组完整性至关重要。这里,我们表明,果蝇想象细胞中U5功能性小核核糖核蛋白颗粒(snRNPs)的缺乏导致广泛的转录组重塑和高度诱变R环的积累,引发强烈的应激反应和细胞周期停滞。尽管增殖能力受损,U5snRNP缺陷细胞增加了蛋白质翻译和细胞大小,在通过凋亡逐渐消除之前引起器官内生长失衡。我们确定Xrp1-Irbp18异二聚体是U5snRNP故障下游的转录和细胞应激程序的主要驱动因素。在U5snRNP缺陷细胞中敲除Xrp1或Irbp18减弱了JNK和p53活性,恢复正常的细胞周期进程和生长,并抑制细胞死亡。然而,减少Xrp1-Irbp18,没有挽救拼接缺陷,强调细胞和组织稳态的精确剪接的要求。我们的工作为剪接和DNA损伤反应之间的串扰提供了新的见解,并将Xrp1-Irbp18异二聚体定义为剪接体故障的关键传感器和应激诱导的细胞衰老程序的介体。
    内含子的去除和外显子通过剪接体连接到成熟的mRNA中对于调节基因表达至关重要。同时维护多细胞生物的基因组完整性和增强蛋白质组多样性。因此,剪接体功能障碍与各种疾病和机体衰老有关。我们的研究描述了响应剪接体功能障碍的事件级联。我们确定了两个转录因子作为由剪接体功能障碍触发的应激反应程序的驱动因素,这极大地重塑基因表达以保护组织完整性,并在不可避免的消除之前在受损细胞中诱导衰老样状态。一起,我们强调了剪接体在维持体内平衡中不可或缺的作用,并暗示剪接体功能障碍在与剪接病和衰老的病理机制相关的衰老细胞积累中。
    Co-transcriptional processing of nascent pre-mRNAs by the spliceosome is vital to regulating gene expression and maintaining genome integrity. Here, we show that the deficiency of functional U5 small nuclear ribonucleoprotein particles (snRNPs) in Drosophila imaginal cells causes extensive transcriptome remodeling and accumulation of highly mutagenic R-loops, triggering a robust stress response and cell cycle arrest. Despite compromised proliferative capacity, the U5 snRNP-deficient cells increased protein translation and cell size, causing intra-organ growth disbalance before being gradually eliminated via apoptosis. We identify the Xrp1-Irbp18 heterodimer as the primary driver of transcriptional and cellular stress program downstream of U5 snRNP malfunction. Knockdown of Xrp1 or Irbp18 in U5 snRNP-deficient cells attenuated JNK and p53 activity, restored normal cell cycle progression and growth, and inhibited cell death. Reducing Xrp1-Irbp18, however, did not rescue the splicing defects, highlighting the requirement of accurate splicing for cellular and tissue homeostasis. Our work provides novel insights into the crosstalk between splicing and the DNA damage response and defines the Xrp1-Irbp18 heterodimer as a critical sensor of spliceosome malfunction and mediator of the stress-induced cellular senescence program.
    The removal of introns and the joining of exons into mature mRNA by the spliceosome is crucial in regulating gene expression, simultaneously safeguarding genome integrity and enhancing proteome diversity in multicellular organisms. Spliceosome dysfunction is thus associated with various diseases and organismal aging. Our study describes the cascade of events in response to spliceosome dysfunction. We identified two transcription factors as drivers of a stress response program triggered by spliceosome dysfunction, which dramatically remodel gene expression to protect tissue integrity and induce a senescent-like state in damaged cells prior to their inevitable elimination. Together, we highlight the indispensable role of spliceosomes in maintaining homeostasis and implicate spliceosome dysfunction in senescent cell accumulation associated with the pathomechanisms of spliceopathies and aging.
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  • 文章类型: Journal Article
    目的:前瞻性评估产前超声筛查诊断为小颌畸形的胎儿的预后。
    方法:在2019年1月至2022年12月之间,建立了IFA的正常范围,以评估11至20孕周的中国人群中小颌畸形胎儿的面部轮廓,并描述了胎儿小颌畸形的妊娠结局。收集了这些怀孕的医疗记录,包括家族史,孕产妇人口统计学,超声检查结果,基因检测结果,和妊娠结局。
    结果:超声诊断出25例胎儿小颌畸形,平均IFA值为43.6°。初始扫描中的所有孤立的胎儿小颌畸形病例在以下扫描中是非孤立的。共有78.9%(15/19)的病例有遗传原因确诊,包括12例染色体异常和3例单基因疾病。单基因疾病都是小颌畸形的已知原因,包括2例受SOX9突变影响的钟形发育不良和1例EFTUD2突变的下颌面骨发育不良。最后,19例被终止,1个活产被诊断为皮埃尔·罗宾综合征,5例失访。
    结论:IFA是一个有用的指标,三维超声是胎儿小颌畸形产前诊断的重要支持技术。重复超声监测和基因检测至关重要,推荐CMA,报告正常阵列时进行全外显子组测序。孤立的胎儿小颌畸形可能是单基因疾病的早期表现。
    OBJECTIVE: To prospectively evaluate the prognosis of fetuses diagnosed with micrognathia using prenatal ultrasound screening.
    METHODS: Between January 2019 and December 2022, a normal range of IFA to evaluate the facial profile in fetuses with micrognathia in a Chinese population between 11 and 20 gestational weeks was established, and the pregnancy outcomes of fetal micrognathia were described. The medical records of these pregnancies were collected, including family history, maternal demographics, sonographic findings, genetic testing results, and pregnancy outcomes.
    RESULTS: Ultrasound identified 25 patients with fetal micrognathia, with a mean IFA value of 43.6°. All cases of isolated fetal micrognathia in the initial scans were non-isolated in the following scans. A total of 78.9% (15/19) cases had a genetic cause confirmed, including 12 with chromosomal abnormalities and 3 with monogenic disorders. Monogenic disorders were all known causes of micrognathia, including two cases of campomelic dysplasia affected by SOX9 mutations and one case of mandibulofacial dysostosis with an EFTUD2 mutation. In the end, 19 cases were terminated, 1 live birth was diagnosed as Pierre Robin syndrome, and 5 cases were lost to follow-up.
    CONCLUSIONS: IFA is a useful indicator and three-dimensional ultrasound is a significant support technique for fetal micrognathia prenatal diagnosis. Repeat ultrasound monitoring and genetic testing are crucial, with CMA recommended and Whole exome sequencing performed when normal arrays are reported. Isolated fetal micrognathia may be an early manifestation of monogenic disorders.
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  • 文章类型: Journal Article
    背景:化疗耐药是治疗结直肠癌(CRC)的一个重要障碍,然而,CRC化学耐药的分子基础仍然知之甚少,阻碍新的治疗干预措施的发展。含有TuGTP结合域的延伸因子2(EFTUD2)已成为涉及各种癌症类型的潜在致癌因子,促进肿瘤生长和存活。然而,其在调节CRC细胞对化疗敏感性中的具体作用尚不清楚。
    方法:进行公共数据集分析和内部样本验证,以评估EFTUD2在5-氟尿嘧啶(5-FU)化疗耐药的CRC细胞中的表达以及EFTUD2作为CRC预后指标的潜力。实验都是在体外,包括MTT测定,EdU细胞增殖试验,TUNEL检测,和克隆形成测定和体内,使用细胞来源的异种移植模型,进行以阐明EFTUD2在CRC细胞对5-FU治疗的敏感性中的功能。通过分子对接研究了EFTUD2与致癌转录因子c-MYC相互调控的分子机制,泛素化测定,染色质免疫沉淀(ChIP),双荧光素酶报告分析,和共免疫沉淀(Co-IP)。
    结果:我们发现EFTUD2表达与5-FU耐药呈正相关,病理分级较高,CRC患者预后不良。我们还在体外和体内证明了EFTUD2敲低使CRC细胞对5-FU治疗敏感,而EFTUD2的过度表达削弱了这种敏感性。机械上,我们发现EFTUD2通过阻止其泛素介导的蛋白酶体降解与c-MYC蛋白物理相互作用并稳定c-MYC蛋白。有趣的是,我们发现c-MYC与EFTUD2基因的启动子区直接结合,激活它的转录。利用救援实验,我们进一步证实,EFTUD2对5-FU抗性的影响取决于c-MYC的稳定性。
    结论:我们的发现揭示了一个涉及EFTUD2/c-MYC轴的正反馈环,通过增加EFTUD2转录和稳定c-MYC癌蛋白,阻碍了5-FU化疗在CRC细胞中的疗效。这项研究强调了EFTUD2作为克服CRC患者化疗耐药的有希望的治疗靶点的潜力。
    BACKGROUND: Chemoresistance presents a significant obstacle in the treatment of colorectal cancer (CRC), yet the molecular basis underlying CRC chemoresistance remains poorly understood, impeding the development of new therapeutic interventions. Elongation factor Tu GTP binding domain containing 2 (EFTUD2) has emerged as a potential oncogenic factor implicated in various cancer types, where it fosters tumor growth and survival. However, its specific role in modulating the sensitivity of CRC cells to chemotherapy is still unclear.
    METHODS: Public dataset analysis and in-house sample validation were conducted to assess the expression of EFTUD2 in 5-fluorouracil (5-FU) chemotherapy-resistant CRC cells and the potential of EFTUD2 as a prognostic indicator for CRC. Experiments both in vitro, including MTT assay, EdU cell proliferation assay, TUNEL assay, and clone formation assay and in vivo, using cell-derived xenograft models, were performed to elucidate the function of EFTUD2 in sensitivity of CRC cells to 5-FU treatment. The molecular mechanism on the reciprocal regulation between EFTUD2 and the oncogenic transcription factor c-MYC was investigated through molecular docking, ubiquitination assay, chromatin immunoprecipitation (ChIP), dual luciferase reporter assay, and co-immunoprecipitation (Co-IP).
    RESULTS: We found that EFTUD2 expression was positively correlated with 5-FU resistance, higher pathological grade, and poor prognosis in CRC patients. We also demonstrated both in vitro and in vivo that knockdown of EFTUD2 sensitized CRC cells to 5-FU treatment, whereas overexpression of EFTUD2 impaired such sensitivity. Mechanistically, we uncovered that EFTUD2 physically interacted with and stabilized c-MYC protein by preventing its ubiquitin-mediated proteasomal degradation. Intriguingly, we found that c-MYC directly bound to the promoter region of EFTUD2 gene, activating its transcription. Leveraging rescue experiments, we further confirmed that the effect of EFTUD2 on 5-FU resistance was dependent on c-MYC stabilization.
    CONCLUSIONS: Our findings revealed a positive feedback loop involving an EFTUD2/c-MYC axis that hampers the efficacy of 5-FU chemotherapy in CRC cells by increasing EFTUD2 transcription and stabilizing c-MYC oncoprotein. This study highlights the potential of EFTUD2 as a promising therapeutic target to surmount chemotherapy resistance in CRC patients.
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  • 文章类型: Journal Article
    背景:颌面骨发育不良Guion-Almeida型(MFDGA;OMIM#610536)是一种罕见的常染色体显性遗传障碍,由EFTUD2基因中的杂合致病变异引起。下颌面骨发育不良的特征是核心三联征乳头发育不全,上颌发育不全和耳朵发育不良,所有这些都是由第一和第二分支弓的发育受损引起的。鉴别诊断通常具有挑战性。早期基因诊断非常有用,不仅是为了正确管理颅骨畸形,而且为了早期诊断和治疗与疾病相关的合并症,这大大受益于早期治疗。
    BACKGROUND: Mandibulofacial dysostosis Guion-Almeida Type (MFDGA; OMIM#610536) is a rare autosomal dominant genetic disorder caused by heterozygous pathogenic variants in the EFTUD2 gene. Mandibulofacial dysostoses are characterised by the core triad malar hypoplasia, maxillary hypoplasia and dysplastic ears, all derived by the impaired development of the first and second branchial arches. Differential diagnosis is often challenging. The early genetic diagnosis is extremely useful, not only for the correct management of cranial malformations, but also for the early diagnosis and treatment of the comorbidities associated to the disease, which greatly benefit from early treatment.
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  • 文章类型: Letter
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  • 文章类型: Journal Article
    15q11.2BP1-BP2区域的微缺失,也被称为伯恩赛德-巴特勒敏感区,与发育迟缓的语言能力和运动技能障碍等表型相关,结合行为和情绪问题。15q11.2微缺失区包含四个进化保守和非印迹蛋白编码基因:NIPA1,NIPA2,CYFIP1和TUBGCP5。这种微缺失是一种罕见的拷贝数变异,通常与人类的几种致病状况有关。这项研究的目的是研究与15q11.2BP1-BP2微缺失区中存在的四个基因结合的RNA结合蛋白。这项研究的结果将有助于更好地了解Burnside-Butler综合征的分子复杂性,以及这些相互作用在疾病病因中的可能参与。我们的增强交联和免疫沉淀数据分析结果表明,与15q11.2区域相互作用的大多数RBP都参与相关基因的转录后调控。通过计算机模拟分析发现与该区域结合的RBP,并且通过EMSA和Western印迹联合实验也验证了RBP如FASTKD2和EFTUD2与CYFIP1和TUBGCP5的外显子-内含子连接序列的相互作用。这些蛋白质的外显子-内含子连接结合性质表明它们可能参与剪接过程。这项研究可能有助于理解RBPs与该区域内mRNA的复杂关系,以及它们在正常发育中的功能意义,和缺乏,神经发育障碍。这种理解将有助于制定更好的治疗方法。
    Microdeletion of the 15q11.2 BP1-BP2 region, also known as Burnside-Butler susceptibility region, is associated with phenotypes like delayed developmental language abilities along with motor skill disabilities, combined with behavioral and emotional problems. The 15q11.2 microdeletion region harbors four evolutionarily conserved and non-imprinted protein-coding genes: NIPA1, NIPA2, CYFIP1, and TUBGCP5. This microdeletion is a rare copy number variation frequently associated with several pathogenic conditions in humans. The aim of this study is to investigate the RNA-binding proteins binding with the four genes present in 15q11.2 BP1-BP2 microdeletion region. The results of this study will help to better understand the molecular intricacies of the Burnside-Butler Syndrome and also the possible involvement of these interactions in the disease aetiology. Our results of enhanced crosslinking and immunoprecipitation data analysis indicate that most of the RBPs interacting with the 15q11.2 region are involved in the post-transcriptional regulation of the concerned genes. The RBPs binding to this region are found from the in silico analysis, and the interaction of RBPs like FASTKD2 and EFTUD2 with exon-intron junction sequence of CYFIP1 and TUBGCP5 has also been validated by combined EMSA and western blotting experiment. The exon-intron junction binding nature of these proteins suggests their potential involvement in splicing process. This study may help to understand the intricate relationship of RBPs with mRNAs within this region, along with their functional significance in normal development, and lack thereof, in neurodevelopmental disorders. This understanding will help in the formulation of better therapeutic approaches.
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