Molecular interactions

分子相互作用
  • 文章类型: Journal Article
    调整聚合物的全色发射具有重要的前景。然而,在稀溶液中制备具有颜色可调性的非常规发光聚合物以及理解非共价相互作用与发光行为之间的关系仍然是一个巨大的挑战。我们报告了两个包含四配位硼的发射器(P1和P2)。具有非共轭D-π-A结构的P1,在645nm处表现出红色延迟荧光,聚集体的量子产率为9.15%。值得注意的是,P1的发射波长可以在不同的溶剂下从418到588nm。同样,也可以通过操纵溶剂和荧光团之间的相互作用来调节P2的发射波长。实验表征和理论计算表明,溶剂与荧光团之间的B-N键和电子相互作用显着调节了P1的静电势(ESP)和分子内O···O相互作用的平衡,从而调节了P1的发射波长。此外,这些聚合物在氟离子检测中显示出优异的潜力。这项工作为分子间相互作用对发光特性的复杂影响提供了新的见解。
    Tuning the full-color emission of polymers holds significant promise. However, preparing unconventional luminescence polymers with color-tunability in dilute solution and understanding the relationship between non-covalent interactions and luminescent behavior remains a great challenge. We report two emitters (P1 and P2) incorporating tetracoordinate boron. The P1 with non-conjugated D-π-A structure, exhibited red delayed fluorescence at 645 nm with quantum yield of 9.15% in aggregates. Notably, the emission wavelength of P1 can be tuned from 418 to 588 nm at different solvent. Similarly, the emission wavelength of P2 can also be adjusted by manipulating the interactions between the solvent and fluorophore. Experimental characterization and theoretical calculations indicate that the B←N bond and electronic interactions between solvent and fluorophore significantly regulate the equilibrium the electrostatic potential (ESP) and the intramolecular O···O interactions of P1, thereby modulating its emission wavelength. Additionally, these polymers showed excellent potential in fluoride ions detection. This work provides new insights into the complex effects of intermolecular interactions on luminescent properties.
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  • 文章类型: Journal Article
    焦亡是一种炎性程序性细胞死亡过程,在癌症治疗中起着至关重要的作用。而Gasdermin-D是焦亡执行的关键效应蛋白。这篇综述讨论了Gasdermin-D和一些非编码RNA(lncRNA,miRNA,siRNA)及其在调节焦亡作为抗癌治疗中的潜在应用。相应地,这些ncRNAs与Gasdermin-D表达和功能有关的焦亡途径显著相关。充当竞争内源性RNA(ceRNA),这些ncRNAs可能在分子水平上调节Gasdermin-D,由癌症和肿瘤传播引起的潜在致命细胞死亡。因此,这些相互作用吸引了治疗学,为癌症治疗提供新的途径.它通过讨论ncRNAs作为gasdermin-D调节介质的可能作用来解决这一研究空白。它提出了基于当前研究结果的治疗策略,以确保理想的焦亡和癌细胞死亡之间的互换。
    Pyroptosis is an inflammatory programed cell death process that plays a crucial role in cancer therapeutic, while Gasdermin-D is a critical effector protein for pyroptosis execution. This review discusses the intricate interactions between Gasdermin-D and some non-coding RNAs (lncRNA, miRNA, siRNA) and their potential application in the regulation of pyroptosis as an anticancer therapy. Correspondingly, these ncRNAs significantly implicate in Gasdermin-D expression and function regarding the pyroptosis pathway. Functioning as competing endogenous RNAs (ceRNAs), these ncRNAs might regulate Gasdermin-D at the molecular level, underlying fatal cell death caused by cancer and tumor propagation. Therefore, these interactions appeal to therapeutics, offering new avenues for cancer treatment. It address this research gap by discussing the possible roles of ncRNAs as mediators of gasdermin-D regulation. It suggest therapeutic strategies based on the current research findings to ensure the interchange between the ideal pyroptosis and cancer cell death.
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  • 文章类型: Journal Article
    利用李子籽分离蛋白(PSPI)通过益生菌发酵制备凝胶。评价了发酵时间(0~12h)对PSPI凝胶理化性质的影响。结果表明,PSPI在发酵6小时后开始形成凝胶,pH值从6.6降低到5.2,粒径从10μm增加到40μm,在凝胶过滤高效液相色谱中出现一个保留时间为10分钟的新峰,荧光和扫描电子显微镜观察到聚集和多孔结构的形成。发酵9h的PSPI凝胶显示出最高的粘度(318Pa。s),储能模量(18,000Pa),持水量(37%),和凝胶强度(21.5克),由于更强的分子相互作用,如氢键,静电,疏水相互作用和二硫键。然而,发酵时间超过9小时导致PSPI凝胶的破坏。此外,PSPI约15kDa的亚基在发酵后消失,表明PSPI凝胶的形成是由酸化和部分水解引起的。我们的结果表明,PSPI可以为开发基于植物的凝胶产品提供替代方案。
    The plum seed protein isolates (PSPI) were used to prepare a gel by probiotics fermentation. The effects of fermentation time (from 0 to 12 h) on the physicochemical properties of PSPI gel were evaluated. The results showed that PSPI started to form a gel after 6 h of fermentation, as evidenced by a decrease in pH from 6.6 to 5.2, an increase in particle size from 10 μm to 40 μm, appearance of a new peak with retention time of 10 min in gel filtration high-performance liquid chromatography, and formation of aggregation and porous structure observed by fluorescence and scanning electron microscope. The PSPI gel from 9 h of fermentation exhibited the highest viscosity (318 Pa.s), storage modulus (18,000 Pa), water holding capacity (37 %), and gel strength (21.5 g) due to stronger molecular interactions such as hydrogen bond, electrostatic, hydrophobic interaction and disulfide bond. However, increasing fermentation time over 9 h led to disrupture of PSPI gel. Furthermore, the subunit around 15 kDa of PSPI disappeared after fermentation, indicating that the formation of PSPI gel was induced by both acidification and partial hydrolysis. Our results suggest that PSPI can provide an alternative for developing plant-based gel products.
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  • 文章类型: Journal Article
    阿尔茨海默病(AD)是最常见的痴呆类型;因此,对针对它的治疗药物有很高的需求。在这种情况下,已经进行了广泛的研究以确定药物的分子靶标。AD通过两个主要的病理征象表现:老年斑和神经原纤维缠结,由β淀粉样蛋白(Aβ)和磷酸化tau的积累引起,分别。因此,有关AD病因的分子机制的研究主要集中在Aβ的产生和tau磷酸化,预期会发现影响这些分子过程的信号通路。在过去的二十年里,不仅使用实验模型系统,而且检查人脑的研究已经积累了零碎的证据,表明REELIN信号通路与AD密切相关。这里,我们探讨了REELIN信号通路及其在脑内记忆功能中的作用,并回顾了研究REELIN信号通路与AD病因之间分子联系的研究.这篇综述旨在了解该途径的操纵(激活)如何改善疾病的病因。
    Alzheimer\'s disease (AD) is the most prevalent type of dementia; therefore, there is a high demand for therapeutic medication targeting it. In this context, extensive research has been conducted to identify molecular targets for drugs. AD manifests through two primary pathological signs: senile plaques and neurofibrillary tangles, caused by accumulations of amyloid-beta (Aβ) and phosphorylated tau, respectively. Thus, studies concerning the molecular mechanisms underlying AD etiology have primarily focused on Aβ generation and tau phosphorylation, with the anticipation of uncovering a signaling pathway impacting these molecular processes. Over the past two decades, studies using not only experimental model systems but also examining human brains have accumulated fragmentary evidences suggesting that REELIN signaling pathway is deeply involved in AD. Here, we explore REELIN signaling pathway and its involvement in memory function within the brain and review studies investigating molecular connections between REELIN signaling pathway and AD etiology. This review aims to understand how the manipulation (activation) of this pathway might ameliorate the disease\'s etiology.
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  • 文章类型: Journal Article
    全氟烷基物质(PFAS)提取方法的现状提出了重大挑战,特别是对于具有不同碳链长度的多个PFAS。这项研究引入了一种能源驱动的战略方法,用于筛选深共晶溶剂(DES),以有效地去除各种PFAS,包括全氟烷基羧酸(PFCA),全氟链烷磺酸(PFSA),和全氟烷基酰胺(FAA),来自污染环境(共13种目标化合物)。利用基于能量的筛选,我们从共晶系统的1234种潜在起始材料中鉴定出对PFAS化合物光谱具有高亲和力的DES候选物。主要发现揭示了三丁基氧化膦/2-甲基哌嗪系统的优异去除效率,在实际环境水样中,具有不同碳链长度的各种PFAS超过99%。此外,我们通过从头算分子动力学(AIMD)模拟阐明了DES和PFAS之间的分子相互作用,为治理移除过程的机制提供有价值的见解。萃取机理涉及氢键网络拓扑和结构组织,DES能够提取PFAS,同时保持靶分子的弱聚集状态,并将对DES固有结构的影响降至最低。拟议的系统形成了一个动态的,互补,以及与PFAS的柔性非共价相互作用网络结构。这项研究推进了对DES作为可设计的理解,有效,以及用于PFAS修复的常规溶剂的可持续替代品,为环境化学和绿色技术做出重大贡献。
    The current landscape of perfluoroalkyl substances (PFAS) extraction methodologies presents significant challenges, particularly for multiple PFAS with different carbon chain lengths. This study introduced an energy-driven strategic approach for screening deep eutectic solvents (DESs) to effectively remove a diverse range of PFAS, including perfluoroalkylcarboxylic acids (PFCAs), perfluoroalkanesulfonic acids (PFSAs), and perfluoroalkyl amides (FAAs), from contaminated environments (total 13 target compounds). Utilizing energy-based screening, we identified DES candidates with high affinity for a spectrum of PFAS compounds from 1234 potential starting materials of eutectic systems. Key findings revealed the superior removal efficiency of tributylphosphineoxide/2-methylpiperazine system, exceeding 99 % for various PFAS with different carbon chain lengths in real environmental water samples. Additionally, we elucidated the molecular interactions between DESs and PFAS through ab initio molecular dynamics (AIMD) simulations, providing valuable insights into the mechanisms governing the removal process. The mechanism of extraction involves hydrogen bond network topology and structural organization, with DESs capable of extracting PFAS while maintaining a weakly aggregated state of target molecules and minimizing the impact on the intrinsic structures of DES. The proposed system forms a dynamic, complementary, and flexible non-covalent interaction network structure with PFAS. The study advances the understanding of DES as a designable, effective, and sustainable alternative to conventional solvents for PFAS remediation, offering a significant contribution to environmental chemistry and green technology.
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  • 文章类型: Journal Article
    制定个性化和/或优化的饮食为食品科学领域提供了新的机会,虽然有固有的挑战。基于淀粉的食物是人类日常能量摄入的主要组成部分。除了富含淀粉,淀粉食品还含有多种生物活性物质(例如,多酚,脂质)。包括储存在内的食品加工会影响淀粉和其他食品成分之间的一致性和相互作用,会影响淀粉基食品的质量和营养特性。本文综述了淀粉与其他成分之间的相互作用对食品加工过程中淀粉结构演变的影响。我们从结构-性质关系的角度思考淀粉分子结构的演变如何影响淀粉基食品的质量和营养特性。此外,我们通过合理设计淀粉结构域,制定淀粉食品加工的最佳实践,以保持质量和营养价值。有趣的是,我们发现,抑制晶体结构的形成,同时促进短程有序结构和纳米聚集体的形成,可以同步减缓其消化和回生特性,从而改善淀粉基食品的品质和营养特性。这篇综述为淀粉基食品的新研究人员和食品创新者提供了理论指导。
    Charting out personalized and/or optimized diets offers new opportunities in the field of food science, although with inherent challenges. Starch-based foods are a major component of daily energy intake in humans. In addition to being rich in starch, starchy foods also contain a multitude of bioactive substances (e.g., polyphenols, lipids). Food processing including storage affects the consistency and interactions between starch and other food components, which can affect the quality and nutritional characteristics of starch-based foods. This review describes the effects of interactions between starch and other components on the structural evolution of starch during food processing. We ponder upon how the evolution of starch molecular structure affects the quality and nutritional characteristics of starch-based foods vis-a-vis the structure-property relationship. Furthermore, we formulate best practices in processing starchy food to retain the quality and nutritional value by rationally designing starch structural domains. Interestingly, we found that inhibiting the formation of a crystalline structures while promoting the formation of short-range ordered structures and nano-aggregates can synchronously slow down its digestion and retrogradation properties, thus improving the quality and nutritional characteristics of starch-based food. This review provides theoretical guidelines for new researchers and food innovators of starch-based foods.
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  • 文章类型: Journal Article
    对全基因组关联研究(GWAS)的皮肤恶性黑色素瘤(UKBiobank数据集)和癌症基因组图谱-皮肤皮肤黑色素瘤(TCGA-SKCM)基因表达权重进行全基因组关联研究(TWAS)以鉴定黑色素瘤易感性基因。GWAS包括2465例和449,799例对照,对103例患者进行了基因表达检测。之后,应用基因富集分析来鉴定显著的TWAS关联.从TWAS基因及其相应的miRNA构建黑色素瘤的基因-微小RNA(miRNA)调控网络。最后,对相应的miRNA进行疾病富集分析。TWAS检测到27个与黑色素瘤相关的基因,p值小于0.05(前三个基因是LOC389458(RBAK),C16orf73(MEIOB),和EIF3CL)。联合/条件试验后,一个基因(AMIGO1)被丢弃,产生26个显著基因。基因本体论(GO)生物学过程将扩展基因集(76个基因)与蛋白质K11连接的泛素化和细胞周期相变的调节相关联。K11连接的泛素链调节细胞分裂。有趣的是,延伸的基因集与不同的皮肤癌亚型有关。此外,富集的途径是SARS-CoV-2的nsp1,抑制宿主细胞中的翻译起始,细胞周期,翻译因素,和DNA修复途径完整的网络。基因-miRNA调控网络确定了10个热点基因,前三名:TP53,BRCA1和MDM2;和四个热点miRNA:mir-16,mir-15a,mir-125b,和mir-146a。黑色素瘤是与相应的(106)miRNA相关的十大疾病之一。我们的结果揭示了黑色素瘤的发病机制和生物学上重要的分子相互作用。
    A transcriptome-wide association study (TWAS) was conducted on genome-wide association study (GWAS) summary statistics of malignant melanoma of skin (UK Biobank dataset) and The Cancer Genome Atlas-Skin Cutaneous Melanoma (TCGA-SKCM) gene expression weights to identify melanoma susceptibility genes. The GWAS included 2465 cases and 449,799 controls, while the gene expression testing was conducted on 103 cases. Afterward, a gene enrichment analysis was applied to identify significant TWAS associations. The melanoma\'s gene-microRNA (miRNA) regulatory network was constructed from the TWAS genes and their corresponding miRNAs. At last, a disease enrichment analysis was conducted on the corresponding miRNAs. The TWAS detected 27 genes associated with melanoma with p-values less than 0.05 (the top three genes are LOC389458 (RBAK), C16orf73 (MEIOB), and EIF3CL). After the joint/conditional test, one gene (AMIGO1) was dropped, resulting in 26 significant genes. The Gene Ontology (GO) biological process associated the extended gene set (76 genes) with protein K11-linked ubiquitination and regulation of cell cycle phase transition. K11-linked ubiquitin chains regulate cell division. Interestingly, the extended gene set was related to different skin cancer subtypes. Moreover, the enriched pathways were nsp1 from SARS-CoV-2 that inhibit translation initiation in the host cell, cell cycle, translation factors, and DNA repair pathways full network. The gene-miRNA regulatory network identified 10 hotspot genes with the top three: TP53, BRCA1, and MDM2; and four hotspot miRNAs: mir-16, mir-15a, mir-125b, and mir-146a. Melanoma was among the top ten diseases associated with the corresponding (106) miRNAs. Our results shed light on melanoma pathogenesis and biologically significant molecular interactions.
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  • 文章类型: Journal Article
    注入润滑剂的光滑表面最近已成为有前途的防污涂料,显示出对抗蛋白质的潜力,细胞,和海洋贻贝。然而,缺乏对污染物与这些表面的分子结合行为和相互作用强度的全面了解。在这项工作中,基于含儿茶酚的化学物质(包括3,4-二羟基苯丙氨酸(DOPA)和聚多巴胺(PDA))的贻贝启发化学用于研究基于氟化的光滑表面的防污性能和排斥机制,并使用原子力显微镜(AFM)研究了相关的相互作用机制。分子间力测量和PDA与表面之间的沉积实验揭示了润滑剂膜抑制PDA颗粒与基底接触的能力。此外,使用基于AFM(SM-AFM)的单分子力谱定量研究了单个DOPA部分与注入润滑剂的光滑表面之间的结合机制和键离解能,这表明注入的润滑剂层可以显着影响解离力,并削弱DOPA与全氟化单层表面下方之间的结合强度。这项工作为注入润滑剂的光滑表面对贻贝衍生的粘合剂化学物质的基本防污机理提供了新的纳米力学见解,对于各种生物工程和工程应用的润滑剂注入材料和其他新型防污平台的设计具有重要意义。
    Lubricant-infused slippery surfaces have recently emerged as promising antifouling coatings, showing potential against proteins, cells, and marine mussels. However, a comprehensive understanding of the molecular binding behaviors and interaction strength of foulants to these surfaces is lacking. In this work, mussel-inspired chemistry based on catechol-containing chemicals including 3,4-dihydroxyphenylalanine (DOPA) and polydopamine (PDA) is employed to investigate the antifouling performance and repellence mechanisms of fluorinated-based slippery surface, and the correlated interaction mechanisms are probed using atomic force microscopy (AFM). Intermolecular force measurements and deposition experiments between PDA and the surface reveal the ability of lubricant film to inhibit the contact of PDA particles with the substrate. Moreover, the binding mechanisms and bond dissociation energy between a single DOPA moiety and the lubricant-infused slippery surface are quantitatively investigated employing single-molecule force spectroscopy based on AFM (SM-AFM), which reveal that the infused lubricant layer can remarkably influence the dissociation forces and weaken the binding strength between DOPA and underneath per-fluorinated monolayer surface. This work provides new nanomechanical insights into the fundamental antifouling mechanisms of the lubricant-infused slippery surfaces against mussel-derived adhesive chemicals, with important implications for the design of lubricant-infused materials and other novel antifouling platforms for various bioengineering and engineering applications.
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  • 文章类型: Journal Article
    近年来,基于植物蛋白的肉类类似物受到越来越多的关注。然而,高水分挤压(HME)的过程,他们的准备方法,还没有被彻底探索,特别是在阐明挤出过程中发生的复杂相互作用方面,仍然具有挑战性。这些相互作用来自HME过程中添加的各种成分,包括蛋白质,淀粉,食用牙龈,膳食纤维,脂质,和酶。这些成分在高温的极端条件下经历复杂的构象变化和相互作用,压力,和剪切,最终形成肉类类似物的纤维结构。这篇综述概述了这些成分以及它们在挤出过程中所经历的分子相互作用变化。此外,它深入研究了主要的分子相互作用,如二硫键,氢键,和疏水相互作用,提供详细的见解。
    In recent years, meat analogs based on plant proteins have received increasing attention. However, the process of high moisture extrusion (HME), the method for their preparation, has not been thoroughly explored, particularly in terms of elucidating the complex interactions that occur during extrusion, which remain challenging. These interactions arise from the various ingredients added during HME, including proteins, starches, edible gums, dietary fibers, lipids, and enzymes. These ingredients undergo intricate conformational changes and interactions under extreme conditions of high temperature, pressure, and shear, ultimately forming the fibrous structure of meat analogs. This review offers a overview of these ingredients and the molecular interaction changes they undergo during the extrusion process. Additionally, it delves into the major molecular interactions such as disulfide bonding, hydrogen bonding, and hydrophobic interactions, providing detailed insights into each.
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  • 文章类型: Journal Article
    背景:蛋白质和阴离子辛烯基琥珀酸酐(OSA)-改性淀粉(OSA-淀粉)是食品体系中的常见成分。发现OSA-淀粉与蛋白质之间的相互作用改变了蛋白质-OSA-淀粉复合物的结构和功能特性。在这方面,密切了解乳清分离蛋白(WPI)与OSA-高直链淀粉玉米淀粉(HAS)分子间相互作用的关系,结构变化和流变,研究了WPI-OSA-HAS的消化率和释放特性。
    结果:WPI-OSA-HAS的分子相互作用对于增加表面粗糙度是显著的,溶解度,储能模量和损耗模量,但降低R1047/1022值。对于营养评估,随着抗性淀粉+缓慢消化淀粉含量的增加,平衡水解百分比和动力学常数的降低,WPI-OSA-HAS的抗消化率得到增强。在消化过程中,淀粉颗粒的一部分,OSA组和WPI丢失,但损失低于OSA-HAS。此外,在模拟胃肠液中加载姜黄素的WPI-OSA-HAS的结果表明姜黄素可以逐渐释放以模拟结肠液。值得注意的是,WPI和OSA-HAS之间的相互作用取决于WPI浓度,在35%浓度下获得的分子相互作用更强。
    结论:这些结果提供了有关如何调节流变学的重要信息,通过改变WPI-OSA-HAS的静电相互作用和疏水相互作用来提高WPI-OSA-HAS的抗消化性和释放性能。©2024化学工业学会。
    BACKGROUND: Proteins and anionic octenyl succinic anhydride (OSA)-modified starch (OSA-starch) are common ingredients in food systems. The interactions between OSA-starch and protein are found to alter the structural and functional properties of the protein-OSA-starch complexes. In this regard, the close understanding of the relationship among the molecular interactions between whey protein isolate (WPI) and OSA-high amylose corn starch (HAS), structure changes and rheological, digestibility and release properties of WPI-OSA-HAS was investigated.
    RESULTS: The molecular interactions of WPI-OSA-HAS were significant for increasing the surface rough, solubility, storage modulus and loss modulus, but decreasing the R1047/1022 values. For the nutritional evaluation, the anti-digestibility of WPI-OSA-HAS was enhanced with increased resistant starch + slowly digestible starch contents and decreased equilibrium hydrolysis percentage and kinetic constant. During the digestion, part of the starch granule, OSA groups and WPI were lost, but the loss was lower than for OSA-HAS. Furthermore, the results of curcumin-loaded WPI-OSA-HAS in simulated gastrointestinal fluids demonstrated that curcumin could be gradually released to simulate colonic fluid. Notably, the interaction between WPI and OSA-HAS depended on the WPI concentration with the stronger molecular interactions obtained at 35% concentration.
    CONCLUSIONS: These results provided important information concerning how to adjust the rheological, anti-digestibility and release properties of WPI-OSA-HAS through altering the electrostatic interactions and hydrophobic interactions of WPI-OSA-HAS. © 2024 Society of Chemical Industry.
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