ELECTROPHORESIS

电泳
  • 文章类型: Journal Article
    目标:通过一个大的参数空间,电场可以调整胶体相互作用和力,导致不同的静态和动态结构。到目前为止,然而,场驱动的相互作用仅限于偶极-偶极和流体动力学贡献。尽管如此,在这项工作中,我们建议在适当的条件下,电场也可以诱导基于局部化学场和扩散泳流的相互作用。
    方法:这里,我们提出了一种在电场下生成和测量3D化学梯度的策略。在这种方法中,电极上的法拉第反应会引起全局pH梯度,从而通过电扩散电泳驱动长距离传输。同时,电场通过驱动颗粒的双层远离平衡来诱导局部pH梯度。
    结果:因此,而全局pH梯度导致2D聚焦远离电极,局部pH梯度在第三维度诱导聚集。证据指出了基于扩散电泳的相互作用机制。粒子间相互作用显示出对表面化学的强烈依赖性,zeta电位和颗粒直径。此外,通过调节电场的电压和频率可以容易地调节pH梯度。对于大Péclet数字,我们观察到粒子的集体趋化崩溃。值得注意的是,这种崩塌在粒子表面没有反应的情况下发生。通过混合不同大小的颗粒,我们还证明,通过实验和布朗动力学模拟,非互惠互动的出现,小颗粒更容易被大颗粒吸引。
    OBJECTIVE: Through a large parameter space, electric fields can tune colloidal interactions and forces leading to diverse static and dynamical structures. So far, however, field-driven interactions have been limited to dipole-dipole and hydrodynamic contributions. Nonetheless, in this work, we propose that under the right conditions, electric fields can also induce interactions based on local chemical fields and diffusiophoretic flows.
    METHODS: Herein, we present a strategy to generate and measure 3D chemical gradients under electric fields. In this approach, faradaic reactions at electrodes induce global pH gradients that drive long-range transport through electrodiffusiophoresis. Simultaneously, the electric field induces local pH gradients by driving the particle\'s double layer far from equilibrium.
    RESULTS: As a result, while global pH gradients lead to 2D focusing away from electrodes, local pH gradients induce aggregation in the third dimension. Evidence points to a mechanism of interaction based on diffusiophoresis. Interparticle interactions display a strong dependence on surface chemistry, zeta potential and diameter of particles. Furthermore, pH gradients can be readily tuned by adjusting the voltage and frequency of the electric field. For large Péclet numbers, we observed a collective chemotactic-like collapse of particles. Remarkably, such collapse occurs without reactions at a particle\'s surface. By mixing particles with different sizes, we also demonstrate, through experiments and Brownian dynamics simulations, the emergence of non-reciprocal interactions, where small particles are more drawn towards large ones.
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  • 文章类型: Journal Article
    通过脱脂核桃粉(WF)获得高蛋白核桃粉(HPWF),这是石油工业的副产品。这项研究的目的是HPWF的化学和技术功能表征。Composition,氨基酸含量,蛋白质二级结构,测量蛋白质溶解度和热转变。此外,技术功能特性,乳液活性和稳定性,以及持水和吸油能力,对HPWF进行了评估。此外,通过电泳和共聚焦扫描激光显微镜评估变性条件下蛋白质的分子质量和HPWF的微观结构,分别。HPWF的蛋白质含量为55.4%,总膳食纤维为21.5%。在HPWF氨基酸组成方面,限制性氨基酸是硫酸化的半胱氨酸和蛋氨酸。通过FTIR分析,主要二级结构是β-折叠(49%),其次是α-螺旋(24%);两种结构都被认为是有序的。同样,HPWF可溶性蛋白在碱性pH下增加,并且通过电泳将HPWF蛋白分离为11条条带,分子量范围为97kDa至18kDa。关于技术功能特性,HPWF具有良好的乳液活性(51%)和高的热乳液稳定性(46%)。此外,HPWF保留了571%和242%的水和油重量,分别。最后,显微照片显示了蛋白质结构和纤维碎片的优势,和少量脂质的存在,大部分被捕获。这些结果表明,HPWF是一种有趣的植物性蛋白质来源,核桃粉可用于从非传统来源获得高蛋白成分。
    A high protein walnut flour (HPWF) was obtained by defatting walnut flour (WF), which is a by-product of the oil industry. The objective of this study was the chemical and techno-functional characterization of HPWF. Composition, amino acid content, protein secondary structure, protein solubility and thermal transitions were measured. Besides, the techno-functional properties, emulsion activity and stability, and water holding and oil absorption capacities, of HPWF were evaluated. Also, the molecular mass of proteins under denaturing conditions and the microstructure of HPWF were evaluated by electrophoresis and confocal scanning laser microscopy, respectively. HPWF had 55.4% protein content and 21.5% total dietary fibre. In terms of HPWF amino acid composition, the limiting amino acids were the sulphurated cysteine and methionine. By FTIR analysis, the main secondary structures were β-sheet (49%) followed by α-helix (24%); both structures are considered to be ordered. Likewise, HPWF soluble proteins increased at basic pH and HPWF proteins were separated in 11 bands with molecular masses ranging from 97 kDa to 18 kDa by electrophoresis. With respect to techno-functional properties, HPWF presented good emulsion activity (51%) and high thermal emulsion stability (46%). In addition, HPWF retained 571% and 242% of water and oil by weight, respectively. Finally, the micrograph showed the predominance of protein structures and fibre fragments, and the presence of few lipids mostly trapped. These results showed that HPWF is an interesting source of plant-based proteins and walnut flour can be used to obtain high protein ingredients from non-traditional sources.
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  • 文章类型: Journal Article
    背景:年龄相关性黄斑变性(AMD)是一种常见的眼部病理,主要影响老年人群。AMD的特征是进行性视网膜色素上皮(RPE)细胞变性,主要由抗氧化防御受损引起。AMD的治疗方法之一是将健康的RPE细胞注入视网膜下空间,需要纯净,健康的RPE细胞悬浮液。这项研究旨在电表征RPE细胞,以证明使用模拟通过介电电泳将健康RPE细胞与健康/氧化细胞的混合物分离的可能性。
    方法:将BPEI-1大鼠RPE细胞暴露于过氧化氢以创建体外AMD细胞模型。使用各种方法评估细胞活力,包括显微成像,基于阻抗的实时细胞分析,和MTS测定。健康和氧化的细胞通过记录它们的介电泳光谱来表征,和电池参数(交叉频率,膜电导率和介电常数,和细胞质电导率)进行计算。使用这些参数在理论的基于微流体的介电泳分离芯片上进行了COMSOL模拟。
    结果:增加过氧化氢浓度使第一个交叉频率向较低值移动,细胞膜介电常数逐渐增加。这些变化归因于进行性膜过氧化,当在用抗氧化剂N-乙酰半胱氨酸处理的细胞上测量时,它们减少了。交叉频率的变化足以有效分离健康细胞,如模拟所示。
    结论:该研究表明,介电电泳可用于根据其电特性将健康的RPE细胞与氧化的RPE细胞分离。这种方法可能是一种可行的方法,用于AMD治疗程序的健康RPE细胞悬浮液。
    BACKGROUND: Age-related macular degeneration (AMD) is a prevalent ocular pathology affecting mostly the elderly population. AMD is characterized by a progressive retinal pigment epithelial (RPE) cell degeneration, mainly caused by an impaired antioxidative defense. One of the AMD therapeutic procedures involves injecting healthy RPE cells into the subretinal space, necessitating pure, healthy RPE cell suspensions. This study aims to electrically characterize RPE cells to demonstrate a possibility using simulations to separate healthy RPE cells from a mixture of healthy/oxidized cells by dielectrophoresis.
    METHODS: BPEI-1 rat RPE cells were exposed to hydrogen peroxide to create an in-vitro AMD cellular model. Cell viability was evaluated using various methods, including microscopic imaging, impedance-based real-time cell analysis, and the MTS assay. Healthy and oxidized cells were characterized by recording their dielectrophoretic spectra, and electric cell parameters (crossover frequency, membrane conductivity and permittivity, and cytoplasm conductivity) were computed. A COMSOL simulation was performed on a theoretical microfluidic-based dielectrophoretic separation chip using these parameters.
    RESULTS: Increasing the hydrogen peroxide concentration shifted the first crossover frequency toward lower values, and the cell membrane permittivity progressively increased. These changes were attributed to progressive membrane peroxidation, as they were diminished when measured on cells treated with the antioxidant N-acetylcysteine. The changes in the crossover frequency were sufficient for the efficient separation of healthy cells, as demonstrated by simulations.
    CONCLUSIONS: The study demonstrates that dielectrophoresis can be used to separate healthy RPE cells from oxidized ones based on their electrical properties. This method could be a viable approach for obtaining pure, healthy RPE cell suspensions for AMD therapeutic procedures.
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  • 文章类型: Journal Article
    镰状细胞病(SCD)是一种遗传性疾病,其特征是红细胞形态异常,导致持续性溶血性贫血。因此,SCD对肺血管系统的影响可导致肺动脉高压(PHT),严重的并发症,对SCD患者的健康和生存产生不利影响。SCD患者中PHT的患病率和风险决定因素在不同的地理区域和人群中表现出差异。本研究旨在确定苏丹SCD患者中PHT的患病率并确定相关因素。
    一组31名成人镰状细胞病(SCD)患者,正如血红蛋白电泳所证实的,被招募参加这项横断面研究。包括人口统计在内的全面数据,临床,并收集实验室参数。多普勒超声心动图用于量化肺动脉收缩压(PASP)并评估右心室大小和功能。
    在我们的队列中,PHT的患病率为29%。积极吸烟与PHT显著相关(P=0.042)。而羟基脲治疗对PHT无明显影响(P=0.612)。
    我们的调查显示,在我们的SCD患者人群中,PHT患病率不到三分之一,与先前的研究保持一致。值得注意的是,独立于其他因素,吸烟是SCD患者发生PHT的明显危险因素.这凸显了戒烟作为延缓这种情况发作的干预措施的潜在效用。然而,进一步的研究对于阐明吸烟促进SCD患者PHT发展的机制至关重要.
    UNASSIGNED: Sickle Cell Disease (SCD) is a hereditary condition characterized by aberrant red blood cell morphology, leading to persistent hemolytic anemia. The consequential impact of SCD on the pulmonary vasculature can result in pulmonary hypertension (PHT), a severe complication that detrimentally affects the well-being and survival of individuals with SCD. The prevalence and risk determinants of PHT in SCD patients exhibit variations across diverse geographical regions and populations. This study aims to ascertain the prevalence of PHT among Sudanese SCD patients and identify associated factors.
    UNASSIGNED: A cohort of thirty-one adult sickle cell disease (SCD) patients, as confirmed by hemoglobin electrophoresis, were recruited for participation in this cross-sectional study. Comprehensive data encompassing demographic, clinical, and laboratory parameters were collected. Doppler echocardiography was employed to quantify pulmonary arterial systolic pressure (PASP) and evaluate right ventricular size and function.
    UNASSIGNED: Within our cohort, the prevalence of PHT was 29%. Active cigarette smoking demonstrated a significant association with PHT (P=0.042), while hydroxyurea therapy exhibited no noticeable impact on PHT (P=0.612).
    UNASSIGNED: Our investigation revealed a PHT prevalence of less than one-third in our SCD patient population, aligning with prior studies. Notably, independent of other factors, cigarette smoking emerged as a distinct risk factor for PHT in SCD patients. This highlights the potential utility of smoking cessation as an intervention to delay the onset of this condition. However, further research is imperative to elucidate the mechanisms through which smoking contributes to PHT development in individuals with SCD.
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  • 文章类型: Journal Article
    细胞静息膜电位(RMP)的测量对于理解离子通道及其在多种细胞类型中调节细胞功能的作用很重要。然而,可用于测量RMP的方法(包括膜片钳,微电极,和潜在敏感的荧光团)很昂贵,慢,对操作员偏见开放,并经常导致细胞破坏。我们提出非接触,无标记膜电位估计,使用介电电泳确定细胞质电导率斜率作为介质电导率的函数。通过将其与文献中可用的膜片钳数据进行比较,我们使用七种不同的细胞类型证明了这种方法的准确性,包括原代悬浮细胞(红细胞,血小板),培养的悬浮细胞(THP-1),原代贴壁细胞(软骨细胞,人脐带间充质干细胞),和粘附(HeLa)和悬浮(Jurkat)癌细胞系。离子通道抑制剂的作用分析表明,还可以测量药物(TEA对HeLa的作用;DMSO和神经氨酸酶对红细胞的作用)。与已发布的膜电位值的比较表明,我们的估计值与膜片钳记录的值之间的差异准确到已发布的误差范围内。该方法成本低,非破坏性的,独立于运营商和无标签,并且先前已显示允许在测量后恢复细胞。
    Measurement of cellular resting membrane potential (RMP) is important in understanding ion channels and their role in regulation of cell function across a wide range of cell types. However, methods available for the measurement of RMP (including patch clamp, microelectrodes, and potential-sensitive fluorophores) are expensive, slow, open to operator bias, and often result in cell destruction. We present non-contact, label-free membrane potential estimation which uses dielectrophoresis to determine the cytoplasm conductivity slope as a function of medium conductivity. By comparing this to patch clamp data available in the literature, we have demonstratet the accuracy of this approach using seven different cell types, including primary suspension cells (red blood cells, platelets), cultured suspension cells (THP-1), primary adherent cells (chondrocytes, human umbilical mesenchymal stem cells), and adherent (HeLa) and suspension (Jurkat) cancer cell lines. Analysis of the effect of ion channel inhibitors suggests the effects of pharmaceutical agents (TEA on HeLa; DMSO and neuraminidase on red blood cells) can also be measured. Comparison with published values of membrane potential suggest that the differences between our estimates and values recorded by patch clamp are accurate to within published margins of error. The method is low-cost, non-destructive, operator-independent and label-free, and has previously been shown to allow cells to be recovered after measurement.
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  • 文章类型: Journal Article
    植物细胞壁富含具有高度异质性的多糖。研究细胞壁多糖的组成和结构对于理解植物细胞壁的功能至关重要。糖电泳是一种灵敏、快速、定性、定量分析多糖的方法。该过程包括用适当的裂解酶消化多糖,用高度带电的荧光团标记释放的寡糖的还原末端,通过高压电泳分离聚丙烯酰胺凝胶中标记的寡糖。所产生的荧光可以与寡糖标准品的荧光进行比较来计算。因此,这是一种方便的多糖表征方法,可以在大多数实验室进行。这里,我们介绍了详细的操作步骤和注意事项,有助于研究者快速获得多糖的结构信息。
    The plant cell wall is rich in polysaccharides with high heterogeneity. Investigating the composition and structure of cell wall polysaccharides is crucial for understanding the functionalities of plant cell walls. Carbohydrate electrophoresis is a sensitive and rapid method to analyze polysaccharides qualitatively and quantitatively. The process includes digesting the polysaccharides with appropriate cleavage enzymes, labeling the reducing ends of the released oligosaccharides with a highly charged fluorophore, and separating the labeled oligosaccharides in a polyacrylamide gel via high-voltage electrophoresis. The generated fluorescence can be calculated as compared to that of oligosaccharide standards. Therefore, this is a convenient method for polysaccharide characterization that can be performed in most laboratories. Here, we introduce the detailed operational steps and precautions, which are helpful for researchers to quickly obtain the structural information of polysaccharides.
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  • 文章类型: Journal Article
    目的: 评价电泳评级法及Nano/Qubit浓度比值法在二代测序建库DNA片段化过程中超声打断时间的一致性。 方法: 收集中国医学科学院 北京协和医学院 北京协和医院病理科323例石蜡固定样本。分别通过DNA电泳评级法和Nano/Qubit浓度比值法确定二代测序建库DNA片段化过程中的超声打断时间,利用Kappa一致性检验对二者的一致性进行比较。 结果: Kappa系数表明电泳评级法与Nano/Qubit浓度比值法2种方法评估DNA超声打断时间的一致性良好(Kappa=0.540,P<0.05),但对于低质量标本,缺乏一致性:Nano/Qubit值>7.5(Kappa=0.021,P=0.751)或D级(Kappa=0.040,P=0.146)。 结论: 电泳评级法与Nano/Qubit浓度比值评估二代测序文库DNA片段化时间的一致性良好,可以用Nano/Qubit值大致推算标本的质量,但对于Nano/Qubit值>7.5的标本,应当通过电泳评级法进行评估。.
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  • 文章类型: Journal Article
    纳米孔技术广泛用于DNA测序,RNA,和具有单分子分辨率的肽,用于对单一蛋白质进行指纹识别,和检测代谢物。然而,控制分析物捕获的分子驱动力,它的停留时间,它的逃脱仍未被完全理解。最近开发的纳米孔电渗透阱(NEOtrap)非常适合研究纳米孔传感中的这些基本物理过程,因为它揭示了以前错过的事件。这里,我们使用NEOtrap来定量作用于纳米孔内部蛋白质的电渗和电泳力。我们建立了一个物理模型来描述捕获和逃脱过程,包括捕获的能量潜力。我们用CRISPRdCas9-RNA-DNA复合物的实验数据验证了该模型,在那里,我们系统地筛选了关键的建模参数,如复杂的大小和净电荷。以这种方式调节电泳力和电渗力之间的平衡,我们将动力学参数的趋势与理论模型进行了比较。结果是纳米孔捕获的主要物理过程的全面图片,这有助于指导纳米孔实验中的实验设计和信号解释。
    Nanopore technology is widely used for sequencing DNA, RNA, and peptides with single-molecule resolution, for fingerprinting single proteins, and for detecting metabolites. However, the molecular driving forces controlling the analyte capture, its residence time, and its escape have remained incompletely understood. The recently developed Nanopore Electro-Osmotic trap (NEOtrap) is well fit to study these basic physical processes in nanopore sensing, as it reveals previously missed events. Here, we use the NEOtrap to quantitate the electro-osmotic and electrophoretic forces that act on proteins inside the nanopore. We establish a physical model to describe the capture and escape processes, including the trapping energy potential. We verified the model with experimental data on CRISPR dCas9-RNA-DNA complexes, where we systematically screened crucial modeling parameters such as the size and net charge of the complex. Tuning the balance between electrophoretic and electro-osmotic forces in this way, we compare the trends in the kinetic parameters with our theoretical models. The result is a comprehensive picture of the major physical processes in nanopore trapping, which helps to guide the experiment design and signal interpretation in nanopore experiments.
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  • 文章类型: Journal Article
    实现高水平的纯化和分离是必不可少的,所以客观粒子,比如恶性细胞,有害细菌,和特殊的蛋白质或生物分子,可以满足药物分析中的高精度测量,临床诊断,靶向治疗,食物防御。此外,这可以揭示个体生物变异的内在本质和进化机制。因此,与光学镊子有关的许多技术,微流体,声电泳,和电动力学可以广泛用于实现微米和纳米尺度的颗粒分离。介电泳(DEP)已用于各种操作,浓度,运输,和生物颗粒的分离过程,由于其早期发展,成熟的理论,低成本,和高吞吐量。尽管许多评论已经讨论了DEP技术的生物学应用,在文献中,对微米级和纳米级颗粒分离特征的全面描述较少。因此,这篇综述总结了粒子分离的现状,关注相关技术的发展和创新,包括理论模拟,微通道结构,电极材料,模式及其布局。此外,还提供了结合使用DEP与其他技术的分离应用的简要概述。最后,结论,未来的指导方针,并强调了潜在晋升的建议。
    It is indispensable to realize the high level of purification and separation, so that objective particles, such as malignant cells, harmful bacteria, and special proteins or biological molecules, could satisfy the high precise measurement in the pharmaceutical analysis, clinical diagnosis, targeted therapy, and food defense. In addition, this could reveal the intrinsic nature and evolution mechanisms of individual biological variations. Consequently, many techniques related to optical tweezers, microfluidics, acoustophoresis, and electrokinetics can be broadly used to achieve micro- and nano-scale particle separations. Dielectrophoresis (DEP) has been used for various manipulation, concentration, transport, and separation processes of biological particles owing to its early development, mature theory, low cost, and high throughput. Although numerous reviews have discussed the biological applications of DEP techniques, comprehensive descriptions of micro- and nano-scale particle separations feature less frequently in the literature. Therefore, this review summarizes the current state of particle separation attention to relevant technological developments and innovation, including theoretical simulation, microchannel structure, electrode material, pattern and its layout. Moreover, a brief overview of separation applications using DEP in combination with other technologies is also provided. Finally, conclusions, future guidelines, and suggestions for potential promotion are highlighted.
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  • 文章类型: Journal Article
    在一些寡聚蛋白质中发现了亚基交换,暗示其寡聚结构的短期解离,需要对四级结构在寡聚蛋白质稳定性和功能中的作用有新的认识。这里我们展示了pH值的影响,蛋白质浓度,和尿素对GroES七聚体(GroES7)亚基交换效率的影响。将等摩尔量的野生型(WT)GroES7及其用碘乙酸(97-羧甲基半胱氨酸或CMC-GroES7)修饰的Ala97Cys突变体的混合物在各种条件下孵育,并在聚丙烯酰胺凝胶中进行等电聚焦(IEF)。对于每个样本,有八个考马斯染色的电泳带显示出不同的电荷,这些电荷来自不同数量的包含的突变亚基,每个都带有额外的负电荷。这些条带的强度用于分析蛋白质亚基交换。使用横向尿素梯度凝胶电泳(TUGGE)评估蛋白质稳定性。在pH8.0时,对应于WT-GroES7和CMC-GroES7的初始条带的强度以(23±2)分钟的半衰期降低。交换随着pH的降低而降低,并且在pH5.2时似乎受到强烈阻碍,这是由于具有pK〜6.3的基团的质子化作用,从而稳定了蛋白质的四级结构。pH增加引起的蛋白质四级结构的不稳定,蛋白质浓度降低,或尿素加速GroES亚基交换。这项研究可以可视化寡聚蛋白质中的亚基交换,并证实其与蛋白质四级结构的稳定性直接相关。
    The discovery of a subunit exchange in some oligomeric proteins, implying short-term dissociation of their oligomeric structure, requires new insights into the role of the quaternary structure in oligomeric protein stability and function. Here we demonstrate the effect of pH, protein concentration, and urea on the efficiency of GroES heptamer (GroES7) subunit exchange. A mixture of equimolar amounts of wild-type (WT) GroES7 and its Ala97Cys mutant modified with iodoacetic acid (97-carboxymethyl cysteine or CMC-GroES7) was incubated in various conditions and subjected to isoelectric focusing (IEF) in polyacrylamide gel. For each sample, there are eight Coomassie-stained electrophoretic bands showing different charges that result from a different number of included mutant subunits, each carrying an additional negative charge. The intensities of these bands serve to analyze the protein subunit exchange. The protein stability is evaluated using the transverse urea gradient gel electrophoresis (TUGGE). At pH 8.0, the intensities of the initial bands corresponding to WT-GroES7 and CMC-GroES7 are decreased with a half-time of (23 ± 2) min. The exchange decreases with decreasing pH and seems to be strongly hindered at pH 5.2 due to the protonation of groups with pK ∼ 6.3, which stabilizes the protein quaternary structure. The destabilization of the protein quaternary structure caused by increased pH, decreased protein concentration, or urea accelerates the GroES subunit exchange. This study allows visualizing the subunit exchange in oligomeric proteins and confirms its direct connection with the stability of the protein quaternary structure.
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