AFLP

AFLP
  • 文章类型: Case Reports
    孢子丝菌病是由土壤中常见的双形孢子丝菌引起的全球分布的皮下真菌病,苔藓,和腐烂的植物物质。淋巴皮肤表现,历史上与职业活动和皂虫传播有关,最近观察到也通过动物接触发生,尤其是在巴西。我们描述了一例罕见的淋巴皮肤孢子丝菌病,同时伴有肺部并发症,这是由于刮伤了南部的三带状Armadillo引起的。Tolypeutesmatacus,主要居住在南美洲中部地区的干旱森林中。使用多重定量聚合酶链反应(qPCR)的形态确定了病原为S.schenckiis.str。,而扩增片段长度多态性(AFLP)分析揭示了一种在巴西中西部流行的新型基因型。患者接受伊曲康唑(200毫克/天)治疗两个月,导致皮肤和肺部症状的实质性临床改善。这个案例强调了动物介导的传播在孢子丝菌病流行病学中的关键作用。特别是在有不同物种的区域内。该病例的异常流行病学和遗传特征强调了在非典型孢子丝菌病表现中需要增强意识和诊断警惕。
    Sporotrichosis is a globally distributed subcutaneous mycosis caused by dimorphic Sporothrix species commonly found in soil, mosses, and decaying plant matter. The lymphocutaneous manifestation, historically associated with occupational activities and sapronotic transmission, has recently been observed to also occur through animal contact, particularly notable in Brazil. We describe a rare case of lymphocutaneous sporotrichosis with simultaneous pulmonary complications resulting from the scratching of a southern three-banded armadillo, Tolypeutes matacus, primarily inhabiting the arid forests of South America\'s central region. Speciation using multiplex quantitative polymerase chain reaction (qPCR) established the etiological agent as S. schenckii s. str., while amplified fragment length polymorphism (AFLP) analysis unveiled a novel genotype circulating in the Midwest of Brazil. The patient received treatment with itraconazole (200 mg/day) for two months, leading to substantial clinical improvement of cutaneous and pulmonary symptoms. This case highlights the critical role of animal-mediated transmission in sporotrichosis epidemiology, particularly within regions with diverse armadillo species. The unusual epidemiology and genetic characteristics of this case emphasize the need for enhanced awareness and diagnostic vigilance in atypical sporotrichosis presentations.
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  • 文章类型: Journal Article
    汉坦病毒和登革热病毒感染导致引起经济和公共卫生问题的疾病。急性汉坦病毒感染可导致与其他地方病(包括登革热和钩端螺旋体病)相似的临床出血体征。
    使用妊娠登革热和汉坦病毒病患者的回顾性病例分析,并在怀孕期间提供临床报告和兼容的临床实验室信息,我们报告了加勒比地区孕妇中登革热和汉坦病毒感染的第一个证据以及一例登革热和汉坦病毒双重感染病例.通过酶联免疫吸附测定(ELISA)和非结构蛋白1(NS1)进行DENV和汉坦病毒感染假型病灶减少中和试验(pFRNT)的实验室检测,ELISA和免疫层析(ICG)试纸条。
    确定了4例急性DENV感染的孕妇;然而,4例病例中只有1例(25%)有详细的病历,可以提取临床数据.确定了6例汉坦病毒感染的孕妇,其妊娠期为36至39周;报告的患者在住院和感染之前均未出现先前的妊娠并发症。在随后诊断为妊娠肝炎的6例(AST读数)中的3例中观察到急性肝损伤,并观察到足月和早产的不同临床结果。
    虽然在怀孕期间汉坦病毒感染很少见,应考虑与发热的鉴别诊断,肾脏受累,肝脏受累,登革热和钩端螺旋体病等临床类似疾病流行地区的出血症状和血小板减少症。亮点首例记录的孕妇汉坦病毒和登革热共感染病例。加勒比地区孕妇临床汉坦病毒感染的第一份详细报告。加勒比海地区孕妇临床登革热感染的首次发表报告。汉坦病毒感染后可能的妊娠并发症。早产和低出生体重。加勒比海人群汉坦病毒感染的临床过程。
    UNASSIGNED: Hantavirus and dengue virus infections lead to diseases causing economic and public health concerns. Acute hantavirus infections can lead to similar clinical haemorrhagic signs as other endemic diseases including dengue and leptospirosis.
    UNASSIGNED: Using a retrospective case analysis of pregnant dengue and hantavirus disease patients with clinical reports and compatible clinical laboratory information during pregnancy, we report the first evidence of dengue and hantavirus infections and a case of dual dengue and hantavirus infection among pregnant women in the Caribbean. Laboratory testing by enzyme-linked immunosorbent assay (ELISA) and non-structural protein 1 (NS1) for DENV and for hantavirus infection pseudotype focus reduction neutralisation tests (pFRNT), ELISA and immunochromatographic (ICG) strips.
    UNASSIGNED: Four pregnant cases with acute DENV infections were identified; however, only one out of the four cases (25%) had a detailed medical record to permit abstraction of clinical data. Six hantavirus infected pregnant cases were identified with gestation periods ranged from 36 to 39 weeks; none of the reported patients exhibited previous pregnancy complications prior to hospitalisation and infection. Acute liver damage was observed in three of the six cases (AST readings) who were subsequently diagnosed with hepatitis in pregnancy and variable clinical outcomes were observed with term and pre-term deliveries.
    UNASSIGNED: Whilst hantavirus infection in pregnancy is rare, consideration should be given to differential diagnosis with fever, kidney involvement, liver involvement, haemorrhagic symptoms and thrombocytopenia in endemic areas with clinically similar diseases such as dengue and leptospirosis.HighlightsFirst recorded case of hantavirus and dengue co-infection in a pregnant woman.First detailed report of clinical hantavirus infection in pregnant women in the Caribbean.First published report of clinical dengue infection in pregnant woman in the Caribbean.Possible complications of pregnancy following hantavirus infection.Pre-term birth and low birth weights.Clinical course of hantavirus infection in a Caribbean population.
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  • 文章类型: Journal Article
    褐腐病,由Moniliniaspp引起的。,对全球梨果和核果作物构成重大威胁,在收获前和收获后阶段造成巨大的经济损失。果莫尼氏菌,M.laxa,和果果分枝杆菌被确定为负责褐腐病的关键因子。在这项研究中,我们采用扩增片段长度多态性(AFLP)方法评估了86株Moniliniaspp的遗传多样性。从韩国主要的核果种植地区分离。具体来说,菌株是从忠清收集的,江原,京流,庆尚,全罗省(-do)。应变特性的比较分析,例如隔离位置,寄主植物,以及对化学杀菌剂的反应,进行了。使用20对引物的AFLP系统发育分类显示存在三个不同的群体,全罗省的菌株一直以高频率形成一个单独的组。此外,通过AFLP模式将果蝇分为三组。主坐标分析和PERMANOVA用于比较应变信息,如起源,host,和杀菌剂的敏感性,根据地理起源和寄主植物揭示了AFLP的重要分区模式。这项研究代表了AFLP方法的利用,以调查果聚糖分离株之间的遗传变异,强调持续监测和管理褐腐病原体变异的重要性。
    Brown rot disease, caused by Monilinia spp., poses a significant threat to pome and stone fruit crops globally, resulting in substantial economic losses during pre- and post-harvest stages. Monilinia fructigena, M. laxa, and M. fructicola are identified as the key agents responsible for brown rot disease. In this study, we employed the amplified fragment length polymorphism (AFLP) method to assess the genetic diversity of 86 strains of Monilinia spp. isolated from major stone fruit cultivation regions in South Korea. Specifically, strains were collected from Chungcheong, Gangwon, Gyeonggi, Gyeongsang, and Jeolla provinces (-do). A comparative analysis of strain characteristics, such as isolation locations, host plants, and responses to chemical fungicides, was conducted. AFLP phylogenetic classification using 20 primer pairs revealed the presence of three distinct groups, with strains from Jeolla province consistently forming a separate group at a high frequency. Furthermore, M. fructicola was divided into three groups by the AFLP pattern. Principal coordinate analysis and PERMANOVA were applied to compare strain information, such as origin, host, and fungicide sensitivity, revealing significant partition patterns for AFLP according to geographic origin and host plants. This study represents the utilization of AFLP methodology to investigate the genetic variability among M. fructicol isolates, highlighting the importance of continuous monitoring and management of variations in the brown rot pathogen.
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  • 文章类型: Case Reports
    妊娠急性脂肪肝(AFLP)是一种罕见的,可能致命的产科急诊。由于其非特异性体征和症状,在诊断和治疗方面往往存在延迟,这与病态并发症和高死亡率有关.我们报告了一例30岁的女性妊娠3para2在妊娠32周时出现恶心和呕吐两周,瘙痒三天,上腹部疼痛一天。HELLP(溶血,肝酶升高,和低血小板)综合征/产科胆汁淤积/AFLP。尽管管理迅速,她的产后并发了急性肝性脑病,肝肾关闭,胰腺炎,凝血病,产后出血,和大的腹壁血肿。高度怀疑,及时交货,先进的关键支持,多学科团队参与导致患者成功的胎儿结局。
    Acute fatty liver of pregnancy (AFLP) is a rare, potentially fatal obstetric emergency. Due to its nonspecific signs and symptoms, there is often a delay in diagnosis and management which is associated with morbid complications and high mortality. We report a case of a 30-year-old female gravida 3 para 2 at 32 weeks gestation who presented with nausea and vomiting for two weeks, pruritis for three days, and upper abdomen pain for a day. A clinical diagnosis of HELLP (hemolysis, elevated liver enzymes, and low platelets) syndrome/obstetric cholestasis/AFLP was made. Despite prompt management, her postpartum period was complicated by acute hepatic encephalopathy, hepatorenal shutdown, pancreatitis, coagulopathy, postpartum hemorrhage, and large abdominal wall hematoma. A high index of suspicion, prompt delivery, advanced critical support, and multidisciplinary team involvement led to successful fetomaternal outcomes in the patient.
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  • 文章类型: Journal Article
    全球农业农药暴露导致生物多样性丧失,即使在低于法定限制的超低浓度下。毒物在如此低浓度下的作用机制尚不清楚,特别是与它们在不同生物学水平上的繁殖有关。在这项研究中,我们展示,第一次,从基因到社区层面的级联效应。在基因层面,农业农药暴露导致田间收集的Gammaruspulex的遗传多样性降低,欧洲主要的淡水甲壳类动物。此外,我们确定了与适应农药污染相关的等位基因。在个人层面,这种对农药的遗传适应与较低的繁殖力有关,表明相关的健身费用。在社区层面,农药和竞争者的共同作用导致易感大型无脊椎动物与gammarids竞争的农药总数和丰度下降。种间竞争的减少为适应农药的G.pulex在受污染地区控制大型无脊椎动物群落提供了优势,尽管由于适应而降低了健身。这些过程证明了复杂的级联效应,也说明了生物系统在组织层面的弹性和适应性,以应对不断变化的环境的挑战。
    Global pesticide exposure in agriculture leads to biodiversity loss, even at ultra-low concentrations below the legal limits. The mechanisms by which the effects of toxicants act at such low concentrations are still unclear, particularly in relation to their propagation across the different biological levels. In this study, we demonstrate, for the first time, a cascade of effects from the gene to the community level. At the gene level, agricultural pesticide exposure resulted in reduced genetic diversity of field-collected Gammarus pulex, a dominant freshwater crustacean in Europe. Additionally, we identified alleles associated with adaptations to pesticide contamination. At the individual level, this genetic adaptation to pesticides was linked to a lower fecundity, indicating related fitness costs. At the community level, the combined effect of pesticides and competitors caused a decline in the overall number and abundance of pesticides susceptible macroinvertebrate competing with gammarids. The resulting reduction in interspecific competition provided an advantage for pesticide-adapted G. pulex to dominate macroinvertebrate communities in contaminated areas, despite their reduced fitness due to adaptation. These processes demonstrate the complex cascade of effects, and also illustrate the resilience and adaptability of biological systems across organisational levels to meet the challenges of a changing environment.
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  • 文章类型: Journal Article
    本研究旨在表征300个气单胞菌属。从32种不同物种的123种观赏鱼中分离出的菌株,皮肤损伤,和/或眼部病变。在300个菌株中,53.0%的人被鉴定为A.veronii,41.3%为嗜水气单胞菌,和5.7%为鱼腥草。在研究的六个毒力基因中,最常见的是行为(90.3%)和aer(79.3%)。超过50%的嗜水气单胞菌菌株对所有研究的基因均为阳性。共鉴定出30个毒力谱,确定的五个主要概况包括75%的菌株。只有五个菌株对所有基因均为阴性,并被鉴定为A.caviae和A.veronii。对234个菌株进行了抗菌药物敏感性分析,磺胺类药物的耐药率超过50%。主要观察到头孢菌素的易感性,氨基糖苷类,氯霉素和哌拉西林他唑巴坦.在82.5%的研究菌株中检测到多药耐药性,包括具有100%多药耐药性的A.cavia,和具有90.9%多药耐药性的嗜水菌。SE-AFLP分析产生了66个基因型的嗜水气单胞菌,118基因型的A.veronii,和14个基因型的鱼腥草,证明了维龙氏A和鱼腥草的异质性更大。然而,基因型与菌株起源或毒力和抗性谱之间未观察到直接相关。
    This study aimed to characterize 300 Aeromonas spp. strains isolated from 123 ornamental fish of 32 different species presenting with septicemia, skin lesions, and/or eye lesions. Within the 300 strains, 53.0% were identified as A. veronii, 41.3% as A. hydrophila, and 5.7% as A. caviae. Among the six virulence genes investigated, the most frequent were act (90.3%) and aer (79.3%). More than 50% of A. hydrophila strains were positive for all the studied genes. A total of 30 virulence profiles were identified, with the five main profiles identified comprising 75% of strains. Only five strains were negative for all genes and were identified as A. caviae and A. veronii. The antimicrobial susceptibility profile was performed for 234 strains, with sulfonamides presenting more than 50% of the resistance rates. Susceptibility was observed mainly for cephalosporins, aminoglycosides, chloramphenicol and piperacillin-tazobactam. Multidrug resistance was detected in 82.5% of the studied strains, including A. caviae with 100% multidrug resistance, and A. hydrophila with 90.9% multidrug resistance. The SE-AFLP analysis resulted in 66 genotypes of A. hydrophila, 118 genotypes of A. veronii, and 14 genotypes of A. caviae, demonstrating the greater heterogeneity of A. veronii and A. caviae. However, no direct correlation was observed between the genotypes and the strains\' origins or virulence and resistance profiles.
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  • 文章类型: Journal Article
    犬小孢子菌被认为是与猫科动物和犬科动物的癣相关的常见皮肤癣菌。在本研究中,我们对n=548只猫科动物和犬科动物进行了可能的分离。猫和狗的分离率为70.27%(52/74)和1.68%(8/474),分别和波斯猫被发现高度易感犬M.canis感染。对菌株的磷脂酶产量进行了评估,脂肪酶,过氧化氢酶,和溶血及其在35℃下生长的能力。所有菌株均被鉴定为过氧化氢酶的低生产者,n=17个菌株表现出高的耐热性。特比萘芬被发现是最有效的抗真菌药物和氟康唑是最不有效的,在体外。AFLP分析显示犬M.a的三种基因型,其中15个子簇显示≥90%的相似性,7个子簇显示100%的相似性。然而,表型特征不能根据AFLP谱进行归属.
    Microsporum canis is considered the common dermatophyte agent associated with ringworm in felines and canines. In the present study, we sampled n = 548 felines and canines for the probable isolation of M. canis. The rate of isolation from the cats and dogs was 70.27 % (52/74) and 1.68 % (8/474), respectively and Persian cats were found to be highly susceptible to M. canis infection. The strains were evaluated for their production of phospholipase, lipase, catalase, and hemolysis and their ability to grow at 35 ℃. All the strains were identified as low producers of catalase and n = 17 strains exhibited high thermotolerance ability. Terbinafine was found to be the most effective antifungal drug and fluconazole was the least effective, in vitro. AFLP analysis revealed three genotypes of M. canis with 15 sub-clusters showing ≥ 90 % similarity and 7 sub-clusters exhibiting 100 % similarity. However, the phenotypic characters cannot be attributed based on the AFLP profiles.
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  • 文章类型: Journal Article
    念珠菌的感染比例,近似梭菌复合体的成员,近年来在全球范围内有所增加,和医院爆发已经在几个国家报告。本研究旨在建立基于微卫星位点的分型方法,该方法能够有效区分拟态梭菌分离株。分析三个参考念珠菌基因组序列以鉴定重复基因座。选择含有超过8个双或更多个核苷酸重复的DNA序列。最初总共确定了51个基因座,和基因座特异性引物被设计和测试与20个流行病学无关的分离株。四个位点具有优越的重现性,特异性,并确定了分子分型的分辨率,和综合鉴别力(DP,基于20个流行病学无关的分离株),这四个基因座为1.0。通过持续测试三个菌株,每个菌株一式三份,证明了可重复性,和稳定性,通过测试10个连续段落来证明。然后,我们从中国医院侵袭性真菌监测网研究中收集了48株正骨梭菌非重复临床分离株,以比较基于微卫星的分型与内部转录间隔区(ITS)和扩增片段长度多态性(AFLP)分型分析的DP,使用ATCC96139作为参考菌株。这49个分离株被细分为12个微卫星类型(COMT1-12),六种AFLP类型,和三种ITS类型,虽然所有具有相同COMT的分离株都属于一致的AFLP和ITS类型,证明了我们微卫星型方法的高DP。根据我们的结果,在中国发现COMT12是主要类型,COMT5是第二大的,是导致医院爆发的原因。这种微卫星型方法是区分拟态梭菌的有价值的工具,对于流行病学研究确定菌株相关性和监测传播至关重要。
    The infection proportion of Candida orthopsilosis, a member of the C. parapsilosis complex, has increased globally in recent years, and nosocomial outbreaks have been reported in several countries. This study aimed to establish microsatellite loci-based typing method that was able to effectively distinguish among C. orthopsilosis isolates. Three reference C. orthopsilosis genome sequences were analyzed to identify repeat loci. DNA sequences containing over eight bi- or more nucleotide repeats were selected. A total of 51 loci were initially identified, and locus-specific primers were designed and tested with 20 epidemiologically unrelated isolates. Four loci with excellent reproducibility, specificity, and resolution for molecular typing purposes were identified, and the combined discriminatory power (DP, based on 20 epidemiologically unrelated isolates) of these four loci was 1.0. Reproducibility was demonstrated by consistently testing three strains each in triplicate, and stability, demonstrated by testing 10 successive passages. Then, we collected 48 C. orthopsilosis non-duplicate clinical isolates from the China Hospital Invasive Fungal Surveillance Net study to compare the DP of the microsatellite-based typing with internal transcribed spacer (ITS) and amplified fragment length polymorphism (AFLP) typing analyses, using ATCC 96139 as a reference strain. These 49 isolates were subdivided into 12 microsatellite types (COMT1-12), six AFLP types, and three ITS types, while all the isolates with the same COMT belonged to consistent AFLP and ITS type, demonstrating the high DP of our microsatellite-type method. According to our results, COMT12 was found to be the predominant type in China, and COMT5 was the second largest and responsible for causing a nosocomial outbreak. This microsatellite-type method is a valuable tool for the differentiation of C. orthopsilosis and could be vital for epidemiological studies to determine strain relatedness and monitor transmission.
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  • 文章类型: Journal Article
    奇瓦瓦沙漠的生物地理历史十分复杂,受众多生理事件和气候变化的驱动。这种动态的历史将影响该地区的动植物,包括沙漠口袋地鼠,Geomysarenarius,奇瓦瓦沙漠北部特有的一种地下啮齿动物。沙地仅限于沙质土壤,被认为具有分离的分布。识别两个亚种:G.a.arenarius和G.a.brevirostris.我们使用多基因座核(扩增的片段长度多态性)和线粒体DNA(ND2)序列数据来揭示G.arenarius种群内部和种群之间的遗传多样性模式。我们评估了遗传模式与传统上接受的亚种边界的对应关系,绘制潜在合适土壤的分布图,以确定要分散的障碍或走廊,并指导未来的调查工作,提供了可用于识别不同人群的证据,和种群内量化的遗传多样性。这两个数据集在很大程度上是一致的,并证明了遗传差异的分层模式。最大的差异与两个公认的亚种一致。对潜在可居住土壤的绘图表明,可能存在分散障碍,这导致了地理分布和地区的异同格局。可能被G.arenarius占用,但尚未记录。因为沙马被限制在含沙量高的土壤中,这些可居住的土壤在该物种占据的区域内是分离的,影响土壤沉积和通货紧缩的历史因素可能导致了观察到的遗传差异模式。南方亚种种群内的遗传多样性较高(G.Procedures.arenarius)与G.a.brevirostris.这可能是由于在G.a.由于更多的食物供应(当前或历史上),竞技场或更高的密度-两者都可以实现更高的有效人口规模。
    The biogeographic history of the Chihuahuan Desert is complex, driven by numerous physiographic events and climatic changes. This dynamic history would have influenced the flora and fauna of the region including the desert pocket gopher, Geomys arenarius, a subterranean rodent endemic to the northern Chihuahuan Desert. G. arenarius is restricted to sandy soils and are considered to have a disjunct distribution. Two subspecies are recognized: G. a. arenarius and G. a. brevirostris. We used multilocus nuclear (amplified fragment length polymorphisms) and mitochondrial DNA (ND2) sequence data to uncover patterns of genetic diversity within and among populations of G. arenarius. We evaluated correspondence of genetic patterns to traditionally accepted subspecies boundaries, mapped the distribution of potentially suitable soils to identify barriers or corridors to dispersal and to guide future survey efforts, provided evidence that could be used to recognize distinct population segments, and quantified genetic diversity within populations. Both datasets were largely concordant and demonstrated hierarchical patterns of genetic divergence. The greatest divergence was consistent with the two recognized subspecies. Mapping of potentially habitable soils revealed likely barriers to dispersal contributing to the allopatric pattern of geographic distribution and areas, which may be occupied by G. arenarius but not yet documented. Because G. arenarius is restricted to soils with high sand content, and these habitable soils are disjunct within the region occupied by this species, historical factors that impacted soil deposition and deflation likely contributed to the observed patterns of genetic divergence. Genetic diversity was higher within populations of the southern subspecies (G. a. arenarius) compared to G. a. brevirostris. This may be due to a greater availability of continuous suitable soils within the range of G. a. arenarius or higher density due to greater food availability (currently or historically)-both of which could allow for a higher effective population size.
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