AFLP

AFLP
  • 文章类型: Case Reports
    孢子丝菌病是由土壤中常见的双形孢子丝菌引起的全球分布的皮下真菌病,苔藓,和腐烂的植物物质。淋巴皮肤表现,历史上与职业活动和皂虫传播有关,最近观察到也通过动物接触发生,尤其是在巴西。我们描述了一例罕见的淋巴皮肤孢子丝菌病,同时伴有肺部并发症,这是由于刮伤了南部的三带状Armadillo引起的。Tolypeutesmatacus,主要居住在南美洲中部地区的干旱森林中。使用多重定量聚合酶链反应(qPCR)的形态确定了病原为S.schenckiis.str。,而扩增片段长度多态性(AFLP)分析揭示了一种在巴西中西部流行的新型基因型。患者接受伊曲康唑(200毫克/天)治疗两个月,导致皮肤和肺部症状的实质性临床改善。这个案例强调了动物介导的传播在孢子丝菌病流行病学中的关键作用。特别是在有不同物种的区域内。该病例的异常流行病学和遗传特征强调了在非典型孢子丝菌病表现中需要增强意识和诊断警惕。
    Sporotrichosis is a globally distributed subcutaneous mycosis caused by dimorphic Sporothrix species commonly found in soil, mosses, and decaying plant matter. The lymphocutaneous manifestation, historically associated with occupational activities and sapronotic transmission, has recently been observed to also occur through animal contact, particularly notable in Brazil. We describe a rare case of lymphocutaneous sporotrichosis with simultaneous pulmonary complications resulting from the scratching of a southern three-banded armadillo, Tolypeutes matacus, primarily inhabiting the arid forests of South America\'s central region. Speciation using multiplex quantitative polymerase chain reaction (qPCR) established the etiological agent as S. schenckii s. str., while amplified fragment length polymorphism (AFLP) analysis unveiled a novel genotype circulating in the Midwest of Brazil. The patient received treatment with itraconazole (200 mg/day) for two months, leading to substantial clinical improvement of cutaneous and pulmonary symptoms. This case highlights the critical role of animal-mediated transmission in sporotrichosis epidemiology, particularly within regions with diverse armadillo species. The unusual epidemiology and genetic characteristics of this case emphasize the need for enhanced awareness and diagnostic vigilance in atypical sporotrichosis presentations.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    汉坦病毒和登革热病毒感染导致引起经济和公共卫生问题的疾病。急性汉坦病毒感染可导致与其他地方病(包括登革热和钩端螺旋体病)相似的临床出血体征。
    使用妊娠登革热和汉坦病毒病患者的回顾性病例分析,并在怀孕期间提供临床报告和兼容的临床实验室信息,我们报告了加勒比地区孕妇中登革热和汉坦病毒感染的第一个证据以及一例登革热和汉坦病毒双重感染病例.通过酶联免疫吸附测定(ELISA)和非结构蛋白1(NS1)进行DENV和汉坦病毒感染假型病灶减少中和试验(pFRNT)的实验室检测,ELISA和免疫层析(ICG)试纸条。
    确定了4例急性DENV感染的孕妇;然而,4例病例中只有1例(25%)有详细的病历,可以提取临床数据.确定了6例汉坦病毒感染的孕妇,其妊娠期为36至39周;报告的患者在住院和感染之前均未出现先前的妊娠并发症。在随后诊断为妊娠肝炎的6例(AST读数)中的3例中观察到急性肝损伤,并观察到足月和早产的不同临床结果。
    虽然在怀孕期间汉坦病毒感染很少见,应考虑与发热的鉴别诊断,肾脏受累,肝脏受累,登革热和钩端螺旋体病等临床类似疾病流行地区的出血症状和血小板减少症。亮点首例记录的孕妇汉坦病毒和登革热共感染病例。加勒比地区孕妇临床汉坦病毒感染的第一份详细报告。加勒比海地区孕妇临床登革热感染的首次发表报告。汉坦病毒感染后可能的妊娠并发症。早产和低出生体重。加勒比海人群汉坦病毒感染的临床过程。
    UNASSIGNED: Hantavirus and dengue virus infections lead to diseases causing economic and public health concerns. Acute hantavirus infections can lead to similar clinical haemorrhagic signs as other endemic diseases including dengue and leptospirosis.
    UNASSIGNED: Using a retrospective case analysis of pregnant dengue and hantavirus disease patients with clinical reports and compatible clinical laboratory information during pregnancy, we report the first evidence of dengue and hantavirus infections and a case of dual dengue and hantavirus infection among pregnant women in the Caribbean. Laboratory testing by enzyme-linked immunosorbent assay (ELISA) and non-structural protein 1 (NS1) for DENV and for hantavirus infection pseudotype focus reduction neutralisation tests (pFRNT), ELISA and immunochromatographic (ICG) strips.
    UNASSIGNED: Four pregnant cases with acute DENV infections were identified; however, only one out of the four cases (25%) had a detailed medical record to permit abstraction of clinical data. Six hantavirus infected pregnant cases were identified with gestation periods ranged from 36 to 39 weeks; none of the reported patients exhibited previous pregnancy complications prior to hospitalisation and infection. Acute liver damage was observed in three of the six cases (AST readings) who were subsequently diagnosed with hepatitis in pregnancy and variable clinical outcomes were observed with term and pre-term deliveries.
    UNASSIGNED: Whilst hantavirus infection in pregnancy is rare, consideration should be given to differential diagnosis with fever, kidney involvement, liver involvement, haemorrhagic symptoms and thrombocytopenia in endemic areas with clinically similar diseases such as dengue and leptospirosis.HighlightsFirst recorded case of hantavirus and dengue co-infection in a pregnant woman.First detailed report of clinical hantavirus infection in pregnant women in the Caribbean.First published report of clinical dengue infection in pregnant woman in the Caribbean.Possible complications of pregnancy following hantavirus infection.Pre-term birth and low birth weights.Clinical course of hantavirus infection in a Caribbean population.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Case Reports
    妊娠急性脂肪肝(AFLP)是一种罕见的,可能致命的产科急诊。由于其非特异性体征和症状,在诊断和治疗方面往往存在延迟,这与病态并发症和高死亡率有关.我们报告了一例30岁的女性妊娠3para2在妊娠32周时出现恶心和呕吐两周,瘙痒三天,上腹部疼痛一天。HELLP(溶血,肝酶升高,和低血小板)综合征/产科胆汁淤积/AFLP。尽管管理迅速,她的产后并发了急性肝性脑病,肝肾关闭,胰腺炎,凝血病,产后出血,和大的腹壁血肿。高度怀疑,及时交货,先进的关键支持,多学科团队参与导致患者成功的胎儿结局。
    Acute fatty liver of pregnancy (AFLP) is a rare, potentially fatal obstetric emergency. Due to its nonspecific signs and symptoms, there is often a delay in diagnosis and management which is associated with morbid complications and high mortality. We report a case of a 30-year-old female gravida 3 para 2 at 32 weeks gestation who presented with nausea and vomiting for two weeks, pruritis for three days, and upper abdomen pain for a day. A clinical diagnosis of HELLP (hemolysis, elevated liver enzymes, and low platelets) syndrome/obstetric cholestasis/AFLP was made. Despite prompt management, her postpartum period was complicated by acute hepatic encephalopathy, hepatorenal shutdown, pancreatitis, coagulopathy, postpartum hemorrhage, and large abdominal wall hematoma. A high index of suspicion, prompt delivery, advanced critical support, and multidisciplinary team involvement led to successful fetomaternal outcomes in the patient.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    当稀有物种经历遗传同化并被其丰富的同源物入侵时,自然渗入会引起负面影响。中国五花子和Q.kerrii(Cyclobalanopsis亚属)是印度支那地区的一对密切相关的物种。该地区已报道了这两种物种的形态中间体。在这项研究中,我们用AFLP,SSR和两个关键叶片形态诊断性状,研究了两个Q.austrocochinensis群体,中国的两个纯Q.kerrii和两个假定的杂种种群。使用贝叶斯聚类程序STRUCTURE和NewHybrids检查了单个混合物的比率,没有先验的物种分配。总的来说,我们获得了151个SSR等位基因和781个AFLP标记多态性位点。SSR和AFLP推断的种群分化与公认的物种边界无关。贝叶斯混合分析和主坐标分析确定的杂种和回交个体多于种群中的形态中间体。SSR推断了Q的广泛遗传同化。西双班纳自然保护区(XSBN)核心区的种群D2除外。然而,AFLP比SSR识别更多的Q。使用NewHybrids对AFLP数据的分析表明,这些杂交的个体很少F2,并且主要与两个亲本物种回交。所有这些证据表明在XSBN形成了两个物种共存的混合群。AFLP和SSR都认识到,XSBN(D2)的核心保护区具有很高的Q.赤藓纯种和独特的种质资源。该物种的海南种群和XSBN的其他亚群可能已经失去了遗传完整性。我们的结果表明,在受干扰的接触区域,Q.austrocochinensis和Q.kerrii之间存在明显的遗传分化。结合遗传和形态学分析的结果,亚群D2的保护应优先考虑。保护和恢复热带山沟雨林的完整性是成功保护Q的重要长期目标。精细尺度的景观可能在塑造杂交的空间格局中起着至关重要的作用。需要进一步的研究来评估这些模式和动态。
    Natural introgression can cause negative effects where rare species experience genetic assimilation and invade by their abundant congeners. Quercus austrocochinchinensis and Q. kerrii (subgenus Cyclobalanopsis) are a pair of closely related species in the Indo-China area. Morphological intermediates of the two species have been reported in this region. In this study, we used AFLP, SSR and two key leaf morphological diagnostic traits to study the two Q. austrocochinchinensis populations, two pure Q. kerrii and two putative hybrid populations in China. Rates of individual admixture were examined using the Bayesian clustering programs STRUCTURE and NewHybrids, with no a priori species assignment. In total, we obtained 151 SSR alleles and 781 polymorphic loci of AFLP markers. Population differentiation inferred by SSR and AFLP was incoherent with recognized species boundaries. Bayesian admixture analyses and principal coordinate analysis identified more hybrids and backcrossed individuals than morphological intermediates in the populations. SSR inferred a wide genetic assimilation in Q. austrocochinchinensis, except for subpopulation D2 in the core area of Xi-Shuang-Ban-Na Nature Reserve (XSBN). However, AFLP recognized more Q. austrocochinchinensis purebreds than SSR. Analysis using NewHybrids on AFLP data indicated that these hybridized individuals were few F2 and predominantly backcrosses with both parental species. All these evidences indicate the formation of a hybrid swarm at XSBN where the two species co-exist. Both AFLP and SSR recognized that the core protected area of XSBN (D2) has a high percentage of Q. austrocochinchinensis purebreds and a unique germplasm. The Hainan population and the other subpopulations of XSBN of the species might have lost their genetic integrity. Our results revealed a clear genetic differentiation in the populations and subpopulations of Q. austrocochinchinensis and ongoing introgression between Q. austrocochinchinensis and Q. kerrii at the disturbed contact areas. Combining the results from genetic and morphological analyses, the conservation of subpopulation D2 should be prioritized. Conservation and restoration of the integrity of tropical ravine rainforest is an important long-term goal for the successful conservation of Q. austrocochinchinensis. The fine-scale landscape might play an essential role in shaping the spatial patterns of hybridization. Further studies are needed to evaluate these patterns and dynamics.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    Aechmea亚属Ortgiesia包括约。分布在巴西的20种,阿根廷,巴拉圭,乌拉圭,巴西大西洋雨林的多样性中心。我们基于扩增片段长度多态性(AFLP)检查了Ortgiesia的种间关系。对属于14种Ortgiesia的96种种质进行了采样,并用11种AFLP引物组合进行基因分型。邻居连接(NJ)树描绘了Aechmea亚属Ortgiesia中的两个主要遗传组,和四个小组。NJ树显示出短的内部分支,表明Ortgiesia物种之间的总体遗传差异与最近辐射的Bromelioideae亚科的预期相同。我们的结果表明,杂交和/或不完整的谱系分类可能阻碍了Aechmea亚属Ortgiesia的种间关系的重建。花瓣颜色的映射(黄色,蓝色,粉色,或白色),花序类型(简单或复合),和花序形状(椭圆形,亚圆柱形,圆柱状,或锥体)针对NJ树表明,由于同质,这些特征在Aechmea亚属Ortgiesia中的分类学用途有限。对Ortgiesia当前分布的分析确定了巴西大西洋雨林的南部地区,在南纬26°和27°之间,作为亚属多样性的中心。
    Aechmea subgenus Ortgiesia comprises ca. 20 species distributed in Brazil, Argentina, Paraguay, and Uruguay, with a center of diversity in the Brazilian Atlantic rainforest. We examined interspecific relationships of Ortgiesia based on Amplified Fragment Length Polymorphisms (AFLP). Ninety-six accessions belonging to 14 species of Ortgiesia were sampled, and genotyped with 11 AFLP primer combinations. The neighbor joining (NJ) tree depicted two main genetic groups within Aechmea subgenus Ortgiesia, and four subgroups. The NJ tree showed short internal branches, indicating an overall shallow genetic divergence among Ortgiesia species as expected for the recently radiated subfamily Bromelioideae. Our results suggest that hybridization and/or incomplete lineage sorting may have hampered the reconstruction of interspecific relationships in Aechmea subgenus Ortgiesia. The mapping of petal color (yellow, blue, pink, or white), inflorescence type (simple or compound), and inflorescence shape (ellipsoid, subcylindric, cylindric, or pyramidal) against the NJ tree indicated that these characters are of limited taxonomic use in Aechmea subgenus Ortgiesia due to homoplasy. An analysis of the current distribution of Ortgiesia identified the southern region of the Brazilian Atlantic rainforest, between latitudes of 26° and 27°S, as the center of diversity for the subgenus.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    Arbutus unedo L. is an evergreen shrub with a circum-Mediterranean distribution that also reaches the Eurosiberian region in northern Iberia, Atlantic France, and a disjunct population in southern Ireland. Due to the variety of climatic conditions across its distribution range, the populations of A. unedo were expected to display local adaptation. Conversely, common garden experiments revealed that diverse genotypes from a range of provenances produce similar phenotypes through adaptive plasticity, suggesting the action of stabilizing selection across its climatically heterogeneous range. Nonetheless, since a uniform response might also result from extensive gene flow, we have inferred the population structure of A. unedo and assessed whether its extended and largely one-dimensional range influences gene flow with the help of AFLP genotypes for 491 individuals from 19 populations covering the whole range of the species. As we had anticipated, gene flow is restricted in A. unedo, providing further support to the hypothesis that stabilizing selection is the most likely explanation for the homogeneous phenotypes along the range. The Euro-Siberian populations were not particularly isolated from the Mediterranean. Instead, there was a distinct genetic divide between the populations around the Mediterranean Sea and those sampled along Atlantic coasts from northern Africa up to Ireland. This genetic structure suggests the action of historic rather than biogeographic factors as it seems consistent with a scenario of independent glacial refugia in the Atlantic and Mediterranean portions of the range of A. unedo. Genetic exchange was likewise restricted within each set of populations. Nevertheless, isolation-by-distance (IBD) was stronger, and F ST increased faster with distance, along the Atlantic, suggesting that gene flow might be larger among Mediterranean populations. Genetic diversity was significantly lower in NW Iberia and Ireland than in other populations whereas Ireland was more closely related to populations in NW Iberia than to a population in Atlantic France, suggesting a postglacial stepping-stone colonization of the Atlantic coast. Altogether, our results show that stabilizing selection is able to homogenize the phenotypic response even when population structure is strong, gene flow is constrained, and the phylogeographic past is complex.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Sci-hub)

  • 文章类型: Journal Article
    Gene flow within and between species is a fundamental process shaping the evolutionary history of taxa. However, the extent of hybridization and reinforcement is little documented in the tropics. Here we explore the pattern of gene flow between three sister species from the herbaceous genus Marantochloa (Marantaceae), sympatrically distributed in the understorey of the African rainforest, using data from the chloroplast and nuclear genomes (DNA sequences and AFLP). We found highly contrasting patterns: while there was no evidence of gene flow between M. congensis and M. monophylla, species identity between M. monophylla and M. incertifolia was maintained despite considerable gene flow. We hypothesize that M. incertifolia originated from an ancient hybridization event between M. congensis and M. monophylla, considering the current absence of hybridization between the two assumed parent species, the rare presence of shared haplotypes between all three species and the high percentage of haplotypes shared by M. incertifolia with each of the two parent species. This example is contrasted with two parapatrically distributed species from the same family in the genus Haumania forming a hybrid zone restricted to the area of overlap. This work illustrates the diversity of speciation/introgression patterns that can potentially occur in the flora of tropical Africa.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

公众号