morphogenesis

形态发生
  • 文章类型: Journal Article
    目的:已经在多种生物中广泛研究了牙冠形态发生的模式级联模型,以阐明围绕犬齿后形态的进化史。当前的研究是第一个使用大型现代人类样本来检查下落叶和永久性磨牙的牙冠配置是否与模型得出的期望相符的研究。这项研究有两个主要目标:1)确定同色异谱和抗异谱对的大小是否显着不同,附件性状表达,和相对插入间距,和2)评估早期形成的尖点之间的相对距离是否解释了观察到的副尖点表达的变化。
    方法:牙齿尺寸,插入距离,从代表哈佛所罗门群岛项目参与者的下颌牙模的3D扫描中收集形态特征表达数据。配对测试用于比较牙齿大小,附件性状表达,以及双齿形元形物和永久性抗药之间的相对插入距离。实施比例几率逻辑回归以研究较大的副尖点表达的几率如何随早期发展的尖点之间的距离而变化。
    结果:比较配对磨牙,牙齿大小和牙尖5表达存在显著差异。几个相对的插入距离是尖点6表达的重要预测因子,然而,尖点5和尖点7的结果与预期模式不匹配。这些发现支持先前的定量遗传结果,并表明相邻牙冠结构的发育代表了细胞领土和资源的零和分配。因此,这项研究有助于更好地了解人类落叶和恒磨牙冠变异的基础。
    OBJECTIVE: The patterning cascade model of crown morphogenesis has been studied extensively in a variety of organisms to elucidate the evolutionary history surrounding postcanine tooth form. The current research is the first to use a large modern human sample to examine whether the crown configuration of lower deciduous and permanent molars aligns with expectations derived from the model. This study has two main goals: 1) to determine if metameric and antimeric pairs significantly differ in size, accessory trait expression, and relative intercusp spacing, and 2) assess whether the relative distance among early-forming cusps accounts for observed variation in accessory cusp expression.
    METHODS: Tooth size, intercusp distance, and morphological trait expression data were collected from 3D scans of mandibular dental casts representing participants of the Harvard Solomon Islands Project. Paired tests were utilized to compare tooth size, accessory trait expression, and relative intercusp distance between diphyodont metameres and permanent antimeres. Proportional odds logistic regression was implemented to investigate how the odds of greater accessory cusp expression vary as a function of the distance between early-developing cusps.
    RESULTS: Comparing paired molars, significant differences were identified for tooth size and cusp 5 expression. Several relative intercusp distances emerged as important predictors of cusp 6 expression, however, results for cusp 5 and cusp 7 did not match expected patterns. These findings support previous quantitative genetic results and suggest the development of neighboring crown structures represents a zero-sum partitioning of cellular territory and resources. As such, this study contributes to a better understanding of the foundations of deciduous and permanent molar crown variation in humans.
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  • 文章类型: Journal Article
    生殖细胞(GC)是动物和植物中不可或缺的载体,确保跨代遗传连续性。虽然人们普遍认为种系分离的时间在动物和植物之间存在显着差异,随着新证据的不断出现,正在进行的辩论仍在继续。在这次审查中,我们深入研究了植物中雄性生殖细胞规格的研究,我们总结了生殖细胞规范中的核心基因调控回路,显示出与控制分生组织稳态的惊人相似之处。还讨论了动物和植物之间种系建立的相似性。
    Germ cells (GCs) serve as indispensable carriers in both animals and plants, ensuring genetic continuity across generations. While it is generally acknowledged that the timing of germline segregation differs significantly between animals and plants, ongoing debates persist as new evidence continues to emerge. In this review, we delve into studies focusing on male germ cell specifications in plants, and we summarize the core gene regulatory circuits in germ cell specification, which show remarkable parallels to those governing meristem homeostasis. The similarity in germline establishment between animals and plants is also discussed.
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  • 文章类型: Journal Article
    从独特的“虎尾草”物种群样本中提取博物馆DNA,包括中亚和西亚的当地地方病,允许我们确定他们的群体间和群体内关系。这项研究的第一步是通过基于微型计算机断层扫描的网络分类学方法(CTtax)重新评估严重受损的C.armenica类型标本。这使得能够精确描述物种形态;网络类型的三维模型可通过MorphoBank存储库获得。我们根据与哺乳动物集合相关的基于micro-CT的网络数据集的五个要求开发了“AProMadesU”管道。我们的第二步是结合基于cytb的系统发育的背景进行形态学研究的几种细致方法,这有助于我们对“pergrisea”组物种的地位做出分类学决定,例如,C.阿里斯帕,C.Armenica,和C.serezkyensis,当形态学结果与分子系统发育部分不一致时。然而,在两个假设下,我们的发现保留了C.serezkyensis和C.arispa的单独物种水平。此外,我们恢复了Armenica的物种水平。这个分类决定是基于我们的形态空间分析,揭示了岩石the中独特的颅骨下颌形状转变,帮助他们过渡到形态空间/营养壁龛的新区域,从而将它们与其他分析的Crocidura组分开。
    The extraction of museum DNA from a unique collection of samples of the \"Crocidura pergrisea\" species complex, which comprises local endemics of Central and West Asia, allowed us to determine their inter- and intragroup relationships. The first step of this study was the re-evaluation of heavily damaged type specimens of C. armenica via a microcomputed-tomography-based cybertaxonomic approach (CTtax), which enabled a precise description of the species\' morphology; three-dimensional models of the cybertypes were made available through the MorphoBank Repository. We developed the \"AProMaDesU\" pipeline on the basis of five requirements for micro-CT-based cyber-datasets in relation to mammalian collections. Our second step was a combination of several meticulous approaches to morphological investigation against a background of a cytb-based phylogeny, which helped us to make a taxonomic decision about the status of species of the \"pergrisea\" group, e.g., C. arispa, C. armenica, and C. serezkyensis, when the morphological results were partly incongruent with the molecular phylogeny. Nevertheless, under two assumptions, our findings preserved a separate species-level status of C. serezkyensis and C. arispa. In addition, we restored the species-level status of C. armenica. This taxonomic decision is based on our morphospace analysis, which revealed unique craniomandibular shape transformations within the rocky shrews that helped them with the transition to a new area of morphospace/trophic niches and consequently separated them from the other analyzed Crocidura groups.
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  • 文章类型: Journal Article
    关于存储器的许多研究强调了材料衬底和可以存储和可靠读出数据的机制。这里,我专注于互补方面:代理人需要动态地重新解释和修改记忆,以适应他们不断变化的自我和环境。用发育生物学的例子,进化,和合成生物工程,除了神经科学,我建议从记忆的角度来看保持显著性,不是忠诚,适用于从细胞到社会的许多尺度现象。对创意的持续承诺,自适应虚构,从分子到行为层面,是持久性悖论的答案,因为它适用于个人和整个血统。我还推测一个独立于底物的,生活和心灵的过程观表明记忆,作为认知系统的可兴奋媒介中的模式,可以被视为感官创造过程中的活性剂。我探索了生活的观点,作为一组不同的体现视角嵌套的代理,他们尽可能地解释彼此和他们自己过去的信息和行动(多计算)。这种综合表明,跨尺度和学科的对称性统一,这与多样化智力的研究计划和新颖的具体化思想的工程有关。
    Many studies on memory emphasize the material substrate and mechanisms by which data can be stored and reliably read out. Here, I focus on complementary aspects: the need for agents to dynamically reinterpret and modify memories to suit their ever-changing selves and environment. Using examples from developmental biology, evolution, and synthetic bioengineering, in addition to neuroscience, I propose that a perspective on memory as preserving salience, not fidelity, is applicable to many phenomena on scales from cells to societies. Continuous commitment to creative, adaptive confabulation, from the molecular to the behavioral levels, is the answer to the persistence paradox as it applies to individuals and whole lineages. I also speculate that a substrate-independent, processual view of life and mind suggests that memories, as patterns in the excitable medium of cognitive systems, could be seen as active agents in the sense-making process. I explore a view of life as a diverse set of embodied perspectives-nested agents who interpret each other\'s and their own past messages and actions as best as they can (polycomputation). This synthesis suggests unifying symmetries across scales and disciplines, which is of relevance to research programs in Diverse Intelligence and the engineering of novel embodied minds.
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  • 文章类型: Journal Article
    这里,我们报告了转基因Lifeact-EGFP鹌鹑系的产生,用于研究体内形态发生过程中的肌动蛋白组织和动力学。这种转基因禽系允许活胚胎内肌动蛋白结构的高分辨率可视化,从引导细胞形状的亚细胞细丝到协调跨组织运动的上细胞组件。禽类胚胎对活成像的独特适用性有助于研究胚胎发生过程中先前难以处理的过程。使用高分辨率实时成像方法,我们介绍了细胞突起在不同组织环境中的动态行为和形态。此外,通过将实时成像与计算分割相结合,我们可以观察到细胞经历顶端收缩和大规模的肌动蛋白结构,如神经上皮内的多细胞玫瑰花结。这些发现不仅增强了我们对组织形态发生的理解,而且证明了Lifeact-EGFP转基因鹌鹑作为肌动蛋白细胞骨架活体体内研究的新模型系统的实用性。
    Here, we report the generation of a transgenic Lifeact-EGFP quail line for the investigation of actin organization and dynamics during morphogenesis in vivo. This transgenic avian line allows for the high-resolution visualization of actin structures within the living embryo, from the subcellular filaments that guide cell shape to the supracellular assemblies that coordinate movements across tissues. The unique suitability of avian embryos to live imaging facilitates the investigation of previously intractable processes during embryogenesis. Using high-resolution live imaging approaches, we present the dynamic behaviors and morphologies of cellular protrusions in different tissue contexts. Furthermore, through the integration of live imaging with computational segmentation, we visualize cells undergoing apical constriction and large-scale actin structures such as multicellular rosettes within the neuroepithelium. These findings not only enhance our understanding of tissue morphogenesis but also demonstrate the utility of the Lifeact-EGFP transgenic quail as a new model system for live in vivo investigations of the actin cytoskeleton.
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  • 文章类型: Journal Article
    机械力在形态发生和胚胎发生中的重要性已得到广泛认可。但是在细胞和分子水平上理解机制仍然具有挑战性。由于其简单的内部组织,秀丽隐杆线虫是一种有益的研究系统。如实验证明,在由肌动球蛋白网络驱动的稳定伸长的初始阶段之后,肌肉收缩操作一个准周期性的弯曲序列,旋转,和扭转,这导致孵化前胚胎的最终大小为四倍。这里从理论上研究了肌动球蛋白和肌肉如何促进胚胎伸长。一种丝状弹性模型,将组织中生化信号产生的刺激转化为驱动力,解释了肌动蛋白束和肌肉活动下的胚胎变形,并根据能量转换和耗散的影响决定了延迟伸长的机制。我们通过应用于圆柱形结构的拉伸来量化这种动态转换,该结构以有限的弹性模拟身体形状,在所有阶段对野生型和突变胚胎都有很好的一致性和理解。
    The paramount importance of mechanical forces in morphogenesis and embryogenesis is widely recognized, but understanding the mechanism at the cellular and molecular level remains challenging. Because of its simple internal organization, Caenorhabditis elegans is a rewarding system of study. As demonstrated experimentally, after an initial period of steady elongation driven by the actomyosin network, muscle contractions operate a quasi-periodic sequence of bending, rotation, and torsion, that leads to the final fourfold size of the embryos before hatching. How actomyosin and muscles contribute to embryonic elongation is investigated here theoretically. A filamentary elastic model that converts stimuli generated by biochemical signals in the tissue into driving forces, explains embryonic deformation under actin bundles and muscle activity, and dictates mechanisms of late elongation based on the effects of energy conversion and dissipation. We quantify this dynamic transformation by stretches applied to a cylindrical structure that mimics the body shape in finite elasticity, obtaining good agreement and understanding of both wild-type and mutant embryos at all stages.
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  • 文章类型: Journal Article
    大多数杆状和一些丝状植物病毒编码富含半胱氨酸的蛋白(CRP),在病毒毒力中起作用;然而,这些CRPs在病毒感染中的作用在很大程度上仍然未知.这里,我们使用大麦条纹花叶病毒(BSMV)作为模型来研究其CRP在病毒形态发生中的重要作用。CRP蛋白γb直接与BSMV外壳蛋白(CP)相互作用,γb中His-85位点上的突变预测会产生潜在的CCCH基序,或者暴露于病毒体表面的CP中His-13位点上的突变会消除锌结合活性及其相互作用。免疫金标记实验表明,γb以Zn2依赖性方式与杆状BSMV病毒体的表面结合,增强CP的RNA结合活性,促进病毒体组装和稳定性,表明γb与病毒体的Zn2依赖性物理缔合对于BSMV形态发生至关重要。有趣的是,不同的CRP与它们的杆状病毒体紧密结合是弗吉尼亚病毒科(不包括烟草病毒属)和贝病毒科的成员所采用的一般特征。一起,这些结果揭示了迄今为止未知的CRPs在病毒颗粒的组装和稳定性中的作用,扩大我们对病毒形态发生的分子机制的理解。
    The majority of rod-shaped and some filamentous plant viruses encode a cysteine-rich protein (CRP) that functions in viral virulence; however, the roles of these CRPs in viral infection remain largely unknown. Here, we used barley stripe mosaic virus (BSMV) as a model to investigate the essential role of its CRP in virus morphogenesis. The CRP protein γb directly interacts with BSMV coat protein (CP), the mutations either on the His-85 site in γb predicted to generate a potential CCCH motif or on the His-13 site in CP exposed to the surface of the virions abolish the zinc-binding activity and their interaction. Immunogold-labeling assays show that γb binds to the surface of rod-shaped BSMV virions in a Zn2+-dependent manner, which enhances the RNA binding activity of CP and facilitates virion assembly and stability, suggesting that the Zn2+-dependent physical association of γb with the virion is crucial for BSMV morphogenesis. Intriguingly, the tightly binding of diverse CRPs to their rod-shaped virions is a general feature employed by the members in the families Virgaviridae (excluding the genus Tobamovirus) and Benyviridae. Together, these results reveal a hitherto unknown role of CRPs in the assembly and stability of virus particles, and expand our understanding of the molecular mechanism underlying virus morphogenesis.
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  • 文章类型: Journal Article
    Notum是Wnt/β-连环蛋白信号传导的直接靶标,并且在负反馈回路中作为Wnt抑制剂发挥关键作用。在牙齿上,已知Notum在成牙本质细胞中表达,在Notum缺陷小鼠中已经报道了严重的牙本质缺陷和不规则的牙根。然而,Notum在早期牙齿发育中的精确表达模式,Notum在冠状和根部模式中的作用仍然难以捉摸。在本研究中,我们确定了一个新的Notum表达在初级釉质结(EK),次要EK,和牙齿发育过程中的牙乳头。Notum缺陷小鼠表现出增大的继发性EK,导致更广泛的尖端,改变了尖点模式,并减少表冠轮廓的凹度。这些牙冠轮廓的改变导致颈舌长度的减少,从而在Notum缺陷小鼠中诱导根融合。总的来说,这些结果表明,次级EK大小,由Wnt/Notum负反馈回路调节,在牙齿形态发生过程中对牙冠和牙根的模式有重大影响。
    Notum is a direct target of Wnt/β-catenin signaling and plays a crucial role as a Wnt inhibitor within a negative feedback loop. In the tooth, Notum is known to be expressed in odontoblasts, and severe dentin defects and irregular tooth roots have been reported in Notum-deficient mice. However, the precise expression pattern of Notum in early tooth development, and the role of Notum in crown and root patterns remain elusive. In the present study, we identified a novel Notum expression in primary enamel knot (EK), secondary EKs, and dental papilla during tooth development. Notum-deficient mice exhibited enlarged secondary EKs, resulting in broader cusp tips, altered cusp patterns, and reduced concavity in crown outline. These alterations in crown outline led to a reduction in cervical tongue length, thereby inducing root fusion in Notum-deficient mice. Overall, these results suggest that the secondary EK size, regulated by the Wnt/Notum negative feedback loop, has a significant impact on the patterns of crown and root during tooth morphogenesis.
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  • 文章类型: Journal Article
    增殖上皮中细胞的多边形形状是细胞骨骼皮质的张力和细胞周期设定的堆积几何形状的结果。在幼体果蝇表皮中,两个细胞群,组织细胞和幼虫上皮细胞,当它们在有限的身体表面生长时争夺空间。它们在没有细胞分裂的情况下这样做。我们报道了幼虫发育过程中组织母细胞的惊人形态转变,它们从在粘附连接水平上具有笔直细胞轮廓的紧张网络构型变为高度折叠的形态。组织母细胞的顶端表面收缩,而它们生长的粘附体接合处折叠,形成深的小叶。生长中的成组织细胞的体积增加被基底容纳,补偿根尖面积的收缩。顶端连接的折叠几何形状类似于弹性屈曲,我们表明,组织母细胞顶端结构域的收缩与连接的持续增长之间的不平衡会触发屈曲。我们的模型得到了激光解剖和光学镊子实验以及计算机模拟的支持。我们的分析确定了组织细胞储存机械能的能力比迄今为止研究的大多数其他上皮细胞类型要大得多。同时保留在小时时间尺度上消散压力的能力。最后,我们提出了一种可能的机制,通过表皮的侧向压力来调节组织细胞顶端的大小,由细胞在有限表面上的生长驱动。屈曲可有效地在其顶端平面上压实组织母细胞,并可避免在幼虫生命期间对这些成年表皮前体造成身体伤害。我们的工作表明,在生长的非分裂细胞中,压缩力,而不是紧张,可以驱动细胞形态。
    The polygonal shape of cells in proliferating epithelia is a result of the tensile forces of the cytoskeletal cortex and packing geometry set by the cell cycle. In the larval Drosophila epidermis, two cell populations, histoblasts and larval epithelial cells, compete for space as they grow on a limited body surface. They do so in the absence of cell divisions. We report a striking morphological transition of histoblasts during larval development, where they change from a tensed network configuration with straight cell outlines at the level of adherens junctions to a highly folded morphology. The apical surface of histoblasts shrinks while their growing adherens junctions fold, forming deep lobules. Volume increase of growing histoblasts is accommodated basally, compensating for the shrinking apical area. The folded geometry of apical junctions resembles elastic buckling, and we show that the imbalance between the shrinkage of the apical domain of histoblasts and the continuous growth of junctions triggers buckling. Our model is supported by laser dissections and optical tweezer experiments together with computer simulations. Our analysis pinpoints the ability of histoblasts to store mechanical energy to a much greater extent than most other epithelial cell types investigated so far, while retaining the ability to dissipate stress on the hours time scale. Finally, we propose a possible mechanism for size regulation of histoblast apical size through the lateral pressure of the epidermis, driven by the growth of cells on a limited surface. Buckling effectively compacts histoblasts at their apical plane and may serve to avoid physical harm to these adult epidermis precursors during larval life. Our work indicates that in growing nondividing cells, compressive forces, instead of tension, may drive cell morphology.
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  • 文章类型: Journal Article
    外胚层器官的发育始于分层的上皮胎盘的形成,随着器官的成形,该上皮胎盘逐渐内陷到下面的间充质中。分泌分子的信号传导对于上皮形态发生至关重要,但是这些信息如何导致细胞重排和组织形状变化仍然是一个悬而未决的问题。使用鼠标牙列作为模型,我们首先确定非肌肉肌球蛋白II对于牙齿上皮内陷至关重要,并显示其通过促进细胞-细胞粘附和持续的趋同细胞运动在基底上发挥功能。Shh信号传导通过经由AKT诱导肌球蛋白II激活来控制这些过程。AKT和肌球蛋白II的药理学诱导也可以挽救由Shh的抑制引起的缺陷。一起,我们的结果支持了一个模型,其中Shh信号通过肌球蛋白II传递,以有效地进行细胞重排以进行适当的牙齿上皮内陷。
    The development of ectodermal organs begins with the formation of a stratified epithelial placode that progressively invaginates into the underlying mesenchyme as the organ takes its shape. Signaling by secreted molecules is critical for epithelial morphogenesis, but how that information leads to cell rearrangement and tissue shape changes remains an open question. Using the mouse dentition as a model, we first establish that non-muscle myosin II is essential for dental epithelial invagination and show that it functions by promoting cell-cell adhesion and persistent convergent cell movements in the suprabasal layer. Shh signaling controls these processes by inducing myosin II activation via AKT. Pharmacological induction of AKT and myosin II can also rescue defects caused by the inhibition of Shh. Together, our results support a model in which the Shh signal is transmitted through myosin II to power effective cellular rearrangement for proper dental epithelial invagination.
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