oxidoreductase

氧化还原酶
  • 文章类型: Journal Article
    面对全球气温上升,生物体适应热应激的能力背后的机制仍然是神秘的。稻叶夹,稻长,传统上被视为对温度敏感,矛盾的是,幼虫对热应激表现出强烈的适应能力。这项研究使用了热适应的菌株HA39,该菌株是通过在幼虫阶段多代暴露于39°C而开发的,未适应的菌株HA27在27°C下饲养,以揭示热适应的跨代效应及其调节机制。幼虫的热适应在暴露于高温时会在p中产生健身成本,然而,显著的跨代效应浮出水面,即使在27°C的幼虫恢复过程中没有额外的热暴露,也显示出来自HA39的p的健康益处。这种跨代效应表现出短期记忆,在经历了两代的恢复之后,此外,该效应与超氧化物歧化酶(SOD)酶活性和氧化还原酶基因表达水平增加相关,代表热适应的生理和分子基础。热适应的幼虫显示DNA甲基化水平升高,而来自HA39的p,在恢复世代中,在高温下,去甲基酶基因的上调和两个甲基转移酶基因的下调表明甲基化降低。总之,热适应诱导DNA甲基化,协调热应激记忆并影响氧化还原酶基因和SOD活性的表达水平。热应激记忆增强了移栖害虫对全球变暖的适应。
    In the face of rising global temperatures, the mechanisms behind an organism\'s ability to acclimate to heat stress remain enigmatic. The rice leaf folder, Cnaphalocrocis medinalis, traditionally viewed as temperature-sensitive, paradoxically exhibits robust larval acclimation to heat stress. This study used the heat-acclimated strain HA39, developed through multigenerational exposure to 39°C during the larval stage, and the unacclimated strain HA27 reared at 27°C to unravel the transgenerational effects of heat acclimation and its regulatory mechanisms. Heat acclimation for larvae incurred a fitness cost in pupae when exposed to high temperature, yet a significant transgenerational effect surfaced, revealing heightened fitness benefit in pupae from HA39, even without additional heat exposure during larval recovery at 27°C. This transgenerational effect exhibited a short-term memory, diminishing after two recovery generations. Moreover, the effect correlated with increased superoxide dismutase (SOD) enzyme activity and expression levels of oxidoreductase genes, representing physiological and molecular foundations of heat acclimation. Heat-acclimated larvae displayed elevated DNA methylation levels, while pupae from HA39, in recovery generations, exhibited decreased methylation indicated by the upregulation of a demethylase gene and downregulation of two methyltransferase genes at high temperatures. In summary, heat acclimation induces DNA methylation, orchestrating heat-stress memory and influencing the expression levels of oxidoreductase genes and SOD activity. Heat-stress memory enhances the acclimation of the migratory insect pest to global warming.
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  • 文章类型: Journal Article
    漆酶是工业相关的酶,其已经获得了极大的生物技术重要性。迄今为止,大多数是真菌和嗜温的起源;然而,来自极端微生物的酶具有更大的潜力来承受工业条件。在这项研究中,我们评估了来自热亲碱性细菌芽孢杆菌的重组孢子漆酶的潜力。FNT(FNTL)从四环素中生物降解抗生素,β-内酰胺,和氟喹诺酮家族。这种极端酶以前的特征是在很宽的温度范围内(20-90°C)具有热稳定性和高活性,并且对几种结构不同的底物非常通用,包括顽固的环境污染物,如多环芳烃和合成染料。首先,分子对接分析用于FNTL建模活性位点的初始配体亲和筛选。然后,使用四种高度消耗的抗生素进行了实验测试,每个家庭的代表:四环素,土霉素,阿莫西林,还有环丙沙星.HPLC结果表明,FNTL借助天然氧化还原介质乙酰丁香酮,可以在40、30和20°C下24小时内有效地生物降解91、90和82%的四环素(0.5mgmL-1),分别,产品对大肠杆菌和枯草芽孢杆菌没有明显的生态毒性。这些结果补充了我们以前的研究,强调了这种极端酶在废水生物修复中的应用潜力。
    Laccases are industrially relevant enzymes that have gained great biotechnological importance. To date, most are of fungal and mesophilic origin; however, enzymes from extremophiles possess an even greater potential to withstand industrial conditions. In this study, we evaluate the potential of a recombinant spore-coat laccase from the thermoalkaliphilic bacterium Bacillus sp. FNT (FNTL) to biodegrade antibiotics from the tetracycline, β-lactams, and fluoroquinolone families. This extremozyme was previously characterized as being thermostable and highly active in a wide range of temperatures (20-90 °C) and very versatile towards several structurally different substrates, including recalcitrant environmental pollutants such as PAHs and synthetic dyes. First, molecular docking analyses were employed for initial ligand affinity screening in the modeled active site of FNTL. Then, the in silico findings were experimentally tested with four highly consumed antibiotics, representatives of each family: tetracycline, oxytetracycline, amoxicillin, and ciprofloxacin. HPLC results indicate that FNTL with help of the natural redox mediator acetosyringone, can efficiently biodegrade 91, 90, and 82% of tetracycline (0.5 mg mL-1) in 24 h at 40, 30, and 20 °C, respectively, with no apparent ecotoxicity of the products on E. coli and B. subtilis. These results complement our previous studies, highlighting the potential of this extremozyme for application in wastewater bioremediation.
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  • 文章类型: Journal Article
    Ferroptosis is a recently discovered form of regulated cell death characterized by its distinct dependence on iron and the peroxidation of lipids within cellular membranes. Ferroptosis plays a crucial role in physiological and pathological situations and has attracted the attention of numerous scientists. Ferroptosis suppressive protein 1 (FSP1) is one of the main regulators that negatively regulates ferroptosis through the GPX4-independent FSP1-CoQ10-NAD(P)H axis and is a potential therapeutic target for ferroptosis-related diseases. However, the crystal structure of FSP1 has not been resolved, which hinders the development of therapeutic strategies targeting FSP1. To unravel this puzzle, we purified the human FSP1 (hFSP1) protein using the baculovirus eukaryotic cell expression system and solved its crystal structure at a resolution of 1.75 Å. Furthermore, we evaluated the oxidoreductase activity of hFSP1 with NADH as the substrate and identified E156 as the key amino acid in maintaining hFSP1 activity. Interestingly, our results indicated that hFSP1 exists and functions in a monomeric state. Mutagenesis analysis revealed the critical role of the C-terminal domain in the binding of substrate. These findings significantly enhance our understanding of the functional mechanism of FSP1 and provide a precise model for further drug development.
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  • 文章类型: Journal Article
    氧化还原酶是可以催化生物氧化和还原反应的一类广泛的酶。如今,氧化还原酶在大多数生物能量代谢途径中起着至关重要的作用,它们在生物降解中有重要的应用,生物修复,环境应用,以及生物传感器。然而,游离的氧化还原酶不稳定,难以回收。此外,在大多数氧化还原酶催化反应中需要辅因子,它们是如此昂贵和不稳定,以至于阻碍了它们的工业应用。酶固定化是可以克服这些问题的可行策略。最近,金属有机框架(MOFs)由于其独特的性质,已显示出作为固定化酶的支持材料的巨大潜力,例如高表面积与体积比,化学稳定性,功能可设计性,和可调孔径。本文综述了MOFs及其复合材料作为氧化还原酶固定化载体的应用。以及MOFs作为催化剂和固定化载体在氧化还原反应中的应用,从MOFs材料的功能角度。本文还重点介绍了基于MOF载体的氧化还原酶固定化用于设计酶级联反应系统的潜力。
    Oxidoreductases are a wide class of enzymes that can catalyze biological oxidation and reduction reactions. Nowadays, oxidoreductases play a vital part in most bioenergetic metabolic pathways, which have important applications in biodegradation, bioremediation, environmental applications, as well as biosensors. However, free oxidoreductases are not stable and hard to be recycled. In addition, cofactors are needed in most oxidoreductases catalyze reactions, which are so expensive and unstable that it hinders their industrial applications. Enzyme immobilization is a feasible strategy that can overcome these problems. Recently, metal-organic frameworks (MOFs) have shown great potential as support materials for immobilizing enzymes due to their unique properties, such as high surface-area-to-volume ratio, chemical stability, functional designability, and tunable pore size. This review discussed the application of MOFs and their composites as immobilized carriers of oxidoreductase, as well as the application of MOFs as catalysts and immobilized carriers in redox reactions in the perspective of the function of MOFs materials. The paper also focuses on the potential of MOF carrier-based oxidoreductase immobilization for designing an enzyme cascade reaction system.
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  • 文章类型: Journal Article
    铁凋亡是一种受调节的细胞死亡形式,依赖于细胞内铁的积累和随后的氧化应激。铁细胞死亡的特征是不受控制的脂质过氧化,导致质膜损伤和破裂。质膜完整性的丧失导致细胞内成分的释放,包括损伤相关的分子模式,并且可以以同步的方式在细胞之间传播死亡。了解铁细胞膜损伤的机制对于理解这种形式的细胞死亡至关重要。本章概述了铁凋亡中检测质膜完整性的技术,包括透射电子显微镜分析,流式细胞术分析,并评估氧化还原酶介导的膜损伤。
    Ferroptosis is a form of regulated cell death that relies on the accumulation of intracellular iron and subsequent oxidative stress. Ferroptotic cell death is characterized by uncontrolled lipid peroxidation, which leads to plasma membrane damage and rupture. The loss of plasma membrane integrity results in the release of intracellular components, including damage-associated molecular patterns, and can propagate death between cells in a synchronized manner. Understanding the mechanisms of ferroptotic membrane damage is crucial to comprehending this form of cell death. This chapter provides a summary of techniques for detecting plasma membrane integrity in ferroptosis, including transmission electron microscopy analysis, flow cytometry analysis, and assessments of oxidoreductase-mediated membrane damage.
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  • 文章类型: Journal Article
    纳米酶是本世纪初开始应用的一种新型材料,它的诞生促进了化学的发展,材料科学,和生物学。纳米酶可以作为天然酶的替代品,具有广泛的应用;因此,它引起了社会各界的广泛关注,研究的数量不断增加。在本文中,从主要功能,基于纳米酶的生物传感器的构建,缺血性中风的治疗,并阐述了其内部机理和催化原理。最后,提出了纳米酶未来发展的障碍和挑战。
    Nanozymes are a new kind of material which has been applied since the beginning of this century, and its birth has promoted the development of chemistry, materials science, and biology. Nanozymes can be used as a substitute for natural enzyme and has a wide range of applications; therefore, it has attracted extensive attention from all sectors of the community, and the number of studies has constantly increasing. In this paper, we introduced the outstanding achievements in the field of nanozymes in recent years from the main function, the construction of nanozyme-based biosensors, and the treatment of ischemic stroke, and we also illustrated the internal mechanism and the catalytic principle. In the end, the obstacles and challenges in the future development of nanozymes were proposed.
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  • 文章类型: Journal Article
    凋亡诱导因子(AIF),线粒体中的一种黄素蛋白,最初发现在促凋亡因子的刺激下诱导凋亡。作为线粒体黄素腺嘌呤二核苷酸依赖性氧化还原酶,AIF通过调节呼吸酶活性参与哺乳动物细胞代谢的调节,抗氧化应激,促进线粒体自噬和葡萄糖摄取,等。在这里,重点介绍了AIF在代谢介导中的分子机制的研究进展以及AIF在代谢性疾病中的研究进展,以及AIF介导的凋亡过程。
    本文的文章是通过回顾PubMed上有关AIF在代谢疾病中的作用的文献而获得的。搜索词包括:“凋亡”,“代谢”或“代谢疾病”加“凋亡诱导因子”。标题,摘要,我们对1996年10月至2022年6月出版的相关英文出版物的全文进行了手动筛选,以阐明AIF在代谢性疾病中的作用.
    我们发现AIF在多种代谢相关疾病中起着重要作用,比如糖尿病,肥胖,代谢综合征,和肿瘤代谢,通过介导细胞凋亡。
    我们总结了AIF在多种代谢性疾病中的重要作用,这可能有助于进一步扩大对AIF的理解和开发AIF相关的治疗靶点。
    UNASSIGNED: Apoptosis-inducing factor (AIF), a flavin protein in mitochondria, is originally found to induce apoptosis under the stimulation of pro-apoptotic factors. As a mitochondrial flavin adenine dinucleotide-dependent oxidoreductase, AIF is involved in the regulation of mammalian cell metabolism by regulating respiratory enzyme activity, antioxidant stress, promoting mitochondrial autophagy and glucose uptake, etc. Herein, we focused on the research progress regarding the molecular mechanism of AIF in metabolic mediation and the recent research on AIF in metabolic diseases, as well as the AIF-mediated apoptotic process.
    UNASSIGNED: Articles for this paper were obtained by reviewing the literature related to the role of AIF in metabolic diseases on PubMed. The search terms included the following: \"apoptosis\", \"metabolism\" or \"metabolic diseases\" plus \"apoptosis-inducing factor\". The titles, abstracts, and full texts of relevant English-language publications published from October 1996 to June 2022 were manually screened to clarify the role of AIF in metabolic diseases.
    UNASSIGNED: We found that AIF played an important role in a variety of metabolically-related diseases, such as diabetes, obesity, metabolic syndrome, and tumor metabolism, by mediating apoptosis.
    UNASSIGNED: We summarized the important role of AIF in a variety of metabolic diseases, which might help to further expand the understanding of AIF and to develop AIF-related therapeutic targets.
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  • 文章类型: Journal Article
    硒蛋白GPX4(谷胱甘肽过氧化物酶4),最初被称为PHGPX(磷脂过氧化氢谷胱甘肽过氧化物酶),是利用谷胱甘肽作为清除脂质过氧化产物的还原剂的主要氧化还原酶。有三种GPX4亚型:胞质(cGPX4),线粒体(mGPX4),和核(nGPX4),在胚胎发育和成年期具有不同的时空表达模式。除了诱导主要表型的铁死亡,GPX4的缺失可以在某些细胞中引发细胞凋亡,坏死,焦亡,或者parthanatos,介导或加速发育缺陷,组织损伤,和无菌炎症。GPX4与自噬降解途径的相互作用进一步调节响应于氧化应激的细胞命运。受损的GPX4功能与肿瘤发生有关,神经变性,不孕症,炎症,免疫疾病,和缺血再灌注损伤。此外,GPX4中的R152H突变可促进Sedaghadian型脊柱干phy端发育不良的发展,新生儿的一种罕见而致命的疾病。这里,我们讨论了经典的GPX4功能以及新兴的GPX4调节过程在细胞死亡中的作用,自噬,和疾病。缩写:AA:花生四烯酸;cGPX4:胞质GPX4;CMA:伴侣介导的自噬;DAMPs:危险/损伤相关分子模式;mGPX4:线粒体GPX4;nGPX4:核GPX4;GSDMD-N:GSDMD的N-末端片段;I/R:缺血再灌注;PLOPX4:磷脂多聚脂肪酸:不饱和脂肪酸:SSPUOOPUPS类过氧化氢类
    Selenoprotein GPX4 (glutathione peroxidase 4), originally known as PHGPX (phospholipid hydroperoxide glutathione peroxidase), is the main oxidoreductase in the use of glutathione as a reducing agent in scavenging lipid peroxidation products. There are three GPX4 isoforms: cytosolic (cGPX4), mitochondrial (mGPX4), and nuclear (nGPX4), with distinct spatiotemporal expression patterns during embryonic development and adult life. In addition to inducing the main phenotype of ferroptosis, the loss of GPX4 can in some cells trigger apoptosis, necroptosis, pyroptosis, or parthanatos, which mediates or accelerates developmental defects, tissue damage, and sterile inflammation. The interaction of GPX4 with the autophagic degradation pathway further modulates cell fate in response to oxidative stress. Impaired GPX4 function is implicated in tumorigenesis, neurodegeneration, infertility, inflammation, immune disorders, and ischemia-reperfusion injury. Additionally, the R152H mutation in GPX4 can promote the development of Sedaghatian-type spinal metaphyseal dysplasia, a rare and fatal disease in newborns. Here, we discuss the roles of classical GPX4 functions as well as emerging GPX4-regulated processes in cell death, autophagy, and disease.Abbreviations: AA: arachidonic acid; cGPX4: cytosolic GPX4; CMA: chaperone-mediated autophagy; DAMPs: danger/damage-associated molecular patterns; mGPX4: mitochondrial GPX4; nGPX4: nuclear GPX4; GSDMD-N: N-terminal fragment of GSDMD; I/R: ischemia-reperfusion; PLOOH: phospholipid hydroperoxide; PUFAs: polyunsaturated fatty acids; RCD: regulated cell death; ROS: reactive oxygen species; Se: selenium; SSMD: Sedaghatian-type spondylometaphyseal dysplasia; UPS: ubiquitin-proteasome system.
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  • 文章类型: Journal Article
    塑料废物被认为是最常见和持久的海洋污染物。不仅在浅水中发现,但也在海底。然而,深海微生物是否已经进化出降解塑料的能力仍然难以捉摸。在这项研究中,发现一种深海细菌VelezensisGUIA能够降解水性聚氨酯。转录组分析表明,补充水性聚氨酯上调了许多与孢子萌发相关的基因的表达,表明塑料的存在对菌株GUIA的生长有影响。此外,水性聚氨酯的补充也明显上调了许多编码脂肪酶的基因的表达,蛋白酶,和氧化还原酶。液相色谱-质谱(LC-MS)结果表明,在菌株GUIA中负责塑料降解的潜在酶被鉴定为氧化还原酶,蛋白酶,还有脂肪酶,这与转录组学分析一致。结合体外表达和降解测定以及傅里叶变换红外(FTIR)分析,我们证明了菌株GUIA的氧化还原酶Oxr-1是水性聚氨酯的关键降解酶。此外,氧化还原酶Oxr-1也被证明可以降解可生物降解的聚己二酸丁二醇酯(PBAT)膜,表明其具有广泛的应用潜力。重要性塑料的广泛和不分青红皂白的处置不可避免地导致环境污染。目前的填埋和焚烧方法造成的二次污染对大气造成了严重的破坏,土地,和河流。因此,微生物降解是解决塑料污染的理想途径。最近,海洋环境正在成为筛选具有潜在塑料降解能力的微生物的热点。在这项研究中,深海芽孢杆菌菌株被证明可以降解水性聚氨酯和可生物降解的PBAT膜。FAD结合氧化还原酶Oxr-1被证明是介导塑料降解的关键酶。我们的研究不仅为开发塑料降解的生物产品提供了良好的候选者,而且为研究深海微生物中塑料降解介导的碳循环铺平了道路。
    Plastic wastes have been recognized as the most common and durable marine contaminants, which are not only found in the shallow water, but also on the sea floor. However, whether deep-sea microorganisms have evolved the capability of degrading plastic remains elusive. In this study, a deep-sea bacterium Bacillus velezensis GUIA was found to be capable of degrading waterborne polyurethane. Transcriptomic analysis showed that the supplement of waterborne polyurethane upregulated the expression of many genes related to spore germination, indicating that the presence of plastic had effects on the growth of strain GUIA. In addition, the supplement of waterborne polyurethane also evidently upregulated the expressions of many genes encoding lipase, protease, and oxidoreductase. Liquid chromatography-mass spectrometry (LC-MS) results showed that potential enzymes responsible for plastic degradation in strain GUIA were identified as oxidoreductase, protease, and lipase, which was consistent with the transcriptomic analysis. In combination of in vitro expression and degradation assays as well as Fourier transform infrared (FTIR) analysis, we demonstrated that the oxidoreductase Oxr-1 of strain GUIA was the key degradation enzyme toward waterborne polyurethane. Moreover, the oxidoreductase Oxr-1 was also shown to degrade the biodegradable polybutylene adipate terephthalate (PBAT) film indicating its wide application potential. IMPORTANCE The widespread and indiscriminate disposal of plastics inevitably leads to environmental pollution. The secondary pollution by current landfill and incineration methods causes serious damage to the atmosphere, land, and rivers. Therefore, microbial degradation is an ideal way to solve plastic pollution. Recently, the marine environment is becoming a hot spot to screen microorganisms possessing potential plastic degradation capabilities. In this study, a deep-sea Bacillus strain was shown to degrade both waterborne polyurethane and biodegradable PBAT film. The FAD-binding oxidoreductase Oxr-1 was demonstrated to be the key enzyme mediating plastic degradation. Our study not only provided a good candidate for developing bio-products toward plastic degradation but also paved a way to investigate the carbon cycle mediated by plastic degradation in deep-sea microorganisms.
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  • 文章类型: Journal Article
    Among the emerging sweeteners, d-tagatose occupies a significant niche due to its low calorific value, antidiabetic property and growth promoting effects on intestinal probiotics. Recently, the main approach for d-tagatose biosynthesis is l-arabinose isomerase-based isomerization reaction from galactose, which shows relatively low conversion rate because of unfavorable thermodynamic equilibria. Herein, oxidoreductases, d-xylose reductase and galactitol dehydrogenase, together with endogenous β-galactosidase were employed to catalyze the biosynthesis of d-tagatose from lactose with a yield of 0.282 g/g in Escherichia coli. Then, a deactivated CRISPR-associated (Cas) proteins-based DNA scaffold system was developed, which were proved to be efficient for assembling the oxidoreductases in vivo and got a 1.44-folds increase in d-tagatose titer and yield. Further, by employing d-xylose reductase with higher galactose affinity and activity, as well as overexpressing pntAB genes, the d-tagatose yield from lactose (0.484 g/g) increased to 92.0 % of the theoretical value, 1.72-times as that of original strain. Finally, whey powder, a lactose-rich food by-product, was bifunctionally utilized as an inducer and substrate. In the 5 L bioreactor, d-tagatose titer reached 32.3 g/L with little galactose detected, and the yield from lactose approached 0.402 g/g, which was the highest from waste biomass in the literature. The strategies used here might provide new insights into the biosynthesis of d-tagatose in future.
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