Echinodermata

棘皮病
  • 文章类型: Journal Article
    蛇类,作为一个重要的棘皮动物群体,在海洋底栖生境中广泛分布。以前的研究已经确定了黄海中两种主要的蛇类动物,包括食肉动物(Ophiurasarsiivadicola和Stegophiurasladeni)和悬浮饲养者(Ophiopholismirabilis)。尽管它们在底栖食物网中发挥了生态作用,人们对它们积累的微量金属元素(TME)知之甚少。在这项研究中,TMEs的含量(Pb,As,Cd,Hg,Cr,Cu,Zn),测定了北黄海三种蛇类物种的甲基汞(MeHg)和δ15N值。我们的结果表明,一些TMEs(As,Cd,Cr,Cu和Zn)和MeHg在三种蛇类动物中存在显着差异(p<0.05)。痕量金属元素(Pb,Cd和Zn)和蛇类的δ15N值(p<0.05)。此外,As和Zn在两种摄食类型的类蛇类动物中表现出相反的相关性,这可能与它们的寄主种类和不同的摄食习惯有关。这项研究为了解棘皮动物中痕量金属元素的分布提供了基础数据。
    Ophiuroids, as an important group of echinoderms, are widely distributed in marine benthic habitats. Previous studies have identified two primary feeding types of ophiuroids in the Yellow Sea, including carnivorous (Ophiura sarsii vadicola and Stegophiura sladeni) and suspension feeders (Ophiopholis mirabilis). Despite their ecological role in the benthic food webs, little is known about their accumulation of trace metal elements (TMEs). In this study, the content of TMEs (Pb, As, Cd, Hg, Cr, Cu, Zn), methylmercury (MeHg) and δ15N value of three ophiuroids species from the North Yellow Sea were determined. Our results showed that the contents of some TMEs (As, Cd, Cr, Cu and Zn) and MeHg were significantly different in three species of ophiuroid (p < 0.05). There were significant correlations between the accumulations of trace metal elements (Pb, Cd and Zn) and the δ15N value of the ophiuroids (p < 0.05). Additionally, As and Zn exhibited opposite correlations in ophiuroid with two feeding types, which may be related to their host species and different feeding habits. This study provided fundamental data for understanding the distribution of trace metal elements in echinoderms.
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  • 文章类型: Journal Article
    Sox基因家族,广泛分布在整个动物界的转录因子集合,在许多发育过程中起着至关重要的作用。棘皮动物在许多研究领域占有举足轻重的地位,比如神经科学,性别决定和分化,和胚胎发育。然而,到目前为止,尚未进行全面的研究来表征和分析棘皮动物中的Sox基因。在本研究中,使用生物信息学方法分析了11种棘皮动物中Sox家族基因的进化和表达。结果显示共有70个Sox基因,不同棘皮动物的计数范围从5到8。系统发育分析表明,鉴定的Sox基因可以分为七个不同的类别:SoxB1类,SoxB2类,SoxC类,SoxD类,SoxE类,SoxF类和SoxH类。值得注意的是,SoxB1,SoxB2和SoxF基因普遍存在于所有研究的棘皮动物中,这表明这些基因在棘皮动物中可能是保守的。在三种棘皮动物中观察到的Sox基因的时空表达模式表明,各种Sox成员发挥着不同的功能作用。值得注意的是,SoxB1可能参与棘皮动物卵巢发育,而SoxH可能在海星和海参的睾丸发育中起关键作用。总的来说,本研究为探索棘皮动物中的Sox基因提供了分子基础,为未来的系统发育和基因组研究提供了宝贵的资源。
    The Sox gene family, a collection of transcription factors widely distributed throughout the animal kingdom, plays a crucial role in numerous developmental processes. Echinoderms occupy a pivotal position in many research fields, such as neuroscience, sex determination and differentiation, and embryonic development. However, to date, no comprehensive study has been conducted to characterize and analyze Sox genes in echinoderms. In the present study, the evolution and expression of Sox family genes across 11 echinoderms were analyzed using bioinformatics methods. The results revealed a total of 70 Sox genes, with counts ranging from 5 to 8 across different echinoderms. Phylogenetic analysis revealed that the identified Sox genes could be categorized into seven distinct classes: the SoxB1 class, SoxB2 class, SoxC class, SoxD class, SoxE class, SoxF class and SoxH class. Notably, the SoxB1, SoxB2, and SoxF genes were ubiquitously present in all the echinoderms studied, which suggests that these genes may be conserved in echinoderms. The spatiotemporal expression patterns observed for Sox genes in the three echinoderms indicated that various Sox members perform distinct functional roles. Notably, SoxB1 is likely involved in echinoderm ovary development, while SoxH may play a crucial role in testis development in starfish and sea cucumber. In general, the present investigation provides a molecular foundation for exploring the Sox gene in echinoderms, providing a valuable resource for future phylogenetic and genomic studies.
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  • 文章类型: Dataset
    冷水物种Ophiurasarsii,一颗脆弱的星星,是北极大陆架地区的重要棘皮动物,对气候变化高度敏感。然而,缺乏高质量的基因组阻碍了对其适应性进化的透彻理解。在这项研究中,我们报道了O.sarsii的第一个染色体水平基因组组装。基因组组装总计1.57Gb,包含19条染色体,GC含量为37.11%,支架N50长度为78.03Mb。基准通用单拷贝直射同源物(BUSCO)评估得出该组件的完整性估计为93.5%。我们预测了总共27,099个蛋白质编码基因,带有25,079个功能注释。基因组由58.09%的转座因子组成。O.sarsii的染色体水平基因组有助于我们了解海洋生物的起源和进化。
    The cold-water species Ophiura sarsii, a brittle star, is a key echinoderm in the Arctic continental shelf region, highly sensitive to climate change. However, the absence of a high-quality genome has hindered a thorough understanding of its adaptive evolution. In this study, we reported the first chromosome-level genome assembly of O. sarsii. The genome assembly totalled 1.57 Gb, encompassing 19 chromosomes with a GC content of 37.11% and a scaffold N50 length of 78.03 Mb. The Benchmarking Universal Single-Copy Orthologs (BUSCO) assessment yielded a completeness estimate of 93.5% for this assembly. We predicted a total of 27,099 protein-coding genes, with 25,079 functionally annotated. The genome was comprised of 58.09% transposable elements. This chromosome-level genome of O. sarsii contributes to our understanding of the origin and evolution of marine organisms.
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  • 文章类型: Journal Article
    BrisingidaFisher1928是目前公认的七个海星订单之一,也是最鲜为人知的深海居民类群之一。现代深海探险揭示了它们在包括海山在内的各种深海环境中的常见现象,盆地和热液喷口外围,强调澄清其全球多样性和系统发育的必要性。在这项研究中,我们介绍了Brisingida的全面分子系统发育,其中包括迄今为止最高的分类学多样性。DNA序列(COI,16S,12S和28S)是从全球海洋中收集的225个标本中获得的,鉴定为58种,跨越17个现存属中的15个。使用最大似然和贝叶斯推断方法推断系统发育关系,揭示多系家族和属,并在基于先验形态学的系统学中表明不可忽视的偏差。基于新的系统发育,一种新的秩序分类,由5个科17属组成,是提议的。Odinellidae家庭,Brisingasteridae和Novodiniidae(sensuClark和Mah2001)被复活以涵盖Odinella属,Brisingaster和Novodinia.Brisingidae和Freyellidae被修改为包括11和3属,分别。一个新的属和种,描述了两个新的亚属和七个新的组合,并提供了每个属和科的关键。在当前的系统发育假设下评估了形态性状的转变。在许多属和物种中发现了一系列的拟态特征,这导致了系统发育遥远群体的高度同质。我们的结果提供了有关该顺序的系统发育和个体发育的新见解,并强调了在合理的系统发育假设下评估字符收敛性的必要性。
    Brisingida Fisher 1928 is one of the seven currently recognised starfish orders, and one of the least known taxa as being exclusive deep-sea inhabitants. Modern deep-sea expeditions revealed their common occurrences in various deep-sea settings including seamounts, basins and hydrothermal vent peripheral, underlining the necessity of clarifying their global diversity and phylogeny. In this study, we present a comprehensive molecular phylogeny of Brisingida which encompasses the highest taxonomic diversity to date. DNA sequences (COI, 16S, 12S and 28S) were obtained from 225 specimens collected in the global ocean, identified as 58 species spanning 15 of the 17 extant genera. Phylogenetic relationship was inferred using both maximum likelihood and Bayesian inference methods, revealing polyphyletic families and genera and indicating nonnegligible bias in prior morphology-based systematics. Based on the new phylogeny, a novel classification of the order, consisting of 5 families and 17 genera, is proposed. Families Odinellidae, Brisingasteridae and Novodiniidae (sensu Clark and Mah, 2001) were resurrected to encompass the genera Odinella, Brisingaster and Novodinia. Brisingidae and Freyellidae were revised to include 11 and 3 genera, respectively. A new genus and species, two new subgenera and seven new combinations are described and a key to each genus and family is provided. Transformations of morphological traits were evaluated under the present phylogenetic hypothesis. A series of paedomorphic characters were found in many genera and species, which led to a high degree of homoplasy across phylogenetically distant groups. Our results provide new insights in the phylogeny and ontogeny of the order, and highlight the necessity to evaluate character convergence under sound phylogenetic hypothesis.
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  • 文章类型: Journal Article
    珊瑚礁群落表现出高度的物种多样性和广泛的生物关系,包括广泛的共生和复杂的食物利用模式。在我们的研究中,我们调查了常见的海百合宿主Comasterschlegelii与其视神经共生体Gymnolophusobscura之间的共生关系。使用脂肪酸生物标志物和稳定同位素组成的组合,我们探讨了它们的有机物利用策略和营养关系的差异。稳定同位素的结果表明,obscura的δ15N值高于其海百合宿主。颗粒有机物和浮游植物被确定为这两种物种的主要食物来源,然而,C.schlegelii显示出底栖微藻的较高比例贡献。脂肪酸标记表明,石竹更加依赖底栖微藻,如硅藻,与G.obscura相比,对debritic有机物质和细菌的研究较少。G.obscura的δ15N值升高以及宿主与共生体之间相似的食物来源贡献率表明,类蛇床子以海百合过滤的物质为食,并且饮食与宿主相似。我们的研究结果为海百合类和蛇类的共生模式提供了见解,同时还提供了有关共生礁物种如何选择有机质利用策略来适应环境的基础数据。
    Coral reef community exhibits high species diversity and a broad range of biological relationships, including widespread symbiosis and complex food utilization patterns. In our study, we investigated the symbiotic relationship between the commonly crinoid host Comaster schlegelii and its ophiuroid obligatory symbiont Gymnolophus obscura. Using a combination of fatty acid biomarkers and stable isotopic compositions, we explored differences in their organic matter utilization strategies and nutritional relationships. The result of stable isotopes revealed that G. obscura had higher δ15N values than its crinoid host. Particulate organic matter and phytoplankton were identified as the primary food sources for both species, however C. schlegelii showed a higher proportional contribution from benthic microalgae. Fatty acid markers showed that C. schlegelii was more dependent on benthic microalgae such as diatoms, and less on debritic organic matter and bacteria than G. obscura. Elevated δ15N values of G. obscura and similar food source contribution rates between the host and symbiont suggest that ophiuroid feeds on materials filtered by crinoids and have similar diet to the host. Our results provide insights into the symbiotic patterns of crinoids and ophiuroids, while also supplying foundational data on how symbiotic reef species select organic matter utilization strategies to adapt to their environment.
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  • 文章类型: Review
    棘皮动物是无脊椎动物的氘口门,含有类孔虫,小行星,Holothuitroids,海百合,和蛇类。棘皮动物具有特殊的进化位置和独特的特征,包括五层放射状体结构,精细的钙质内骨骼,和多功能的水血管系统。棘皮动物表现出非常多样化的生殖模式:无性繁殖,有性生殖,性逆转,等。众所周知,内分泌调节在性别分化中起着重要作用,性腺发育和成熟,配子发生,和脊椎动物的生殖行为。然而,棘皮动物的生殖内分泌学作为最接近的海洋无脊椎动物亲属与脊索动物的进化模型的全貌尚未揭示。这里,我们回顾了棘皮动物生殖内分泌学的过去和最近的研究进展,主要包括两个部分:棘皮动物中的性类固醇和棘皮动物繁殖中的神经肽调节。本文综述了棘皮动物生殖生物学中的多种内分泌调控机制。它讨论了类似脊椎动物的性类固醇,推定的类固醇生成途径和代谢,和生殖相关的神经肽。该综述将为更深入地了解下十二指肠造口性腺发育的内分泌调节机制以及内分泌控制在水产养殖中的经济型棘皮动物物种中的应用提供更深入的了解。
    Echinoderms are a phylum of invertebrate deuterostomes, which contain echinoids, asteroids, holothuroids, crinoids, and ophiuroids. Echinoderms have special evolutionary position and unique characteristics, including pentamerous radial body structure, elaborate calcareous endoskeletons, and versatile water vascular system. Echinoderms exhibit extraordinarily diverse reproductive modes: asexual reproduction, sexual reproduction, sexual reversal, etc. Endocrine regulation plays important well-known roles in sex differentiation, gonadal development and maturation, gametogenesis, and reproductive behavior in vertebrates. However, the entire picture of reproductive endocrinology in echinoderms as an evolutionary model of the closest marine invertebrate relatives to chordates has not been revealed. Here, we reviewed previous and recent research progress on reproductive endocrinology in echinoderms, mainly including two sections: Sex steroids in echinoderms and neuropeptide regulation in echinoderm reproduction. This review introduces a variety of endocrine regulatory mechanisms in reproductive biology of echinoderms. It discusses the vertebrate-like sex steroids, putative steroidogenic pathway and metabolism, and reproduction-related neuropeptides. The review will provide a deeper understanding about endocrine regulatory mechanisms of gonadal development in lower deuterostomes and the application of endocrine control in economic echinoderm species in aquaculture.
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  • 文章类型: Journal Article
    觉醒被认为是自然界中“最纯粹”的低代谢状态之一,因为它涉及有氧休眠,可以在没有复杂因素的情况下诱导和维持。为了保护自己免受高温等环境压力的动物,干旱,和食物短缺。然而,这种身体新陈代谢的转变给生存带来了新的挑战,包括从清醒中醒来后的氧化应激,有毒代谢物的积累,能源的变化,对免疫状态的调整,由于长时间不动而导致的肌肉萎缩,以及由于长时间的食物匮乏而导致的内脏器官退化。在这次审查中,我们总结了生理和代谢策略,关键监管因素,和用于动物的网络,以解决上述的动机的组成部分。此外,我们全面概述了主要物种在激励研究方面取得的进展,包括两栖动物,鱼,爬行动物,环节动物,软体动物,和棘皮动物,根据它们各自的进化位置进行分类。这种方法为比较分析提供了一个独特的视角,促进对不同生物群体的共同特征和独特特征的理解。
    Aestivation is considered to be one of the \"purest\" hypometabolic states in nature, as it involves aerobic dormancy that can be induced and sustained without complex factors. Animals that undergo aestivation to protect themselves from environmental stressors such as high temperatures, droughts, and food shortages. However, this shift in body metabolism presents new challenges for survival, including oxidative stress upon awakening from aestivation, accumulation of toxic metabolites, changes in energy sources, adjustments to immune status, muscle atrophy due to prolonged immobility, and degeneration of internal organs due to prolonged food deprivation. In this review, we summarize the physiological and metabolic strategies, key regulatory factors, and networks utilized by aestivating animals to address the aforementioned components of aestivation. Furthermore, we present a comprehensive overview of the advancements made in aestivation research across major species, including amphibians, fish, reptiles, annelids, mollusks, and echinoderms, categorized according to their respective evolutionary positions. This approach offers a distinct perspective for comparative analysis, facilitating an understanding of the shared traits and unique features of aestivation across different groups of organisms.
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  • 文章类型: Journal Article
    豌豆蟹,超家族Pinntheroidea,在短尾蟹中,它们在涉及犯罪和保护性共生的各种共生关系中都是例外。尽管该小组为海洋大型无脊椎动物的寄主转换和形态进化的进化比较研究提供了难得的机会,以前的系统发育研究集中在系统学上。这里,我们根据两个线粒体和六个核标记重建了Pinopheroidea最广泛的系统发育,目的是阐明宿主转换途径以及共生生活方式与选定的形态适应之间的相关性。宿主协会的祖先状态重建揭示了以犯罪主义形式的共生的单一起源。随后,微生境对洞穴或蠕虫管的偏好发生了变化,以及向保护性共生的转变,主要是在向软体动物内共生的转变中,导致了Pinnatheridae的辐射。发生了棘皮动物和被膜动物的进一步平行定殖,但并未导致广泛的多样化。除了在嗜血鹰嘴豆+Dissodactylus谱系中,经历了一次独特的向棘皮动物外生体的转变。第三个最大的进化,甲壳的形状和流动的脚足动物表明与共生生活方式(无论是犯罪还是保护性共生)有相当强的耦合。在从事保护性共生的物种中,这些特征的表型多样性更高,在共享相同主机从属关系的那些人之间在形式(或功能)上趋同。具有不同寄主隶属关系或共生生活方式的物种也可能以三种形态特征的形式表现出趋同,暗示了专业的共同适应价值。与具有可比物种多样性的共生古虾相比,总体上表现出更低的性状多样性。这可能合理地归因于形态学修饰的潜力差异,以在两组分析的性状中发挥额外的功能。主机切换频率越低,主机从属关系越不多样化,因此,在纯种动物中,进化史并不那么复杂。
    The pea crabs, superfamily Pinnotheroidea, are exceptional among brachyuran crabs in their diverse symbiotic associations involving both inquilinism and protective symbiosis. While this group presents a rare opportunity for evolutionary comparative study of host switching and morphological evolution in marine macroinvertebrates, previous phylogenetic studies have been focused on systematics. Here, we reconstructed the most extensive phylogeny of Pinnotheroidea based on two mitochondrial and six nuclear markers, with the aim of elucidating the host switching pathways and the correlation between symbiotic lifestyles and selected morphological adaptations. Ancestral state reconstruction of host association revealed a monophyletic origin of symbiosis in the form of inquilinism. Subsequent shifts in microhabitat preference for burrows or worm tubes, and the move to protective symbiosis, primarily in the switch to mollusc endosymbiosis, contributed to radiation in Pinnotheridae. Further parallel colonisations of echinoderms and tunicates occurred but did not lead to extensive diversification, except in the Clypeasterophilus + Dissodactylus lineage, which experienced a unique switch to echinoderm ectosymbiosis. The evolution of the third maxillipeds, carapace shape and ambulatory pereiopods suggests a rather strong coupling with the symbiotic lifestyle (whether inquilinism or protective symbiosis). Phenotypic diversity of these characters was higher among species engaged in protective symbiosis, with convergence in form (or function) among those sharing the same host affiliation. Species having different host affiliations or symbiotic lifestyles might also exhibit convergence in the form of the three morphological traits, suggesting a common adaptive value of the specialisations. Pinnotherid crabs overall exhibited a lower trait diversity than the also symbiotic palaemonid shrimps with comparable species diversity. This may plausibly be attributed to differences in potential for morphological modification to serve additional functions among the traits analysed in the two groups, the less frequent host switching and the less diverse host affiliations, and thus a less complicated evolutionary history in pinnotherids.
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  • 文章类型: Journal Article
    在2014年R/VKexue的科学考察中,一个属于AstrocharisKoehler属的新物种,1904年是从雅普海沟附近的海山收集的。Astrocharismargaritasp.11月。与Astrocharis的其他物种的区别在于以下特征:径向盾牌部分裸露或完全被多边形小骨覆盖,身体颜色是均匀的浅粉红色。最大似然树和贝叶斯树,基于COI的连接数据集,16S,和18S基因分析,表示不支持Astrocharis的单题,这表明该属需要修改。
    During the scientific expedition of the R/V Kexue in 2014, a new species belonging to the genus Astrocharis Koehler, 1904 was collected from a seamount near the Yap Trench. Astrocharis margarita sp. nov. is distinguished from the other species of Astrocharis by the following characters: radial shields are partly naked or completely covered by polygonal ossicles, and the body color is uniformly light pink. Maximum Likelihood Tree and Bayesian Tree, based on a concatenated dataset of COI, 16S, and 18S genes analyses, indicated that the monophyly of Astrocharis was not supported, which suggested the genus needs to be revised.
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  • 文章类型: Journal Article
    为了检测气候变化对黄海(YS)和东海(ECS)常见棘皮动物物种分布的潜在影响,应用物种分布模型(SDMs)。构建了合奏SDM,并在八个选定的常见棘皮动物物种中的六个中具有良好的模型性能。在未来的气候情景下,脆弱的星星,预计Amphioplus凹陷和海参Protankyrabidentata将在YS的西南地区扩展,ECS,以及YS和ECS的沿海地区,分别;脆性恒星Stegophiurasladeni,Amphiuradigitula和Amphiuravadicola可能会缩小南部分布区域的范围,并在北部扩展,呈现出向北移动的趋势。温度是影响后三种棘皮动物分布的最重要的环境变量。我们的发现将增进我们对气候变化对海洋物种分布影响的理解。
    To detect potential impacts of climate change on the distribution of common echinoderm species in the Yellow Sea (YS) and East China Sea (ECS), species distribution models (SDMs) were applied. Ensemble SDMs were constructed and were in good model performance for six of the eight selected common echinoderm species. Under future climate scenarios, the brittle stars Ophiopholis mirabilis, Amphioplus depressus and the sea cucumber Protankyra bidentata were projected to expand in the southwestern areas of the YS, the ECS, and the coastal areas of the YS and ECS, respectively; the brittle stars Stegophiura sladeni, Amphiura digitula and Amphiura vadicola will likely contract their ranges in the south distribution areas and expand in the north, showing a northward movement trend. Temperature was the most important environmental variable influencing the distribution of the latter three echinoderms. Our findings will improve our understanding of the impacts of climate change on marine species distributions.
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