通过水平基因转移(HGT)重组短DNA片段可以引入有益的等位基因,通过消极的上位造成基因组不和谐,并通过阳性上位产生适应性基因组合。对于非核心(附属)基因,负上位性成本可能是最小的,因为传入的基因没有与受体基因组共同进化,并且经常被观察为具有主要影响的紧密连锁盒.相比之下,核心基因组中的种间重组预计将是罕见的,因为破坏性等位基因替换可能会引入负上位性。那么,为什么同源重组在细菌基因组的核心中很常见?为了理解这个谜,我们利用一个特殊的模型系统,常见的肠道病原体空肠弯曲杆菌和大肠杆菌,以核心基因组中非常高的种间基因流动而闻名。不出所料,HGT确实破坏了共适应的等位基因配对,阴性上位的间接证据。然而,多个HGT事件能够恢复基因渗入等位基因之间的基因组共适应,即使在核心代谢基因中(例如,甲酸脱氢酶)。这些发现表明,即使是复杂的特征,遗传联盟可以解耦,转让,并独立恢复了新的遗传背景,促进了适应度峰之间的过渡。在这个例子中,两步重组过程与适应农业生态位的大肠杆菌相关。重要细菌之间的遗传交换塑造了微生物世界。从获得抗菌素抗性基因到有关细菌种类性质的基本问题,几十年来,这种强大的进化力量一直困扰着科学家。然而,物种之间基因的混合取决于一个悖论:一方面,通过赋予新的功能来促进适应;另一方面,可能引入不和谐的基因组合(阴性上位性),将被选择反对。采取跨学科的方法来分析肠道细菌弯曲杆菌的自然种群,长程混合剂的理想例子,我们证明,基因可以独立地跨物种边界转移,并在受体基因组中重新加入功能网络。通过扩大代谢能力并通过种间杂交促进生态位转移,两基因相互作用的积极影响似乎是适应性的。这挑战了传统观点,并强调了通过种间基因渗入进行多基因性状多步进化的可能性。
Recombination of short DNA fragments via horizontal gene transfer (HGT) can introduce beneficial alleles, create genomic disharmony through negative epistasis, and create adaptive gene combinations through positive epistasis. For non-core (accessory) genes, the negative epistatic cost is likely to be minimal because the incoming genes have not co-evolved with the recipient genome and are frequently observed as tightly linked cassettes with major effects. By contrast, interspecific recombination in the core genome is expected to be rare because disruptive allelic replacement is likely to introduce negative epistasis. Why then is homologous recombination common in the core of bacterial genomes? To understand this enigma, we take advantage of an exceptional model system, the common enteric pathogens Campylobacter jejuni and C. coli that are known for very high magnitude interspecies gene flow in the core genome. As expected, HGT does indeed disrupt co-adapted allele pairings, indirect evidence of negative epistasis. However, multiple HGT events enable recovery of the genome\'s co-adaption between introgressing alleles, even in core metabolism genes (e.g., formate dehydrogenase). These findings demonstrate that, even for complex traits, genetic coalitions can be decoupled, transferred, and independently reinstated in a new genetic background-facilitating transition between fitness peaks. In this example, the two-step recombinational process is associated with C. coli that are adapted to the agricultural niche.IMPORTANCEGenetic exchange among bacteria shapes the microbial world. From the acquisition of antimicrobial resistance genes to fundamental questions about the nature of bacterial species, this powerful evolutionary force has preoccupied scientists for decades. However, the mixing of genes between species rests on a paradox: 0n one hand, promoting adaptation by conferring novel functionality; on the other, potentially introducing disharmonious gene combinations (negative epistasis) that will be selected against. Taking an interdisciplinary approach to analyze natural populations of the enteric bacteria Campylobacter, an ideal example of long-range admixture, we demonstrate that genes can independently transfer across species boundaries and rejoin in functional networks in a recipient genome. The positive impact of two-gene interactions appears to be adaptive by expanding metabolic capacity and facilitating niche shifts through interspecific hybridization. This challenges conventional ideas and highlights the possibility of multiple-step evolution of multi-gene traits by interspecific introgression.