Acanthamoeba

棘阿米巴
  • 文章类型: Journal Article
    棘阿米巴,在各种环境中发现的广泛分布的自由生活的变形虫,是导致棘阿米巴角膜炎的机会病原体,可能导致失明的情况。然而,由于棘阿米巴复杂的生命周期,鉴定其致病性具有挑战性,适应不同环境的能力,可变毒力因子,以及与宿主免疫系统的复杂相互作用。此外,研究棘阿米巴致病性的有效模型的开发是有限的,阻碍了对其毒力和宿主相互作用的潜在机制的全面理解。这项研究的目的是使用猪眼球开发一种离体感染棘阿米巴的模型,并评估棘阿米巴分离株的致病性。根据裂隙灯和活检分析,开发的离体模型能够在3天内成功感染棘阿米巴。组织病理学染色显示,在该模型中,棘阿米巴的临床分离株表现出比环境分离株更大的角膜基质破坏和侵袭。我们的结果强调了离体猪眼模型在阐明棘阿米巴感染的发病机理及其对理解和管理棘阿米巴相关眼部疾病的潜在意义中的重要性。
    Acanthamoeba, a widely distributed free-living amoeba found in various environments, is an opportunistic pathogen responsible for causing Acanthamoeba keratitis, a condition that may lead to blindness. However, identifying the pathogenicity of Acanthamoeba is challenging due to its complex life cycle, ability to adapt to different environments, variable virulence factors, and intricate interactions with the host immune system. Additionally, the development of an effective model for studying Acanthamoeba pathogenicity is limited, hindering a comprehensive understanding of the mechanisms underlying its virulence and host interactions. The aim of this study was to develop an ex vivo model for Acanthamoeba infection using porcine eyeballs and to evaluate the pathogenicity of the Acanthamoeba isolates. Based on slit lamp and biopsy analysis, the developed ex vivo model is capable of successfully infecting Acanthamoeba within 3 days. Histopathological staining revealed that clinical isolates of Acanthamoeba exhibited greater corneal stroma destruction and invasion in this model than environmental isolates. Our results highlight the importance of an ex vivo porcine eye model in elucidating the pathogenesis of Acanthamoeba infection and its potential implications for understanding and managing Acanthamoeba-related ocular diseases.
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  • 文章类型: Journal Article
    棘阿米巴感染是一个严重的公共卫生问题,需要开发有效和安全的抗棘阿米巴化学疗法。聚(ADP-核糖)聚合酶(PARP)控制着大量的生物过程,比如DNA损伤修复,蛋白质降解和凋亡。多种PARP靶向化合物已被批准用于癌症治疗。然而,对PARP抑制剂治疗棘阿米巴的再利用知之甚少。
    在本研究中,我们试图通过进行抗棘阿米巴功效测定来填补这些知识空白,细胞生物学实验,生物信息学,和转录组学分析。
    使用棘阿米巴聚(ADP-核糖)聚合酶(PARPs)的同源模型,已批准药物的分子对接揭示了三种潜在的抑制化合物:奥拉帕尼,venadaparib和AZ9482。特别是,venadaparib表现出优异的对接得分(-13.71)和良好的预测结合自由能(-89.28kcal/mol),其次是AZ9482,其显示-13.20的对接得分和-92.13kcal/mol的结合自由能。值得注意的是,venadaparib中带正电荷的环丙胺在结合袋中建立了盐桥(通过E535)和氢键(通过N531)。为了比较,AZ9482被周围的芳族残基(包括H625、Y652、Y659和Y670)很好地堆叠。在对滋养体生存能力的评估中,AZ9482通过抑制棘阿米巴PARP活性表现出剂量和时间依赖性的抗滋养体作用,不同于奥拉帕利和韦纳帕利。膜联蛋白V-异硫氰酸荧光素/碘化丙啶凋亡测定显示AZ9482诱导滋养体坏死细胞死亡而不是凋亡。对AZ9482处理的棘阿米巴滋养体进行的转录组学分析显示了差异调节的蛋白质和基因的图谱,并发现AZ9482迅速上调滋养体的大量DNA损伤修复途径,有趣地下调了几个毒力基因。分析与DNA损伤修复途径相关的基因表达和嘌呤/嘧啶(AP)位点的速率表明AZ9482处理后棘阿米巴滋养体的DNA损伤功效和修复调节。
    集体,这些发现突出了AZ9482作为一种结构独特的PARP抑制剂,为推进抗棘阿米巴药物研究提供了有希望的原型。
    UNASSIGNED: Acanthamoeba infection is a serious public health concern, necessitating the development of effective and safe anti-Acanthamoeba chemotherapies. Poly (ADP-ribose) polymerases (PARPs) govern a colossal amount of biological processes, such as DNA damage repair, protein degradation and apoptosis. Multiple PARP-targeted compounds have been approved for cancer treatment. However, repurposing of PARP inhibitors to treat Acanthamoeba is poorly understood.
    UNASSIGNED: In the present study, we attempted to fill these knowledge gaps by performing anti-Acanthamoeba efficacy assays, cell biology experiments, bioinformatics, and transcriptomic analyses.
    UNASSIGNED: Using a homology model of Acanthamoeba poly (ADP-ribose) polymerases (PARPs), molecular docking of approved drugs revealed three potential inhibitory compounds: olaparib, venadaparib and AZ9482. In particular, venadaparib exhibited superior docking scores (-13.71) and favorable predicted binding free energy (-89.28 kcal/mol), followed by AZ9482, which showed a docking score of -13.20 and a binding free energy of -92.13 kcal/mol. Notably, the positively charged cyclopropylamine in venadaparib established a salt bridge (through E535) and a hydrogen bond (via N531) within the binding pocket. For comparison, AZ9482 was well stacked by the surrounding aromatic residues including H625, Y652, Y659 and Y670. In an assessment of trophozoites viability, AZ9482 exhibited a dose-and time-dependent anti-trophozoite effect by suppressing Acanthamoeba PARP activity, unlike olaparib and venadaparib. An Annexin V-fluorescein isothiocyanate/propidium iodide apoptosis assay revealed AZ9482 induced trophozoite necrotic cell death rather than apoptosis. Transcriptomics analyses conducted on Acanthamoeba trophozoites treated with AZ9482 demonstrated an atlas of differentially regulated proteins and genes, and found that AZ9482 rapidly upregulates a multitude of DNA damage repair pathways in trophozoites, and intriguingly downregulates several virulent genes. Analyzing gene expression related to DNA damage repair pathway and the rate of apurinic/apyrimidinic (AP) sites indicated DNA damage efficacy and repair modulation in Acanthamoeba trophozoites following AZ9482 treatment.
    UNASSIGNED: Collectively, these findings highlight AZ9482, as a structurally unique PARP inhibitor, provides a promising prototype for advancing anti-Acanthamoeba drug research.
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  • 文章类型: Case Reports
    致病性和自由生活的棘阿米巴在环境中广泛分布,据报道可引起角膜炎和普遍致命的脑炎。由棘阿米巴引起的原发性皮肤棘阿米巴病极为罕见,表现为孤立的坏死性皮肤病变,而不涉及角膜或中枢神经系统。皮肤棘阿米巴病通常发生在免疫功能低下的患者中,仅通过皮肤活检组织病理学分析可能会被忽视甚至误诊。这里,我们报告了一名感染HIV的63岁女性,患有口腔白斑4个月,并散布在全身的大面积皮肤溃疡2个月。通过皮肤标本的组织病理学分析,皮肤病变的原因尚不清楚,随后通过宏基因组下一代测序(mNGS)检测到棘阿米巴,这可能是皮肤损伤的原因。根据mNGS结果,病理学家随后回顾了以前的病理切片,发现了棘阿米巴滋养体,从而确定了病因,多药联合治疗后皮肤溃疡明显改善。棘阿米巴也是病原微生物的宿主。内共生体的存在增强了棘阿米巴的致病性,在这种情况下,没有其他病原体的报道。mNGS有助于快速诊断罕见皮肤病的病因,并可以指示共生微生物的存在或不存在。
    Pathogenic and free-living Acanthamoeba are widely distributed in the environment and have been reported to cause keratitis and universally fatal encephalitis. Primary cutaneous acanthamoebiasis caused by Acanthamoeba is exceedingly rare and presents as isolated necrotic cutaneous lesions without involvement of the cornea or central nervous system. Cutaneous acanthamoebiasis often occurs in immunocompromised patients and is likely overlooked or even misdiagnosed only by cutaneous biopsy tissue histopathological analysis. Here, we report a HIV-infected 63-year-old female with oral leukoplakia for 4 months and scattered large skin ulcers all over the body for 2 months. The cause of the cutaneous lesions was unclear through cutaneous specimens histopathological analysis, and subsequently Acanthamoeba were detected by metagenomic next-generation sequencing (mNGS), which may be the cause of cutaneous lesions. Based on the mNGS results, a pathologist subsequently reviewed the previous pathological slides and found trophozoites of Acanthamoeba so that the cause was identified, and the skin ulcers improved significantly after treatment with multi-drug combination therapy. Acanthamoeba is also a host of pathogenic microorganisms. The presence of endosymbionts enhances the pathogenicity of Acanthamoeba, and no other pathogens were reported in this case. mNGS is helpful for rapidly diagnosing the etiology of rare skin diseases and can indicate the presence or absence of commensal microorganisms.
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  • 文章类型: Journal Article
    棘阿米巴,一个自由生活的变形虫,常见于各种自然环境中,比如河流和土壤,以及在公共浴场,游泳池,还有下水道.棘阿米巴可引起人类的严重疾病,如肉芽肿性阿米巴性脑炎和棘阿米巴性角膜炎(AK)。AK,最知名的疾病,可通过影响角膜导致永久性视力障碍或失明。AK通常会影响忽略适当清洁习惯的隐形眼镜佩戴者。AK的症状包括上皮和基质破坏,角膜浸润,和剧烈的眼部疼痛,偶尔需要手术切除整个眼球。目前的AK治疗涉及每小时施用含有聚六亚甲基杀生物剂(PHMB)的滴眼剂。然而,研究表明,它们对耐药菌株无效。棘阿米巴可以在不利的环境中形成囊肿作为生存机制,尽管确切的机制仍然未知。我们的实验表明,钠P型ATP酶(ACA1_065450)与包膜密切相关。此外,各种封闭缓冲区,如MgCl2或NaCl,诱导P型ATP酶的表达。此外,我们用了ouabain,ATPase抑制剂,抑制Na+/K+离子泵,因此降低了棘阿米巴的包封率。我们的主要目标是为AK开发一种先进的治疗方法。我们预计,乌巴因和PHMB的组合在未来可能会成为针对AK的有效治疗方法。
    Acanthamoeba, a free-living amoeba, is commonly found in various natural environments, such as rivers and soil, as well as in public baths, swimming pools, and sewers. Acanthamoeba can cause severe illness such as granulomatous amoebic encephalitis and Acanthamoeba keratitis (AK) in humans. AK, the most recognized disease, can cause permanent visual impairment or blindness by affecting the cornea. AK commonly affects contact lens wearers who neglect proper cleaning habits. The symptoms of AK include epithelial and stromal destruction, corneal infiltrate, and intense ocular pain, occasionally necessitating surgical removal of the entire eyeball. Current AK treatment involves the hourly application of eye drops containing polyhexamethylene biocide (PHMB). However, studies have revealed their ineffectiveness against drug-resistant strains. Acanthamoeba can form cysts as a survival mechanism in adverse environments, though the exact mechanism remains unknown. Our experiments revealed that sodium P-type ATPase (ACA1_065450) is closely linked to encystation. In addition, various encystation buffers, such as MgCl2 or NaCl, induced the expression of P-type ATPase. Furthermore, we used ouabain, an ATPase inhibitor, to inhibit the Na+/K+ ion pump, consequently decreasing the encystation rate of Acanthamoeba. Our primary objective is to develop an advanced treatment for AK. We anticipate that the combination of ouabain and PHMB may serve as an effective therapeutic approach against AK in the future.
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  • 文章类型: Journal Article
    金属和类金属被用作单细胞真核生物对原核生物的掠夺性进食的武器。这篇综述强调了金属(类)生物利用度在地球历史过程中的作用,再加上真核发生和线粒体的进化,以追踪金属(类)捕食吞噬体的出现和使用作为喂养策略。棘阿米巴属和木偶属的成员使用金属,例如锌(Zn)和铜(Cu),可能还有准金属,吞噬后杀死它们的细菌猎物。我们提供了一个潜在的时间表,说明这些能力何时首次进化,以及它们如何与地球历史上金属生物利用度的感知变化相关。吞噬型真核生物的起源必须在大氧化事件(GOE)之后进行,这与氧化还原依赖性的金属(类)生物利用度修饰有关,以进行吞噬型中毒。然而,这种捕食机制预计进化得更晚-更接近多细胞后生动物的起源和免疫系统的进化发展。
    Metals and metalloids are used as weapons for predatory feeding by unicellular eukaryotes on prokaryotes. This review emphasizes the role of metal(loid) bioavailability over the course of Earth\'s history, coupled with eukaryogenesis and the evolution of the mitochondrion to trace the emergence and use of the metal(loid) prey-killing phagosome as a feeding strategy. Members of the genera Acanthamoeba and Dictyostelium use metals such as zinc (Zn) and copper (Cu), and possibly metalloids, to kill their bacterial prey after phagocytosis. We provide a potential timeline on when these capacities first evolved and how they correlate with perceived changes in metal(loid) bioavailability through Earth\'s history. The origin of phagotrophic eukaryotes must have postdated the Great Oxidation Event (GOE) in agreement with redox-dependent modification of metal(loid) bioavailability for phagotrophic poisoning. However, this predatory mechanism is predicted to have evolved much later - closer to the origin of the multicellular metazoans and the evolutionary development of the immune systems.
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  • 文章类型: Journal Article
    背景:棘阿米巴和肺炎克雷伯菌都是环境共生菌。最近,已观察到高粘肺炎克雷伯菌引起的临床危害。然而,这些微生物与高粘肺炎克雷伯菌的起源之间的相互作用尚未被报道。
    结果:这里,我们报告说,当使用印度墨水染色与棘阿米巴共培养时,细菌囊扩大,这种效果取决于寄生虫的数量。这种相互作用导致肺炎克雷伯菌后代荚膜多糖产量的增加,即使没有与棘阿米巴共培养。使用沉降测定和字符串测试检查胶囊的高粘膜粘度。我们还筛选了其他肺炎克雷伯菌血清型,包括K1,K2,K5和K20,使用印度墨水染色与棘阿米巴相互作用,并发现了相同的相互作用效应。
    结论:这些发现表明,棘阿米巴和肺炎克雷伯菌之间的相互作用可能对公共卫生和医院疾病控制造成有害后果,特别是高粘膜粘性肺炎克雷伯菌感染。
    Acanthamoeba and Klebsiella pneumoniae are both environmental commensals. Recently, clinical harm caused by hypermucoviscous K. pneumoniae has been observed. However, the interaction between these microbes and the origin of hypermucoviscous K. pneumoniae have not been reported.
    Here, we report that the bacterial capsule is enlarged when co-cultured with Acanthamoeba using India ink staining, and this effect depends on the number of parasites present. This interaction results in an enhancement of capsular polysaccharide production in the subsequent generations of K. pneumoniae, even without co-culturing with Acanthamoeba. The hypermucoviscosity of the capsule was examined using the sedimentation assay and string test. We also screened other K. pneumoniae serotypes, including K1, K2, K5, and K20, for interaction with Acanthamoeba using India ink staining, and found the same interaction effect.
    These findings suggest that the interaction between Acanthamoeba and K. pneumoniae could lead to harmful consequences in public health and nosocomial disease control, particularly hypermucoviscous K. pneumoniae infections.
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  • 文章类型: Journal Article
    棘阿米巴是一种机会性原生动物,在自然界中广泛存在,主要分布在土壤和水中。棘阿米巴通常以两种形式存在,滋养体和囊肿。滋养体阶段是生长和繁殖阶段,而囊肿阶段的特征是细胞静止。通常导致人类感染,初次感染后缺乏有效的单一疗法会导致慢性疾病。棘阿米巴可以感染多种人体组织,如皮肤,角膜,结膜,呼吸道,和生殖道,特别是当组织屏障受损时。此外,严重感染可引起棘阿米巴角膜炎,肉芽肿性阿米巴脑炎,皮肤,和肺部感染。近年来随着棘阿米巴感染的数量不断增加,棘阿米巴的致病性与主流临床治疗越来越相关.本文将从生物学特性方面对棘阿米巴感染的病原学特点进行详细的综述,分类,疾病,和致病机制,为诊断提供科学依据,治疗,和预防棘阿米巴感染。
    Acanthamoeba is an opportunistic protozoa, which exists widely in nature and is mainly distributed in soil and water. Acanthamoeba usually exists in two forms, trophozoites and cysts. The trophozoite stage is one of growth and reproduction while the cyst stage is characterized by cellular quiescence, commonly resulting in human infection, and the lack of effective monotherapy after initial infection leads to chronic disease. Acanthamoeba can infect several human body tissues such as the skin, cornea, conjunctiva, respiratory tract, and reproductive tract, especially when the tissue barriers are damaged. Furthermore, serious infections can cause Acanthamoeba keratitis, granulomatous amoebic encephalitis, skin, and lung infections. With an increasing number of Acanthamoeba infections in recent years, the pathogenicity of Acanthamoeba is becoming more relevant to mainstream clinical care. This review article will describe the etiological characteristics of Acanthamoeba infection in detail from the aspects of biological characteristic, classification, disease, and pathogenic mechanism in order to provide scientific basis for the diagnosis, treatment, and prevention of Acanthamoeba infection.
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  • 文章类型: Journal Article
    棘阿米巴角膜炎是一种罕见的角膜寄生虫感染,如果不及时诊断和治疗,可能导致永久性失明。我们收集了来自20个国家的棘阿米巴角膜炎的发病率数据,并计算了23,561例的年发病率。突尼斯和比利时的利率最低,也是印度最高的。我们分析了亚洲GenBank数据库中的3755个棘阿米巴序列,欧洲,北美,南美洲,和大洋洲,并将其基因分型为T1,T2,T3,T4,T5,T10,T11,T12和T15。许多基因型具有不同的特征,然而T4是最普遍的基因型。由于仍然缺乏对棘阿米巴的有效治疗,通过染色预防早期诊断,PCR,或体内共聚焦显微镜(IVCM)对病情的预后具有重要意义。IVCM是最推荐的早期检测棘阿米巴的方法。如果IVCM不可用,应使用PCR作为替代方案。
    Acanthamoeba keratitis is a rare parasitic infection of the cornea that can lead to permanent blindness if not diagnosed and treated promptly. We collected data on the incidences of Acanthamoeba keratitis from 20 countries and calculated an annual incidence of 23,561 cases, with the lowest rates in Tunisia and Belgium, and the highest in India. We analyzed 3755 Acanthamoeba sequences from the GenBank database across Asia, Europe, North America, South America, and Oceania and genotyped them into T1, T2, T3, T4, T5, T10, T11, T12, and T15. Many genotypes possess different characteristics, yet T4 is the most prevalent genotype. As efficient treatment against Acanthamoeba remains lacking, prevention from early diagnosis via staining, PCR, or in vivo confocal microscopy (IVCM) becomes significant for the condition\'s prognosis. IVCM is the most recommended approach for the early detection of Acanthamoeba. If IVCM is unavailable, PCR should be used as an alternative.
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  • 文章类型: Journal Article
    背景:棘阿米巴是全球流行的机会性寄生虫之一。目前,由于这种寄生虫的副作用和耐药性的出现,已经对使用纳米药物治疗棘阿米巴引起的疾病进行了大量研究。因此,本系统综述研究旨在评价基于纳米颗粒(NPs)的棘阿米巴疾病治疗新策略.
    方法:我们根据2000年至2022年之间以英文发表的文章设计了系统的综述。我们的搜索策略基于每个数据库的语法和特定标签,包括ScienceDirect,PubMed,Scopus,奥维德,还有Cochrane.从文章中,选择了那些有入选标准的人,并对其数据进行了提取和分析。
    结果:在这项研究中,选择了26项研究。金属纳米颗粒主要用于对抗棘阿米巴物种(80.7%)。19.2%的研究使用聚合物纳米粒子,和3.8%使用乳液纳米颗粒。大多数研究(96.1%)在体外进行,只有一项研究(3.8%)在体内进行。银NP是研究中使用最多的金属纳米颗粒。基于植物胶的稳定性,观察到抗棘阿米巴化合物对绿色合成纳米颗粒的最佳效果,加载柑橘类水果黄酮橙皮苷(HDN)和柚皮苷(NRG),浓度为50μg/mL时具有100%的生长抑制作用。
    结论:这项研究表明,装载有银和金纳米颗粒的氯己定和其他植物代谢物增加了这些纳米颗粒的抗Acanthambae活性。然而,基于植物树胶稳定化的绿色合成纳米粒子,富含柑橘类水果黄酮橙皮苷(HDN)和柚皮苷(NRG),表现出最好的抗刺槐效果。然而,应进行进一步的研究以确定其对人类使用的安全性.
    BACKGROUND: Acanthamoeba is one of the opportunistic parasites with a global prevalence. Currently, due to the side effects and the emergence of drug resistance to this parasite, much research has been performed on the use of nano-drugs to treat Acanthamoeba-caused diseases. Therefore, this systematic review study aims to evaluate new strategies for treating diseases caused by Acanthamoeba based on nanoparticles (NPs).
    METHODS: We designed a systematic review based on the articles published in English between 2000 and 2022. Our search strategy was based on syntax and specific tags for each database, including ScienceDirect, PubMed, Scopus, Ovid, and Cochrane. From the articles, those that had inclusion criteria were selected, and their data were extracted and analyzed.
    RESULTS: In this study, 26 studies were selected. Metallic nanoparticles were mostly used against the Acanthamoeba species (80.7%). 19.2% of the studies used polymeric nanoparticles, and 3.8% used emulsion nanoparticles. Most studies (96.1%) were performed in vitro, and only one study (3.8%) was carried out in vivo. Silver NPs were the most used metallic nanoparticles in the studies. The best effect of the anti-Acanthamoeba compound was observed for green synthesized nanoparticles based on stabilization by plant gums, loaded with citrus fruits flavonoids hesperidin (HDN) and naringin (NRG) with a 100% growth inhibition at a concentration of 50 μg/mL.
    CONCLUSIONS: This study showed that chlorhexidine and other plant metabolites loaded with silver and gold nanoparticles increase the anti-Acanthambae activity of these nanoparticles. However, green synthesized nanoparticles based on stabilization by plant gums, loaded with citrus fruits flavonoids hesperidin (HDN) and naringin (NRG), showed the best anti-Acanthambae effect. Nevertheless, further studies should be performed to determine their safety for human use.
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  • 文章类型: Journal Article
    棘阿米巴物种是最普遍的原生生物之一,广泛存在于土壤和水中,既是复制性的生态位又是传播的媒介。它们是人类最重要的细胞内病原体,导致棘阿米巴角膜炎(AK)并严重损害人类角膜。宿主内的同胞生活方式和抗变形虫微生物(ARM)促进水平基因转移(HGT)。然而,只有A.castellanii和A.polyphaga的基因组多样性已被广泛研究,致病机制仍然未知。因此,我们通过比较基因组检查了7种临床致病菌株,系统发育,和根茎基因镶嵌分析,以探索变形虫-共生体相互作用,可能有助于发病机制。遗传特征和系统发育分析表明,T3和T4分离株的“开放”状态之间的功能特征存在差异,这可能导致毒力和致病性的差异。通过比较基因组分析,我们确定了与毒力相关的潜在基因,如金属蛋白酶,层粘连蛋白结合蛋白,和HSP,是棘阿米巴属特有的。然后,分析棘阿米巴和潘多拉病毒之间的推定序列运输或马卡斯特兰病毒提供了病毒基因的最佳命中;在细菌中,假单胞菌的数量最显著。最简约的进化情景是在棘阿米巴和内共生体之间;尽管如此,在大多数情况下,场景更加复杂。此外,交换基因的差异仅限于同一家族。简而言之,这项研究提供了大量数据,表明棘阿米巴和ARM之间存在HGT,解释疾病的发生并挑战达尔文的真核进化概念。重要性棘阿米巴具有引起严重致盲性角膜炎的能力。尽管近年来这种现象的患病率有所增加,我们对潜在的机会致病机制的了解可能仍然不完整。在这项研究中,我们通过对临床分离株进行全面的全基因组学研究,强调了假单胞菌在发病途径中的重要性.水平基因转移事件有助于解释内共生体如何使棘阿米巴成为机会性病原体。我们的研究为未来研究临床菌株之间的致病性和相互作用的差异开辟了几个潜在的途径。
    Acanthamoeba species are among the most ubiquitous protists that are widespread in soil and water and act as both a replicative niche and vectors for dispersal. They are the most important human intracellular pathogens, causing Acanthamoeba keratitis (AK) and severely damaging the human cornea. The sympatric lifestyle within the host and amoeba-resisting microorganisms (ARMs) promotes horizontal gene transfer (HGT). However, the genomic diversity of only A. castellanii and A. polyphaga has been widely studied, and the pathogenic mechanisms remain unknown. Thus, we examined 7 clinically pathogenic strains by comparative genomic, phylogenetic, and rhizome gene mosaicism analyses to explore amoeba-symbiont interactions that possibly contribute to pathogenesis. Genetic characterization and phylogenetic analysis showed differences in functional characteristics between the \"open\" state of T3 and T4 isolates, which may contribute to the differences in virulence and pathogenicity. Through comparative genomic analysis, we identified potential genes related to virulence, such as metalloprotease, laminin-binding protein, and HSP, that were specific to the genus Acanthamoeba. Then, analysis of putative sequence trafficking between Acanthamoeba and Pandoraviruses or Acanthamoeba castellanii medusaviruses provided the best hits with viral genes; among bacteria, Pseudomonas had the most significant numbers. The most parsimonious evolutionary scenarios were between Acanthamoeba and endosymbionts; nevertheless, in most cases, the scenarios are more complex. In addition, the differences in exchanged genes were limited to the same family. In brief, this study provided extensive data to suggest the existence of HGT between Acanthamoeba and ARMs, explaining the occurrence of diseases and challenging Darwin\'s concept of eukaryotic evolution. IMPORTANCE Acanthamoeba has the ability to cause serious blinding keratitis. Although the prevalence of this phenomenon has increased in recent years, our knowledge of the underlying opportunistic pathogenic mechanism maybe remains incomplete. In this study, we highlighted the importance of Pseudomonas in the pathogenesis pathway using comprehensive a whole genomics approach of clinical isolates. The horizontal gene transfer events help to explain how endosymbionts contribute Acanthamoeba to act as an opportunistic pathogen. Our study opens up several potential avenues for future research on the differences in pathogenicity and interactions among clinical strains.
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