protein transport

蛋白质转运
  • 文章类型: Journal Article
    高尔基体的守望者相互粘附,形成堆叠,并排排列形成高尔基带。两种蛋白质,GRASP65和GRASP55,以前与水箱堆叠有关,被证明是高尔基带形成所必需的。
    Cisternae of the Golgi apparatus adhere to each other to form stacks, which are aligned side by side to form the Golgi ribbon. Two proteins, GRASP65 and GRASP55, previously implicated in stacking of cisternae, are shown to be required for the formation of the Golgi ribbon.
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  • 文章类型: Journal Article
    安全和有效的抗狂犬病疫苗在世界范围内被强烈地寻求。DNA疫苗已经显示出它们的功效和安全性,并在该领域占据了特殊的位置。比较了两种原型抗狂犬病DNA疫苗诱导病毒特异性抗体产生的潜力。一种载体包含密码子优化的基因,该基因具有狂犬病病毒糖蛋白的区域适应的共有序列。另一个在C末端与c-CD63溶酶体靶向基序融合表达相同的糖蛋白。来自免疫小鼠的血清样品的ELISA显示,c-CD63变体诱导更有效的抗体产生并使IgG2a/IgG1比率向Th2型免疫应答转变。结果使人们有理由相信,该方法成功应用于狂犬病糖蛋白可能有助于开发新一代抗狂犬病疫苗。
    Safe and effective anti-rabies vaccines are intensely sought worldwide. DNA vaccines have already shown their efficacy and safety and have occupied a special place in the field. Two prototype anti-rabies DNA vaccines were compared for the potential to induce virus-specific antibody production. One vector contained a codon-optimized gene with a territory-adapted consensus sequence of the rabies virus glycoprotein. The other one expressed the same glycoprotein in fusion with a c-CD63 lysosome targeting motif at the C terminus. ELISA of serum samples from immunized mice showed that the c-CD63 variant induced more efficient antibody production and shifted the IgG2a/IgG1 ratio towards the Th2-type immune response. The results gave grounds to believe that the approach successfully applied to the rabies glycoprotein may help to develop new-generation anti-rabies vaccines.
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  • 文章类型: Editorial
    暂无摘要。
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  • 文章类型: Journal Article
    我们先前使用正交高通量筛选来选择自发穿过合成脂质双层而没有双层破坏的肽。从文库中选择的许多12个残基的自发膜易位肽(SMTP)包含5个残基的共有基序,LRLLR在5-9号位置。我们假设保守的基序可能是易位的必要且足够的最小基序。为了测试这一点并探索自发性膜易位的机制,我们合成了LRLLRWC的七个精氨酸放置变体,并比较了它们的膜分配,易位,以及对其中一个父SMTP的扰动,称为“TP2”。几种基序变体肽以与TP2相似的速率易位到合成囊泡中。然而,含有选定基序的肽,LRLLRWC,不是最快的;序列上下文对易位效率也很重要。虽然这些肽都不能渗透双层,在较高的肽与脂质比率下,基序肽易位更快,表明双层扰动和/或合作相互作用对它们的易位很重要。另一方面,TP2随着其浓度的增加而变慢,表明TP2作为单体易位,并被膜中的横向相互作用抑制。TP2和LRLLR基序肽诱导脂质易位,表明脂质在双层中陪伴它们。其他基序肽不诱导脂质翻转,建议另一种机制。串联的基序比单独的基序更慢。具有较短和较长精氨酸侧链类似物的TP2变体比TP2更慢易位。总之,这些结果表明,亮氨酸和精氨酸的多种模式可以支持自发的膜易位,序列上下文对于基序的贡献很重要。因为图案并不简单,对自发性易位的累加贡献,新型SMTP的合理工程将仍然困难,提供了更多的理由来追求合成分子进化的SMTP发现。
    We previously used an orthogonal high-throughput screen to select peptides that spontaneously cross synthetic lipid bilayers without bilayer disruption. Many of the 12-residue spontaneous membrane translocating peptides (SMTPs) selected from the library contained a 5-residue consensus motif, LRLLR in positions 5-9. We hypothesized that the conserved motif could be a necessary and sufficient minimal motif for translocation. To test this and to explore the mechanism of spontaneous membrane translocation, we synthesized seven arginine placement variants of LRLLRWC and compared their membrane partitioning, translocation, and perturbation to one of the parent SMTPs, called \"TP2\". Several motif variant peptides translocate into synthetic vesicles with rates that are similar to TP2. However, the peptide containing the selected motif, LRLLRWC, was not the fastest; sequence context is also important for translocation efficiency. Although none of these peptides permeabilize bilayers, the motif peptides translocate faster at higher peptide to lipid ratios, suggesting that bilayer perturbation and/or cooperative interactions are important for their translocation. On the other hand, TP2 translocates slower as its concentration is increased, suggesting that TP2 translocates as a monomer and is inhibited by lateral interactions in the membrane. TP2 and the LRLLR motif peptide induce lipid translocation, suggesting that lipids chaperone them across the bilayer. The other motif peptides do not induce lipid flip-flop, suggesting an alternate mechanism. Concatenated motifs translocate slower than the motifs alone. Variants of TP2 with shorter and longer arginine side-chain analogs translocate slower than TP2. In summary, these results suggest that multiple patterns of leucine and arginine can support spontaneous membrane translocation, and that sequence context is important for the contribution of the motifs. Because motifs do not make simple, additive contributions to spontaneous translocation, rational engineering of novel SMTPs will remain difficult, providing even more reason to pursue SMTP discovery with synthetic molecular evolution.
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  • 文章类型: Journal Article
    逆转录病毒的强烈依赖性,如人类免疫缺陷病毒1型(HIV-1),在宿主细胞因子上的作用并不比运输(ESCRT)机制所需的内体分选复合物故意脱离时更明显。所产生的对逆转录病毒释放的有效抑制强调了理解ESCRT-HIV-1界面处的基本结构-功能关系的重要性。最近利用先进成像技术的研究有助于澄清这些关系,克服障碍,为ESCRT介导的病毒脱落提供一系列潜在模型。这里,我们在详细介绍ESCRT机制和HIV-1释放过程的先前工作的背景下讨论这些模型。为了提供进一步完善的模板,我们为ESCRT介导的HIV-1释放提出了一个新的工作模型,该模型调和了不同的和看似相互矛盾的研究.
    The strong dependence of retroviruses, such as human immunodeficiency virus type 1 (HIV-1), on host cell factors is no more apparent than when the endosomal sorting complex required for transport (ESCRT) machinery is purposely disengaged. The resulting potent inhibition of retrovirus release underscores the importance of understanding fundamental structure-function relationships at the ESCRT-HIV-1 interface. Recent studies utilizing advanced imaging technologies have helped clarify these relationships, overcoming hurdles to provide a range of potential models for ESCRT-mediated virus abscission. Here, we discuss these models in the context of prior work detailing ESCRT machinery and the HIV-1 release process. To provide a template for further refinement, we propose a new working model for ESCRT-mediated HIV-1 release that reconciles disparate and seemingly conflicting studies.
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  • 文章类型: Journal Article
    线粒体在细胞的生理稳态中起着关键作用,有助于许多细胞过程,包括生物能学,新陈代谢和细胞生与死。由于他们的基石作用,线粒体作为药理靶点受到了广泛的关注。外部线粒体整合膜转运蛋白(TSPO)由于其能够以高亲和力和特异性结合许多类别的药物而引起了很大程度的药理学兴趣。除了其特征明确的药物结合位点,TSPO具有额外的高亲和力配体结合位点,最初被确定为具有结合脂质胆固醇的能力,其被命名为胆固醇识别/相互作用氨基酸共有(CRAC)基序。我们实验室先前的研究发现了针对TSPO的CRAC基序的其他配体,这些配体能够有效抑制线粒体胆固醇转运和类固醇生物合成。TSPO已被很好地表征的过程。然而,所有这些化合物都具有胆固醇和类固醇激素常见的甾体骨架。在我们努力扩大对TSPO的CRAC主题的理解时,我们进行了旨在确定该基序的非甾体配体的研究。分子建模和大型化学文库的计算机筛选鉴定了一组化合物,随后在许多类固醇生成模型系统中对其进行了生物活性筛选。这些努力确定了能够有效抑制类固醇生成的非甾体CRAC配体家族,在更高的浓度下,促进细胞凋亡。此外,这个家族中最好的候选人在给大鼠服用时能够抑制睾酮合成,这表明这种新型的非甾体CRAC配体家族可以作为开发用于治疗类固醇过度生产疾病的药物的原型,如人类和动物的库欣综合征和类固醇细胞肿瘤。
    Mitochondria play a critical role in the physiological homeostasis of the cell, contributing to numerous cellular processes, including bioenergetics, metabolism and cell life and death. Owing to their keystone role, mitochondria have gained much attention as pharmacological targets. The outer mitochondrial integral membrane translocator protein (TSPO) has attracted a significant degree of pharmacological interest owing to its ability to bind a number of classes of drugs with high affinity and specificity. In addition to its well-characterized drug binding site, TSPO possess an additional high-affinity ligand binding site, originally identified for its ability to bind the lipid cholesterol, which was named the cholesterol recognition/interaction amino acid consensus (CRAC) motif. Previous investigations from our laboratory identified additional ligands targeted to TSPO\'s CRAC motif which are able to potently inhibit mitochondrial cholesterol transport and steroid biosynthesis, processes for which TSPO has been well-characterized. However, all of these compounds possessed the steroidal backbone common to cholesterol and steroid hormones. In our efforts to expand our understanding of TSPO\'s CRAC motif, we performed studies aimed at identifying non-steroidal ligands for this motif. Molecular modeling and in silico screening of large chemical libraries identified a panel of compounds which were subsequently screened for bioactivity in a number of steroidogenic model systems. These efforts identified a family of non-steroidal CRAC ligands able to potently inhibit steroidogenesis, and at higher concentrations, promote apoptosis. In addition, the best candidate in this family was able to suppress testosterone synthesis when administered to rats, indicating that this novel family of non-steroidal CRAC ligands may serve as prototypes for the development of drugs useful for treatment of diseases of steroid overproduction, such as Cushing\'s syndrome and steroidogenic cell tumors in humans and animals.
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  • 文章类型: Journal Article
    必须将流感病毒的HA(血凝素)募集到膜筏中,以发挥其在膜融合和病毒出芽中的功能。我们之前使用FRET显示了HA的两个移植物靶向特征的缺失,细胞质尾部的S-酰化和TMR(跨膜区)外部的疏水氨基酸VIL(Val-Ile-Leu),导致木筏关联减少。此外,VIL的交换,但S-酰化位点不会严重阻碍HA通过高尔基体的运输。在本研究中,我们进一步表征了TMR中不明确的信号。序列比较表明,VIL的亮氨酸残基可能是CCM(胆固醇共有基序)的一部分,已知CCM将胆固醇与七个跨膜受体结合。该信号还包含一个上的赖氨酸残基和色氨酸残基以及另一个TMR螺旋上的酪氨酸残基,并且在组2HA中是保守的。CCM中的突变阻碍了HA的高尔基定位处理,例如在内侧高尔基体中获得EndoH(内切糖苷酶H)抗性碳水化合物和TGN(反式高尔基体网络)中的蛋白水解裂解。HA进出中间高尔基体的转运延迟随突变而变化,表明不同的运输步骤受到影响。通过FRET分析的所有突变体也显示与质膜上的筏的结合减少。因此,HA的移植物靶向信号不仅涵盖疏水性,但也有芳香和正电荷,residents.我们推测与胆固醇的结合可能促进HA的细胞内转运和与移植物的结合。
    The HA (haemagglutinin) of influenza viruses must be recruited to membrane rafts to perform its function in membrane fusion and virus budding. We previously showed using FRET that deletion of the two raft-targeting features of HA, S-acylation at the cytoplasmic tail and the hydrophobic amino acids VIL (Val-Ile-Leu) in the outer part of the TMR (transmembrane region), lead to reduced raft association. In addition, exchange of VIL, but not of the S-acylation sites severely retards transport of HA through the Golgi. In the present study, we have further characterized the ill-defined signal in the TMR. A sequence comparison suggests that the leucine residue of VIL might be part of a CCM (cholesterol consensus motif) that is known to bind cholesterol to seven-transmembrane receptors. The signal also comprises a lysine residue and a tryptophan residue on one and a tyrosine residue on another TMR helix and is conserved in group 2 HAs. Mutations in the CCM retard Golgi-localized processing of HA, such as acquisition of Endo H (endoglycosidase H)-resistant carbohydrates in the medial Golgi and proteolytic cleavage in the TGN (trans-Golgi network). The delay in transport of HA to and from the medial Golgi varied with the mutation, suggesting that different transport steps are affected. All mutants analysed by FRET also showed reduced association with rafts at the plasma membrane. Thus the raft-targeting signal of HA encompasses not only hydrophobic, but also aromatic and positively charged, residues. We speculate that binding to cholesterol might facilitate intracellular transport of HA and association with rafts.
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  • 文章类型: Journal Article
    外囊复合体是一个多亚基进化保守的复合体,最初被证明主要与囊泡向质膜的转运有关。最近的一份报告(Kulich等人。,2013年交通;在新闻中)揭示了AtEXO70B1,拟南芥植物外囊复合体的多个亚基之一,与自噬相关的Atg8f蛋白共同转运至液泡。该途径不涉及高尔基体。AtEXO70B1和Atg8f的共定位表明这两种蛋白质都一起转运到液泡中,或者,或者,Atg8与位于AtEXO70B1多肽内的推定的Atg8相互作用基序(AIM)结合,显然为运输到液泡的自噬复合物形成了束缚复合物。在本增编中,通过使用生物信息学方法,我们显示AtEXO70B1以及拟南芥EXO70外囊亚基的另外20个旁系同源物各自具有一个或多个AIM,其共有序列暗示它们与Atg8的高保真结合。这表明自噬机制强烈参与组装,运输,显然还有AtEXO70B1的功能以及外囊亚复合物。
    The exocyst complex is a multi-subunits evolutionary conserved complex, which was originally shown to be primarily associated with vesicular transport to the plasma membrane. A recent report (Kulich et al., 2013 Traffic; In Press) revealed that AtEXO70B1, one of the multiple subunits of the exocyst complex of Arabidopsis thaliana plants, is co-transported with the autophagy-associated Atg8f protein to the vacuole. This pathway does not involve the Golgi apparatus. The co-localization of AtEXO70B1 and Atg8f suggests either that both of these proteins are co-transported together to the vacuole or, alternatively, that Atg8 binds to a putative Atg8 interacting motif (AIM) located within the AtEXO70B1 polypeptide, apparently forming a tethering complex for an autophagic complex that is transported to the vacuole. In the present addendum, by tooling a bioinformatics approach, we show that AtEXO70B1 as well as the additional 20 paralogs of Arabidopsis EXO70 exocyst subunits each possess one or more AIMs whose consensus sequence implies their high fidelity binding to Atg8. This indicates that the autophagy machinery is strongly involved in the assembly, transport, and apparently also the function of AtEXO70B1 as well as the exocyst sub complex.
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  • 文章类型: Journal Article
    Water passes through cell membranes relatively slowly by diffusion. In order to maintain water homeostasis, the rapid and specific regulation of cellular water flow is mediated by the aquaporin (AQP) family of membrane protein water channels. The wide range of tissues that are known to express AQPs is reflected by their involvement in many physiological processes and diseases; thirteen human AQPs have been identified to date and the majority are highly specific for water while others show selectivity for water, glycerol and other small solutes. Receptor mediated translocation, via hormone activation, is an established method of AQP regulation, especially for AQP2. There is now an emerging consensus that the rapid and reversible translocation of other AQPs from intracellular vesicles to the plasma membrane, triggered by a range of stimuli, confers altered membrane permeability thereby acting as a regulatory mechanism. This review examines the molecular components that may enable such AQP regulation; these include cytoskeletal proteins, kinases, calcium and retention or localization signals. Current knowledge on the dynamic regulation of sub-cellular AQP translocation in response to a specific trigger is explored in the context of the regulation of cellular water flow.
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  • 文章类型: Journal Article
    最初被确定为必需的前mRNA剪接因子,非POU域,八聚体结合蛋白(p54nrb)和PTB相关RNA剪接因子(PSF)也是类固醇受体的共抑制因子。p54nrb和PSF调控基因转录的机制尚不清楚。p54nrb和PSF都包含蛋白磷酸酶1(PP1)共有结合RVxF基序,表明PP1可能调节p54nrb和PSF的磷酸化状态,从而调节它们在基因转录中的功能。在这份报告中,我们证明PP1与p54nrb和PSF形成蛋白质复合物。PP1仅在p54nrb中与RVxF基序直接交互,但不是在PSF。与PP1的结合导致体内p54nrb和PSF的去磷酸化以及它们的转录抑制物活性的丧失。使用CD44小基因作为报告基因,我们显示PP1调节p54nrb和PSF选择性剪接活性,这些活性决定外显子跳跃与包含在最终的成熟RNA中用于翻译。此外,p54nrb和PSF的转录抑制和RNA剪接活性的变化与p54nrb和PSF与转录抑制因子如Sin3A和组蛋白脱乙酰酶1以及RNA剪接因子如U1A和U2AF的蛋白质相互作用的变化相关。此外,我们证明了RVxF基序在PSF中的一种新功能,该功能增强了其与PP1无关的协同抑制和RNA剪接活性。我们得出的结论是,RVxF基序在控制p54nrb和PSF在基因转录调控中的多功能特性中起着重要作用。
    Originally identified as essential pre-mRNA splicing factors, non-POU-domain-containing, octamer binding protein (p54nrb) and PTB-associated RNA splicing factor (PSF) are also steroid receptor corepressors. The mechanisms by which p54nrb and PSF regulate gene transcription remain unclear. Both p54nrb and PSF contain protein phosphatase 1 (PP1) consensus binding RVxF motifs, suggesting that PP1 may regulate phosphorylation status of p54nrb and PSF and thus their function in gene transcription. In this report, we demonstrated that PP1 forms a protein complex with both p54nrb and PSF. PP1 interacts directly with the RVxF motif only in p54nrb, but not in PSF. Association with PP1 results in dephosphorylation of both p54nrb and PSF in vivo and the loss of their transcriptional corepressor activities. Using the CD44 minigene as a reporter, we showed that PP1 regulates p54nrb and PSF alternative splicing activities that determine exon skipping vs. inclusion in the final mature RNA for translation. In addition, changes in transcriptional corepression and RNA splicing activities of p54nrb and PSF are correlated with alterations in protein interactions of p54nrb and PSF with transcriptional corepressors such as Sin3A and histone deacetylase 1, and RNA splicing factors such as U1A and U2AF. Furthermore, we demonstrated a novel function of the RVxF motif within PSF that enhances its corepression and RNA splicing activities independent of PP1. We conclude that the RVxF motifs play an important role in controlling the multifunctional properties of p54nrb and PSF in the regulation of gene transcription.
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