Biofilm formation by Pseudomonas aeruginosa is primarily responsible for chronic wound and lung infections in humans. These infections are persistent owing to the biofilm\'s high tolerance to antimicrobials and constantly changing environmental factors. Understanding the mechanism governing biofilm formation can help to develop therapeutics explicitly directed against the molecular markers responsible for this process. After numerous years of research, many genes responsible for both in vitro and in vivo biofilm development remain unidentified. However, there is no \"all in one\" complete in vivo or in vitro biofilm model. Recent findings imply that the shift from planktonic bacteria to biofilms is a complicated and interrelated differentiation process. Research on the applications of omics technologies in P. aeruginosa biofilm development is ongoing, and these approaches hold great promise for expanding our knowledge of the mechanisms of biofilm formation. This review discusses the different factors that affect biofilm formation and compares P. aeruginosa biofilm formation using the omics approaches targeting essential biological macromolecules, such as DNA, RNA, Protein, and metabolome. Furthermore, we have outlined the application of currently available omics tools, such as genomics, proteomics, metabolomics, transcriptomics, and integrated multi-omics methodologies, to understand the differential gene expression (biofilm vs. planktonic bacteria) of P. aeruginosa biofilms.

The dinoflagellate Noctiluca scintillans is often reported as a worldwide HAB species and caused severe financial losses to local aquaculture. In this review, we summarized the temporal and geographical distribution of its HABs in China, as well as its position in the plankton structure. Increasing N. scintillans HABs, both frequency and coverage, have broken out in almost all Chinese coastal regions mainly from April to June, with short-term and small coverage blooms as the primary type. The HAB period seems to shift with age and latitude. Recently, increasing abundance and dominance of N. scintillans were also reported in plankton communities in Chinese coastal waters, with multiple environmental factors related. In particular, trophic relationships may play an important role in its dominance and outbreaks of HABs. However, how N. scintillans became a dominant species in China and the mechanisms responsible for its HABs require further study.

This review considers the interaction of microplastics (MPs)/nanoplastics (NPs) and co-existing contaminants, including organic contaminants, potentially toxic elements (PTEs), and metal/metal-oxide nanoparticles. Stronger adsorption between plastic particles and co-existing contaminants can either facilitate or prevent more contaminants to enter plankton. The characteristics of MPs/NPs, such as polymer type, size, functional groups, and weathering, affect combined effects. Mixture toxicity is affected by those factors simultaneously and also affected by the type of co-existing contaminants, their concentrations, exposure time, dissolved organic matter, and surfactant. For co-exposure involving organics and metal nanoparticles, marine Skeletonema costatum generally had antagonistic effects, while marine Chlorella pyrenoidosa, Platymonas subcordiformis, and Tetraselmis chuii, showed synergistic effects. For co-exposure involving organics and PTEs, both Chlorella sp. and Microcystis aeruginosa generally demonstrated antagonistic effects. Freshwater Chlorella reinhardtii and Scenedesmus obliquus had synergistic effects for co-exposure involving metal/metal oxide nanoparticles. Zooplankton shows more unpredicted sensitivity towards the complex system. Different co-existing contaminants have different metabolism pathways. Organic contaminants could be biodegraded, which may enhance or alleviate mixture toxicity. PTEs could be adsorbed and desorbed under changing environments, and further affect the combined effects. The presence of metal/metal-oxide nanoparticles is more complicated, since some may release ion metals, increasing contaminant composition.

The misuse and mismanagement of antibiotics have made the treatment of bacterial infections a challenge. This challenge is magnified when bacteria form biofilms, which can increase bacterial resistance up to 1000 times. It is desirable to develop anti-infective materials with antibacterial activity and no resistance to drugs. With the rapid development of nanotechnology, anti-infective strategies based on metal and metal oxide nanomaterials have been widely used in antibacterial and antibiofilm treatments. Here, this review expounds on the state-of-the-art applications of metal and metal oxide nanomaterials in bacterial infective diseases. A specific attention is given to the antibacterial mechanisms of metal and metal oxide nanomaterials, including disrupting cell membranes, damaging proteins, and nucleic acid. Moreover, a practical antibiofilm mechanism employing these metal and metal oxide nanomaterials is also introduced based on the composition of biofilm, including extracellular polymeric substance, quorum sensing, and bacteria. Finally, current challenges and future perspectives of metal and metal oxide nanomaterials in the anti-infective field are presented to facilitate their development and use.

Microplastics, a new class of environmental pollutants, accumulates in the environment at an uncontrollable rate, which threatens aquatic organisms. Plankton are the basis of food webs and play a significant role in the material circulation and energy flow of aquatic ecosystems. Plankton are sensitive to various environmental pollutants. It is necessary to investigate the impacts of microplastics on plankton. Here, we analzyed the sources and characteristics of microplastics, and the current state of microplastic pollution in aquatic ecosystem. The direct and indirect harmful effects of microplastics on aquatic organisms were elaborated. Then, we focused on the potential consequences of microplastics on phytoplankton and zooplankton species from different scales, ranging from individual, population, to community level. With respect to plankton organisms, few studies were carried out on genomics and proteomics from the microcosmic perspective, and on popu-lation and community responses from the macroscopic aspect. This review would provide references for further studies.
微塑料作为一种新型的环境污染物,大量存在于水环境中,给水生生物带来了极大的危害。浮游生物是水生食物链的基础,是水生生态系统物质循环和能量流动的重要环节;同时,浮游生物也是对各种环境污染物最敏感的类群。了解微塑料对浮游生物的影响是评价其生态风险的重要依据。本文介绍了环境中微塑料来源、特征及水生态系统微塑料污染现状,阐述了微塑料对水生生物的直接和间接危害,并重点聚焦于浮游植物和浮游动物,从个体、种群和群落的层次详细总结了微塑料的影响及其作用机制。最后,本文指出当前针对浮游生物微观基因和蛋白质组学,以及宏观种群和群落响应等方面的研究还非常缺乏,为今后开展微塑料危害研究提供参考。.

Mesocosms are real-world environmental science tools for bridging the gap between laboratory-scale experiments and actual habitat studies on ecosystem complexities. These experiments are increasingly being applied in understanding the complex impacts of heavy metals, ocean acidification, global warming, and oil spills. The insights of the present review indicate how metals and metal-bound activities impact on various aspects of ecological complexities like prey predator cues, growth, embryonic development, and reproduction. Plankton and benthos are used more often over fish and microbes owing to their smaller size, faster reproduction, amenability, and repeatability during mesocosm experiments. The results of ocean acidification reveal calcification of plankton, corals, alteration of pelagic structures, and plankton blooms. The subtle effect of oil spills is amplified on sediment microorganisms, primary producers, and crustaceans. An overview of the mesocosm designs over the years indicates that gradual changes have evolved in the type, size, design, composition, parameters, methodology employed, and the outputs obtained. Most of the pelagic and benthic mesocosm designs involve consideration of interactions within the water columns, between water and sediments, trophic levels, and nutrient rivalry. Mesocosm structures are built considering physical processes (tidal currents, turbulence, inner cycling of nutrients, thermal stratification, and mixing), biological complexities (population, community, and ecosystem) using appropriate filling containers, and sampling facilities that employ inert materials. The principle of design is easy transportation, mooring, deployment, and free floating structures besides addressing the unique ecosystem-based science problems. The evolution of the mesocosm tools helps in understanding further advancement of techniques and their applications in marine ecosystems.

Microplastics are abundant and widespread in the marine environment. They are a contaminant of global environmental and economic concern. Due to their small size a wide range of marine species, including zooplankton can ingest them. Research has shown that microplastics are readily ingested by several zooplankton taxa, with associated negative impacts on biological processes. Zooplankton is a crucial food source for many secondary consumers, consequently this represents a route whereby microplastic could enter the food web and transfer up the trophic levels. In this review we aim to: 1) evaluate the current knowledge base regarding microplastic ingestion by zooplankton in both the laboratory and the field; and 2) summarise the factors which contribute to the bioavailability of microplastics to zooplankton. Current literature shows that microplastic ingestion has been recorded in 39 zooplankton species from 28 taxonomic orders including holo- and meroplanktonic species. The majority of studies occurred under laboratory conditions and negative effects were reported in ten studies (45%) demonstrating effects on feeding behaviour, growth, development, reproduction and lifespan. In contrast, three studies (14%) reported no negative effects from microplastic ingestion. Several physical and biological factors can influence the bioavailability of microplastics to zooplankton, such as size, shape, age and abundance. We identified that microplastics used in experiments are often different to those quantified in the marine environment, particularly in terms of concentration, shape, type and age. We therefore suggest that future research should include microplastics that are more representative of those found in the marine environment at relevant concentrations. Additionally, investigating the effects of microplastic ingestion on a broader range of zooplankton species and life stages, will help to answer key knowledge gaps regarding the effect of microplastic on recruitment, species populations and ultimately broader economic consequences such as impacts on shell- and finfish stocks.

The marine oligotrich ciliate Strombidium sulcatum, the best known marine oligotrich of the marine microozoplankton, was first cultured in Villefranche-sur-Mer 35 years ago. Cultures were maintained from 1983 to 2003 and used in 22 studies investigating a very wide variety of questions. Here we review the major findings of these studies and underline their contributions to our knowledge of planktonic ciliate ecology and microbial ecology in general. We conclude with the observation that while ecophysiology has apparently fallen out of fashion, culture work will likely return as an invaluable resource in our present \'omics\' era.

BACKGROUND: Infectious conditions of the middle ear are a common and significant cause of morbidity and mortality worldwide. Systemic antibiotics are frequently used, but their effectiveness will depend on whether an adequate antibiotic concentration is achieved in the middle ear; this is especially important in biofilm infections such as otitis media with effusion (OME), where high antibiotic concentrations are typically required for effective treatment.
OBJECTIVE: This review examines what antibiotic levels can be reached in the middle ear with oral administration, as a means of guiding rational antibiotic choice in the clinic and future research, and to determine whether levels high enough for biofilm eradication are reached.
METHODS: A literature search of studies measuring levels of antibiotics in the plasma and in the middle ear after oral administration was conducted. These levels were compared to the minimum inhibitory concentrations (MIC) provided by the European Committee for Antimicrobial Susceptibility Testing (EUCAST) to determine if antibiotic doses were reaching sufficient levels to inhibit planktonic bacteria. The middle ear concentrations were then calculated as a multiple of the MIC to determine if the concentrations were reaching biofilm eradication concentrations (typically up to 1000×MIC).
RESULTS: The highest antibiotic levels against Staphylococcus aureus reach 8.3×MIC, against Moraxella catarrhalis 33.2×MIC, against Haemophilus influenzae 31.2×MIC, and against Streptococcus pneumoniae 46.2×MIC. The macrolide antibiotics reach higher levels in the middle ear than in plasma.
CONCLUSIONS: Orally administered antibiotics reach levels above the MIC in the middle ear. However, they do not reach levels that would be likely to eradicate biofilms.

Arsenobetaine is one of the major organoarsenic compounds found in aquatic organisms, including seafood and fish meant for human consumption. It has been widely studied over the last 50 years because of its non-toxic properties, and its origin is postulated to be at bottom of the aquatic food chains. The present review focuses on arsenobetaine formation in marine and freshwater plankton, comparing the arsenic compounds found in the different plankton organisms, and the methods used to assess arsenic speciation. The main findings indicate that in the marine environment, phytoplankton and micro-algae contain arsenosugars, with the first traces of arsenobetaine appearing in herbivorous zooplankton, and becoming a major arsenic compound in carnivorous zooplankton. Freshwater plankton contains less arsenobetaine than their marine relatives, with arsenosugars dominating. The possible role and formation pathways of arsenobetaine in plankton organisms are reviewed and the literature suggests that arsenobetaine in zooplankton comes from the degradation of ingested arsenosugars, and is selectively accumulated by the organism to serve as osmolyte. Several arsenic compounds such as arsenocholine, dimethylarsinoylacetate or dimethylarsinoylethanol that are intermediates of this pathway have been detected in plankton. The gaps in research on arsenobetaine in aquatic environments are also addressed: primarily most of the conclusions are drawn on culture-based experiments, and few data are present from the natural environment, especially for freshwater ecosystems. Moreover, more data on arsenic in different zooplankton species would be helpful to confirm the trends observed between herbivorous and carnivorous organisms.