Non-covalent

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  • 文章类型: Journal Article
    使用纳米级尺寸的金属基底,表面增强拉曼散射(SERS)是一种增强生物分子拉曼信号的技术。包括传感材料在内的众多行业,吸附和医疗设备,使用纳米材料,如纳米笼和纳米簇。为了发现一种可能的新型传感器平台,包括一个小的金属簇和一个弯曲的刚性基板,我们使用密度泛函理论(DFT)模拟来探索甘脲(GLC)的吸附,一种潜在的药物中间体,在纯氧化镁笼(Mg12O12)上。该明确定义的笼用作(i)可以使用的确切可能结构以及(ii)MgO纳米结构的一般模型。我们还研究了单Al掺杂的Mg12O12纳米笼版本Mg11AlO12。所有计算均在理论的M06-2X水平进行。GLC通过强的供体-受体相互作用与Mg12O12纳米笼结合。吸附释放-45.80kcalmol-1的能量。由于铝掺杂,GLC-Mg11AlO12的能隙(1.91eV)从GLC-Mg12O12的能隙(4.28eV)减小,因此GLC-Mg11AlO12的电导率增加。纳米笼电导率的电子变化可以转化为电信号,该电信号可以用于检测药物分析物的存在。此外,当GLC分子存在时,纳米笼的功函数也降低。MgO纳米笼,我们得出结论,是一个功函数类型以及可能的电子传感器GLC药物检测。与Mg12O12恢复时间相比,从Mg11AlO12表面的GLC解吸恢复得更快。进行本研究中评估的AIM和NCI以帮助分析复合物的电子结构。我们的发现为Mg11AlO12纳米结构用于药物识别铺平了道路。
    Using metal substrates that are nanoscale in size, surface-enhanced Raman scattering (SERS) is a technique for enhancing the Raman signal of biomolecules. Numerous industries including sensing materials, adsorption and medical devices, use nanomaterials like nanocages and nanoclusters. To discover a possible novel sensor platform involving a small metal cluster and a curved rigid substrate, we used density functional theoretical (DFT) simulations to explore the adsorption of glycoluril (GLC), a prospective drug intermediate, on a pure magnesium oxide cage (Mg12O12). This well defined cage was used as (i) an exact probable structure that could be used as well as (ii) a general model for MgO nanostructures. We also investigated the mono Al-doped Mg12O12 nanocage version Mg11AlO12. All computations were performed at the M06-2X level of theory. The GLC binds to the Mg12O12 nanocage by way of strong donor-acceptor interactions. The adsorption is releasing - 45.80 kcal mol-1 of energy. Due to Al doping, the energy gap of GLC-Mg11AlO12 (1.91 eV) is reduced from that of GLC-Mg12O12 (4.28 eV) and hence there is an increase in electrical conductivity of GLC-Mg11AlO12. The electronic change in the nanocage\'s conductivity can be transformed into an electrical signal which can be used to detect the presence of the drug analyte. In addition, when a GLC molecule is present, the work function of the nanocage is also reduced. The MgO nanocage, we conclude, is a work function type as well as a possible electronic sensor for GLC drug detection. GLC desorption from the Mg11AlO12 surface recovers more quickly in comparison with Mg12O12 recovery time. The AIM and NCIs assessed in this study were performed to help analyze the electronic structures of the complexes. Our findings pave the possibility for Mg11AlO12 nanostructures to be used in drug recognition.
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  • 文章类型: Journal Article
    The nature of non-covalent interactions in self-assembling systems is a topic that has aroused great attention in literature. In this field, the 1,3,5-triazinane-2,4,6-trione or cyanuric acid (CA) is one of the most widely used molecules to formulate self-assembled materials or monolayers. In the present work, a variety of molecular aggregates of CA are examined using three different DFT functionals (B3LYP, B3LYP-D3, and ω-B97XD) in the framework of the quantum theory of atoms in molecules (QTAIM) and natural bond orbital (NBO) analysis. Herein, a step by step aggregation path is proposed and the origin of cooperative effects is also examined. It is shown that a greater cooperativity is not always associated with a greater binding energy, and the greatest cooperative effect occurs with highly directional hydrogen bonds. The intramolecular charge transfers play a key role in this effect. Graphical abstract The noncovalent interactions in cyanuric acid supramolecules were analyzed. The calculations provide insights into the self-assembly steps from dimers to rosette-like motif. The complexes with collinear hydrogen bonds show positive cooperativity, while in the arrangement with double hydrogen bonds the cooperative effect is essentially zero.
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