Long noncoding RNAs

长链非编码 RNA
  • 文章类型: Journal Article
    许多研究支持以下观点:长链非编码RNA(lncRNA)显着参与心肌梗塞(MI)后心肌细胞(CM)再生的过程。本研究旨在系统综述lncRNAs通过促进MI后CM增殖在心脏再生中的新作用。此外,这篇综述总结了lncRNAs诱导心脏再生的潜在靶标和潜在机制,建议利用lncRNAs作为减轻MI损伤的创新治疗靶点。我们搜查了PubMed,Scopus,和WebofScience数据库用于研究在MI后心脏再生中起作用的lncRNAs。我们使用了包括MI在内的搜索词,lncRNAs,CM,和扩散。直到2023年6月11日发表的相关英文文章根据纳入和排除标准进行了系统审查。初步确定共361种出版物,在应用纳入和排除标准后,本系统综述纳入了9篇文章.这些研究调查了关键lncRNAs在MI后心脏再生中的作用,包括5个上调和4个下调的lncRNAs。作为竞争性内源性RNA是lncRNAs通过与靶microRNAs结合调节参与CM增殖的基因的主要作用之一。大大增加CM增殖的主要分子过程是那些打开Hippo/YAP1,PI3K/Akt,JAK2-STAT3和E2F1-ECRAR-ERK1/2信号通路。本系统综述强调了lncRNAs在MI后心脏再生中的重要作用及其对CM增殖的影响。研究结果表明,lncRNAs可以作为旨在增强心脏功能的治疗干预的潜在靶标。
    Many studies support the idea that long noncoding RNAs (lncRNAs) are significantly involved in the process of cardiomyocyte (CM) regeneration following a myocardial infarction (MI). This study aimed to systematically review the emerging role of lncRNAs in cardiac regeneration by promoting CM proliferation after MI. Furthermore, the review summarized potential targets and the underlying mechanisms of lncRNAs to induce heart regeneration, suggesting utilizing lncRNAs as innovative therapeutic targets for mitigating MI injuries. We searched the PubMed, Scopus, and Web of Science databases for studies on lncRNAs that play a role in heart regeneration after MI. We used search terms that included MI, lncRNAs, CM, and proliferation. Relevant English articles published until June 11, 2023, were systematically reviewed based on inclusion and exclusion criteria. A total of 361 publications were initially identified, and after applying the inclusion and exclusion criteria, nine articles were included in this systematic review. These studies investigated the role of critical lncRNAs in cardiac regeneration after MI, including five upregulated and four downregulated lncRNAs. Acting as a competitive endogenous RNA is one of the main roles of lncRNAs in regulating genes involved in CM proliferation through binding to target microRNAs. The main molecular processes that greatly increase CM proliferation are those that turn on the Hippo/YAP1, PI3K/Akt, JAK2-STAT3, and E2F1-ECRAR-ERK1/2 signaling pathways. This systematic review highlights the significant role of lncRNAs in heart regeneration after MI and their impact on CM proliferation. The findings suggest that lncRNAs could serve as potential targets for therapeutic interventions aiming to enhance cardiac function.
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  • 文章类型: Journal Article
    皮肤病,影响外皮系统,涉及多种分子机制,如细胞增殖,凋亡,炎症和免疫反应。长链非编码RNA,特别是转移相关的肺腺癌转录本1(MALAT1),是基因表达的关键调节因子。MALAT1影响炎症反应,免疫细胞功能和信号通路,影响各种生理和病理过程,包括皮肤病。在牛皮癣等皮肤病中观察到MALAT1的失调,特应性皮炎和系统性红斑狼疮。然而,其确切作用尚不清楚。这篇综述巩固了MALAT1对皮肤生物学和病理学影响的知识,强调其在皮肤病中的潜在诊断和治疗意义。
    [方框:见正文]。
    Dermatologic disorders, affecting the integumentary system, involve diverse molecular mechanisms such as cell proliferation, apoptosis, inflammation and immune responses. Long noncoding RNAs, particularly Metastasis-Associated Lung Adenocarcinoma Transcript 1 (MALAT1), are crucial regulators of gene expression. MALAT1 influences inflammatory responses, immune cell function and signaling pathways, impacting various physiological and pathological processes, including dermatologic disorders. Dysregulation of MALAT1 is observed in skin conditions like psoriasis, atopic dermatitis and systemic lupus erythematosus. However, its precise role remains unclear. This review consolidates knowledge on MALAT1\'s impact on skin biology and pathology, emphasizing its potential diagnostic and therapeutic implications in dermatologic conditions.
    [Box: see text].
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  • 文章类型: Review
    心血管疾病是全世界死亡率和发病率的主要原因。动脉粥样硬化斑块是主要因素的基础,由各种细胞类型组成,包括结构细胞,如内皮细胞和平滑肌细胞,和免疫细胞,如巨噬细胞和T细胞。单细胞RNA测序(scRNA-seq)已被广泛应用于破译这些细胞异质性,以扩大我们对动脉粥样硬化(AS)机制的理解,并促进识别细胞类型特异性长链非编码RNA(LncRNA)。LncRNAs已被证明在转录和转录后水平上深度调节生物活性。已经研究了AS中一组有据可查的功能性lncRNAs。在我们的审查中,我们选择性地描述了几种参与AS关键过程的lncRNAs。我们强调了四个新的lncRNA(lncRNACARMN,LINC00607,PCAT19,LINC01235)在scRNA-seq数据集中检测到及其在AS中的功能。我们还回顾了开源和生物信息学工具,以及对lncRNAs进行深入研究的最新方法。在AS的各种生物活性中注释功能lncRNAs是至关重要的,lncRNAs可能是未来临床实践中治疗和诊断的有希望的靶标。
    Cardiovascular diseases are the leading causes of mortality and morbidity worldwide. Atherosclerotic plaque underlies the predominant factors and is composed of various cell types, including structure cells, such as endothelial and smooth muscle cells, and immune cells, such as macrophages and T cells. Single-cell RNA sequencing (scRNA-seq) has been extensively applied to decipher these cellular heterogeneities to expand our understanding on the mechanisms of atherosclerosis (AS) and to facilitate identifying cell-type-specific long noncoding RNAs (LncRNAs). LncRNAs have been demonstrated to deeply regulate biological activities at the transcriptional and post-transcriptional levels. A group of well-documented functional lncRNAs in AS have been studied. In our review, we selectively described several lncRNAs involved in the critical process of AS. We highlighted four novel lncRNAs (lncRNA CARMN, LINC00607, PCAT19, LINC01235) detected in scRNA-seq datasets and their functions in AS. We also reviewed open web source and bioinformatic tools, as well as the latest methods to perform an in-depth study of lncRNAs. It is fundamental to annotate functional lncRNAs in the various biological activities of AS, as lncRNAs may represent promising targets in the future for treatment and diagnosis in clinical practice.
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  • 文章类型: Journal Article
    放射治疗在乳腺癌治疗中起着至关重要的作用。然而,肿瘤细胞可能对放疗有抗性。非编码RNA被认为是调节放射治疗的不同途径的调节剂。这篇系统综述对长的非编码RNA进行了分类,和微小RNA在乳腺癌患者的放射反应中沉淀。本文对14种microRNA和8种长非编码RNA进行了研究。miR-22,miR-200c,Let7和LINP1作为肿瘤抑制因子增加了BC放疗的效果。然而,一些非编码RNA,如HOTAIR,NEAT1和miR-21在放射性抗性乳腺癌中沉淀。放疗前后非编码RNA表达模式的显着变化使其成为预后和预测放疗反应的良好候选者。miR-21和miR-182可通过肿瘤干细胞促进放射抗性。最后,我们还研究了启动放射抗性的分子机制,以寻找开发放射致敏剂的候选非编码RNA.
    Radiotherapy has an essential role in breast cancer treatment. However, tumor cells may be resistant to radiotherapy. Noncoding RNAs are considered regulators of different pathways which modulate radiotherapy. This systematic review classifies long noncoding RNAs, and microRNAs precipitated in the radiation response of breast cancer patients. A total of 14 microRNAs and 8 long noncoding RNAs were studied in this review. MiR-22, miR-200 c, Let7, and LINP1 as tumor suppressors increase the effect of radiotherapy in BC. However, some noncoding RNAs such as HOTAIR, NEAT1, and miR-21 are precipitated in radio-resistance breast cancers. Significant changes in the pattern of noncoding RNAs expression before and after radiotherapy make them a good candidate for the prognosis and prediction of radiotherapy response. MiR-21 and miR-182 can promote radio-resistance via cancer stem cells. At last, the molecular mechanisms initiating radio-resistance were also examined to find the candidate noncoding RNAs for the development of radiation-sensitized agents.
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  • 文章类型: Journal Article
    Long noncoding RNAs (lncRNAs) are defined as RNA molecules longer than 200 nucleotides that can regulate gene expression at the transcriptional or post-transcriptional levels. Both human lncRNAs and lncRNAs encoded by viruses can modulate the expression of host genes which are critical for viral replication, latency, activation of signalling pathways, cytokine and chemokine production, RNAi processing, expression of interferons (IFNs) and interferon-stimulated genes (ISGs). Studies on lncRNAs as key regulators of host-virus interactions may give new insights into therapeutic strategies for the treatment of related diseases. This current review focuses on the role of lncRNAs, and their interactions with respiratory viruses including influenza A virus (IAV), respiratory syncytial virus (RSV) and severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2).
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  • 文章类型: Journal Article
    与植物相关的感染性长非编码(lnc)RNA可以是病毒和非病毒来源的。类病毒是与病毒无关的传染性植物lncRNAs,携带环状,单股,通过滚环机制以宿主酶活性复制的非编码RNA。病毒体以复杂的方式与宿主进程交互,正在成为研究lncRNAs功能的最有效的工具之一。缺陷(D)RNA,另一类lncRNA,在各种植物RNA病毒中发现,其中大多数是非编码的。这些衍生自辅助病毒并由辅助病毒复制。DRNA-病毒相互作用演变成互惠互利的组合,通过缓解症状的竞争优势增强病毒适应性。然而,卫星RNA是单链的,包括大的线性蛋白质编码ssRNA,小的线性ssRNA,或小的环状ssRNA(类病毒)。卫星RNA缺乏与辅助病毒的序列同源性,但与类病毒不同的是,类病毒需要辅助病毒来复制和包裹。它们可以通过RNA沉默和增强宿主防御来减轻症状,但有些可以作为RNA沉默抑制拮抗剂致死。此外,选定的病毒通过基因组RNA的不完全降解产生lncRNA。它们不会复制,但可能会影响病毒感染,基因调控,和细胞功能。最后,宿主植物lncRNAs也可以在植物-病毒相互作用过程中发挥作用,诱导植物防御和基因表达的调节,通常与micro和/或circRNAs结合。
    Infectious long-noncoding (lnc) RNAs related to plants can be of both viral and non-viral origin. Viroids are infectious plant lncRNAs that are not related to viruses and carry the circular, single-stranded, non-coding RNAs that replicate with host enzymatic activities via a rolling circle mechanism. Viroids interact with host processes in complex ways, emerging as one of the most productive tools for studying the functions of lncRNAs. Defective (D) RNAs, another category of lnc RNAs, are found in a variety of plant RNA viruses, most of which are noncoding. These are derived from and are replicated by the helper virus. D RNA-virus interactions evolve into mutually beneficial combinations, enhancing virus fitness via competitive advantages of moderated symptoms. Yet the satellite RNAs are single-stranded and include either large linear protein-coding ss RNAs, small linear ss RNAs, or small circular ss RNAs (virusoids). The satellite RNAs lack sequence homology to the helper virus, but unlike viroids need a helper virus to replicate and encapsidate. They can attenuate symptoms via RNA silencing and enhancement of host defense, but some can be lethal as RNA silencing suppressor antagonists. Moreover, selected viruses produce lncRNAs by incomplete degradation of genomic RNAs. They do not replicate but may impact viral infection, gene regulation, and cellular functions. Finally, the host plant lncRNAs can also contribute during plant-virus interactions, inducing plant defense and the regulation of gene expression, often in conjunction with micro and/or circRNAs.
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  • 文章类型: Journal Article
    Multiple myeloma (MM) is a hematologic malignancy characterized by unrestricted secretion of monoclonal immunoglobulin and uncontrolled plasma cell proliferation. Extra-medullary infiltration and drug resistance are two major obstacles in the treatment of MM. To solve these problems, it is necessary to elucidate the underlying pathological mechanisms and find new therapeutic targets. Noncoding RNAs (ncRNAs), which were once considered \"transcriptional noise,\" have been recognized as crucial regulators in the process of tumorigenesis including MM. Increasing evidence has shown that ncRNAs participate in MM pathogenesis via a series of complex cellular or extracellular processes. This review article summarizes examples of ncRNAs involved in myelosis and discusses their potential as biomarkers and therapeutic targets in the diagnosis and treatment of myelosis.
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  • 文章类型: Journal Article
    UNASSIGNED: Nasopharyngeal carcinoma (NPC) is a common head and neck malignancy. Despite recent advances in treatment, the prognosis, particularly for those at the advanced stages, remains poor. Moreover, the underlying genetic and molecular events have remained obscure so far. Recently, increasing evidence has demonstrated that long noncoding RNAs (lncRNAs) could act as either oncogenes or tumor suppressor genes in various cancers depending on their targets. And some lncRNAs have been shown to be aberrantly expressed in NPC. In this meta-analysis, we try to elucidate the possible role of lncRNAs and their expression on prognosis in NPC.
    UNASSIGNED: We searched the databases of PubMed, Embase, and Web of Science for relevant articles ranging from January 2000 to December 2017. Pooled hazard ratios (HRs) and 95% confidence intervals (CIs) were used to evaluate the prognostic value of lncRNAs in NPC. Odds ratios (ORs) were used to assess the association between lncRNAs and clinicopathological characteristics.
    UNASSIGNED: A total of 14 eligible publications including 14 on prognosis and eight on clinicopathological characteristics were identified. Our results demonstrated that the high expression of lncRNAs was related to poor overall survival (OS; HR =1.55; 95% CI =1.01, 2.40; P=0.05) and disease-free survival (DFS; HR =1.83; 95% CI =1.07, 3.13; P=0.03) of NPC. Moreover, the expression of lncRNAs was correlated with male gender (OR =1.42; 95% CI =1.05, 1.91; P=0.02), lymph node status (OR =2.20; 95% CI =1.29, 3.73; P=0.004), and tumor node metastasis (TNM) clinical stage (OR =2.55; 95% CI =1.12, 5.78; P=0.03).
    UNASSIGNED: This meta-analysis shows that the level of expression of lncRNAs may be a potential prognostic indicator in NPC.
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  • 文章类型: Journal Article
    Ovarian cancer (OC) is the most deadly gynecological cancer and it is urgently needed to find a new marker for the progress of OC. Many long noncoding RNAs (lncRNAs) have been reported to be aberrantly expressed in ovarian carcinoma, and may serve as prognostic markers. Therefore, we conducted this meta-analysis to gain a better understanding of the prognostic value of lncRNAs in patients with varian carcinoma. We systematically searched PubMed, EMBASE, and Web of Science. A total of 13 eligible studies, including 10 on clinicopathological features, 13 on prognosis were identified. Pooled hazard ratios (HRs) or odds ratios (OR) and 95% confidence intervals (95% CIs) were calculated using random- or fixed-effects models. Our results revealed that the increased expressions of 8 lncRNAs were associated with poor prognosis and the decreased expressions of 5 lncRNAs were related to poor prognosis in ovarian carcinoma. High HOTAIR expression was associated with shorter overall survival in ovarian cancer (pooled HR: 2.05, 95% CI: 1.51-2.77, P < 0.001). In conclusion, our meta-analysis suggested that LncRNAs could function as potential prognostic markers for ovarian cancer patients and high expression HOTAIR was associated with shorter overall survival in ovarian cancer.
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  • 文章类型: Journal Article
    With the development of technologies such as microarrays and RNA deep sequencing, long noncoding RNAs (lncRNAs) have become the focus of cancer investigations. LncRNAs, nonprotein-coding RNA molecules longer than 200 nucleotides, are dysregulated in many human diseases, especially in cancers. Recent studies have demonstrated that lncRNAs play a key regulatory role in gene expression and cancer biology through diverse mechanisms, including chromosome remodeling and transcriptional and post-transcriptional modifications. The expression levels of specific lncRNAs are attributed to prognosis, metastasis, and recurrence of cancer. LncRNAs are often involved in various biological processes, such as regulation of alternative splicing of mRNA, protein activity, and epigenetic modulation or silencing of the microRNAs, via discrete mechanisms. Deregulated levels of lncRNAs are shown in diverse tumors, including breast cancer. Based on latest research data, the tissue-specific expression signature of lncRNAs may represent the potential to discriminate normal and tumor tissue or even the different stages of breast cancer, which makes them clinically beneficial as possible biomarkers in the diagnosis and prognosis or therapeutic targets. In this brief review, we summarize some recent researches in the context of lncRNAs\' roles in breast cancer pathogenesis and their potential to serve as diagnostic, predictive, and prognostic biomarkers and novel targets for breast cancer treatment.
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