关键词: JCSG Joint Center for Structural Genomics LT MAD MD MGE MR N-acetylglucosamine N-acetylmuramic acid NAG NAM NIGMS NIH National Institute of General Medical Sciences National Institutes of Health NlpC/P60 endopeptidase PSI Protein Structure Initiative SSRL Stanford Synchrotron Radiation Lightsource TEV Tn916 family conjugative transposons asu asymmetric unit bacterial lysozyme bifunctional cell wall lysin lytic transglycosylase mobile genetic element molecular dynamics molecular replacement multi-wavelength anomalous dispersion muramidase tobacco etch virus

Mesh : Amino Acid Sequence Catalytic Domain Clostridioides difficile / genetics Crystallography, X-Ray DNA Transposable Elements Hydrolases / chemistry genetics Models, Molecular Molecular Sequence Data Protein Conformation Sequence Alignment Staphylococcus aureus / genetics

来  源:   DOI:10.1016/j.jmb.2013.09.011   PDF(Sci-hub)

Abstract:
Tn916-like conjugative transposons carrying antibiotic resistance genes are found in a diverse range of bacteria. Orf14 within the conjugation module encodes a bifunctional cell wall hydrolase CwlT that consists of an N-terminal bacterial lysozyme domain (N-acetylmuramidase, bLysG) and a C-terminal NlpC/P60 domain (γ-d-glutamyl-l-diamino acid endopeptidase) and is expected to play an important role in the spread of the transposons. We determined the crystal structures of CwlT from two pathogens, Staphylococcus aureus Mu50 (SaCwlT) and Clostridium difficile 630 (CdCwlT). These structures reveal that NlpC/P60 and LysG domains are compact and conserved modules, connected by a short flexible linker. The LysG domain represents a novel family of widely distributed bacterial lysozymes. The overall structure and the active site of bLysG bear significant similarity to other members of the glycoside hydrolase family 23 (GH23), such as the g-type lysozyme (LysG) and Escherichia coli lytic transglycosylase MltE. The active site of bLysG contains a unique structural and sequence signature (DxxQSSES+S) that is important for coordinating a catalytic water. Molecular modeling suggests that the bLysG domain may recognize glycan in a similar manner to MltE. The C-terminal NlpC/P60 domain contains a conserved active site (Cys-His-His-Tyr) that appears to be specific to murein tetrapeptide. Access to the active site is likely regulated by isomerism of a side chain atop the catalytic cysteine, allowing substrate entry or product release (open state), or catalysis (closed state).
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