spider venom

蜘蛛毒液
  • 文章类型: Journal Article
    毒液在有毒动物的防御和捕食中起着至关重要的作用。蜘蛛(Araneae)是最成功的捕食者之一,具有迷人的毒液成分。它们的毒液主要含有富含二硫键的肽和大蛋白质。这里,我们分析了蜘蛛毒蛋白家族,利用转录组和基因组数据,并强调了它们的异同。我们证明蜘蛛具有特定的毒素组合,可以更好地捕食和防御,通常包含与几种辅助毒素一起表达的核心毒素。其中,CAP超家族在网络构建的Araneoidea蜘蛛中分布广泛,表达很高。我们对进化关系的分析揭示了CAP超家族的四个亚家族(subA-subD),它们的结构和潜在功能不同。CAP蛋白由保守的CAP结构域和不同的C末端结构域组成。CAPsubC与蛇离子通道调节蛋白svCRISP共享相似的结构域,而CAPsubD具有与昆虫毒液过敏原5(Ag5)相似的序列。此外,我们表明基因复制和选择性表达导致CAPsubD的表达增加,使其成为CAP超家族的核心成员.本研究揭示了CAP亚家族的功能多样性及其进化史,这对于充分理解蜘蛛毒液蛋白的组成和网络构建蜘蛛的核心毒素成分具有重要意义。
    Venom plays a crucial role in the defense and predation of venomous animals. Spiders (Araneae) are among the most successful predators and have a fascinating venom composition. Their venom mainly contains disulfide-rich peptides and large proteins. Here, we analyzed spider venom protein families, utilizing transcriptomic and genomic data, and highlighted their similarities and differences. We show that spiders have specific combinations of toxins for better predation and defense, typically comprising a core toxin expressed alongside several auxiliary toxins. Among them, the CAP superfamily is widely distributed and highly expressed in web-building Araneoidea spiders. Our analysis of evolutionary relationships revealed four subfamilies (subA-subD) of the CAP superfamily that differ in structure and potential functions. CAP proteins are composed of a conserved CAP domain and diverse C-terminal domains. CAP subC shares similar domains with the snake ion channel regulator svCRISP proteins, while CAP subD possesses a sequence similar to that of insect venom allergen 5 (Ag5). Furthermore, we show that gene duplication and selective expression lead to increased expression of CAP subD, making it a core member of the CAP superfamily. This study sheds light on the functional diversity of CAP subfamilies and their evolutionary history, which has important implications for fully understanding the composition of spider venom proteins and the core toxin components of web-building spiders.
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  • 文章类型: Journal Article
    多胺(PAs)是普遍存在于所有生命形式中的聚阳离子生物胺,参与分子信号和相互作用。确定细胞命运(例如,细胞增殖,区分,和凋亡)。组织中PAs水平的复杂平衡将决定是否有益或有害影响会影响稳态。重要的是要注意内聚多胺,像精胺和亚精胺,在我们对神经系统疾病的理解中起着关键作用,因为它们与膜受体和离子通道相互作用,调节神经传递.在蜘蛛和黄蜂中,单胺(组胺,多巴胺,血清素,色胺)和多胺(精胺,亚精胺,酰基多胺)包括,肽和其他物质,毒液的低分子量部分。酰基多胺是仅来自蜘蛛和一种孤立黄蜂的毒液成分,主要抑制亲离子性谷氨酸受体(AMPA,NMDA,和KAiGluRs)和烟碱乙酰胆碱受体(nAChRs)。有史以来发现的第一个毒液酰基多胺(精氨酸,Joro和Nephila毒素,和博爱毒素)为许多类似物的设计和合成提供了模板。到目前为止,具有高效力的类似物在纳摩尔浓度下发挥其作用,对它们的离子型和配体受体具有高度的选择性。这些有效和选择性的酰基多胺类似物可以用于生物医学目的和害虫控制管理。用光不稳定基团和荧光基团对酰基多胺进行结构修饰,将这些毒液毒素转化为有用的分子探针,以区分细胞群中的iGluR和nAchR。在各种情况下,线性多胺,像精胺和亚精胺,构成毒液酰基多胺骨架,作为货物通过多胺摄取系统在病变细胞上递送活性分子用于靶向治疗。在这次审查中,我们研究了在神经稳态和细胞信号传导中起重要作用的生物胺的例子,有助于人类健康和疾病的结果,可能存在于蜘蛛和膜翅目昆虫的毒液中。在蜘蛛和黄蜂的毒液上加上酰基多胺,我们专注于起源,结构,衍生工具,以及生物医学和生物技术的应用,化学模块化毒液成分。
    Polyamines (PAs) are polycationic biogenic amines ubiquitously present in all life forms and are involved in molecular signaling and interaction, determining cell fate (e.g., cell proliferation, dif-ferentiation, and apoptosis). The intricate balance in the PAs\' levels in the tissues will determine whether beneficial or detrimental effects will affect homeostasis. It\'s crucial to note that endoge-nous polyamines, like spermine and spermidine, play a pivotal role in our understanding of neu-rological disorders as they interact with membrane receptors and ion channels, modulating neuro-transmission. In spiders and wasps, monoamines (histamine, dopamine, serotonin, tryptamine) and polyamines (spermine, spermidine, acyl polyamines) comprise, with peptides and other sub-stances, the low molecular weight fraction of the venom. Acylpolyamines are venom components exclusively from spiders and a species of solitary wasp, which cause inhibition chiefly of iono-tropic glutamate receptors (AMPA, NMDA, and KA iGluRs) and nicotinic acetylcholine receptors (nAChRs). The first venom acylpolyamines ever discovered (argiopines, Joro and Nephila toxins, and philanthotoxins) have provided templates for the design and synthesis of numerous analogs. Thus far, analogs with high potency exert their effect at nanomolar concentrations, with high se-lectivity toward their ionotropic and ligand receptors. These potent and selective acylpolyamine analogs can serve biomedical purposes and pest control management. The structural modification of acylpolyamine with photolabile and fluorescent groups converted these venom toxins into use-ful molecular probes to discriminate iGluRs and nAchRs in cell populations. In various cases, the linear polyamines, like spermine and spermidine, constituting venom acyl polyamine backbones, have served as cargoes to deliver active molecules via a polyamine uptake system on diseased cells for targeted therapy. In this review, we examined examples of biogenic amines that play an essential role in neural homeostasis and cell signaling, contributing to human health and disease outcomes, which can be present in the venom of arachnids and hymenopterans. With an empha-sis on the spider and wasp venom acylpolyamines, we focused on the origin, structure, derivatiza-tion, and biomedical and biotechnological application of these pharmacologically attractive, chemically modular venom components.
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  • 文章类型: Journal Article
    蜘蛛毒液由数百种蛋白质和肽组成。这些毒液毒素中的几种是质量范围为3-9kDa的富含半胱氨酸的肽。小肽(<3kDa)可以通过质谱分析充分表征,而蛋白质通常通过自下而上的方法鉴定,其中蛋白质首先用胰蛋白酶消化以产生用于MS/MS表征的较短肽。总的来说,对于蛋白质鉴定来说,测序两个或多个肽就足够了,但是对于毒液肽而言,需要完全阐明肽序列和分子中二硫键的数量。在这一章中,我们描述了一种通过多重酶消化完全测序和确定3-9kDa质量范围内蜘蛛毒肽二硫键数量的方法,天然和消化肽的质谱,从头分析,和序列重叠比对。
    Spider venoms are composed of hundreds of proteins and peptides. Several of these venom toxins are cysteine-rich peptides in the mass range of 3-9 kDa. Small peptides (<3 kDa) can be fully characterized by mass spectrometry analysis, while proteins are generally identified by the bottom-up approach in which proteins are first digested with trypsin to generate shorter peptides for MS/MS characterization. In general, it is sufficient for protein identification to sequence two or more peptides, but for venom peptidomics it is desirable to completely elucidate peptide sequences and the number of disulfide bonds in the molecules. In this chapter, we describe a methodology to completely sequence and determine the number of disulfide bonds of spider venom peptides in the mass range of 3-9 kDa by multiple enzyme digestion, mass spectrometry of native and digested peptides, de novo analysis, and sequence overlap alignment.
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  • 文章类型: Journal Article
    抗生素抗性病原体的出现对人类健康产生损害。U1-SCTRX-Ig1a是从从Loxoscelesgaucho的蜘蛛毒液中提取的磷脂酶D中分离的肽,具有对革兰氏阴性细菌的抗菌活性(在1.15和4.6μM之间)。这项研究的目的是使用计算机生物信息学工具提出与U1-SCTRX-lg1a抗菌活性相关的潜在受体。使用PharmMapper服务器搜索U1-SCRTX-lg1a的潜在目标。使用PatchDock软件进行U1-SCRTX-Ig1a和受体之间的分子对接。使用PDBSum服务器进行每种受体的配体位点的预测。使用Chimera1.6软件仅对最佳对接评分受体进行分子动力学模拟。此外,使用AutoDockVina软件比较U1-SCRTX-Ig1a和天然配体相互作用。最后,将预测的相互作用与文献中先前描述的配体位点进行比较。U1-SCRTX-lg1a的生物勘探导致了三百(300)个不同目标的鉴定(表S1),其中49个是源自革兰氏阴性微生物的胞内蛋白(表S2)。对接结果显示分数(10,702至6066),面积(1498.70至728.40)和ACE(417.90至-152.8)值。其中,NADNH3依赖性合成酶(PDBID:1wxi)显示码头得分为9742,面积为1223.6,ACE为38.38,此外,PharmMapper服务器上的归一化拟合得分为8812。配体和受体相互作用的分析表明,棕色蜘蛛毒液衍生的肽可以与SER48和THR160残基相互作用。此外,C末端(-7.0分)对受体的亲和力大于N末端(-7.7分)。分子动力学分析表明,蛋白质复合物的自由能值为-214,890.21kJ/mol,而对于刚性对接,这个值是-29.952.8sugerindo,经过分子动力学模拟,与以前的状态相比,该复合物表现出更有利的能量值。受体的计算机生物勘探表明,U1-SCRTX-lg1a可能会干扰大肠杆菌中NAD的产生,革兰氏阴性细菌,改变微生物的稳态并损害生长。
    在线版本包含补充材料,可在10.1007/s40203-024-00190-8获得。
    The emergence of antibiotic-resistant pathogens generates impairment to human health. U1-SCTRX-lg1a is a peptide isolated from a phospholipase D extracted from the spider venom of Loxosceles gaucho with antimicrobial activity against Gram-negative bacteria (between 1.15 and 4.6 μM). The aim of this study was to suggest potential receptors associated with the antimicrobial activity of U1-SCTRX-lg1a using in silico bioinformatics tools. The search for potential targets of U1-SCRTX-lg1a was performed using the PharmMapper server. Molecular docking between U1-SCRTX-lg1a and the receptor was performed using PatchDock software. The prediction of ligand sites for each receptor was conducted using the PDBSum server. Chimera 1.6 software was used to perform molecular dynamics simulations only for the best dock score receptor. In addition, U1-SCRTX-lg1a and native ligand interactions were compared using AutoDock Vina software. Finally, predicted interactions were compared with the ligand site previously described in the literature. The bioprospecting of U1-SCRTX-lg1a resulted in the identification of three hundred (300) diverse targets (Table S1), forty-nine (49) of which were intracellular proteins originating from Gram-negative microorganisms (Table S2). Docking results indicate Scores (10,702 to 6066), Areas (1498.70 to 728.40) and ACEs (417.90 to - 152.8) values. Among these, NAD + NH3-dependent synthetase (PDB ID: 1wxi) showed a dock score of 9742, area of 1223.6 and ACE of 38.38 in addition to presenting a Normalized Fit score of 8812 on PharmMapper server. Analysis of the interaction of ligands and receptors suggests that the peptide derived from brown spider venom can interact with residues SER48 and THR160. Furthermore, the C terminus (- 7.0 score) has greater affinity for the receptor than the N terminus (- 7.7 score). The molecular dynamics assay shown that free energy value for the protein complex of - 214,890.21 kJ/mol, whereas with rigid docking, this value was - 29.952.8 sugerindo that after the molecular dynamics simulation, the complex exhibits a more favorable energy value compared to the previous state. The in silico bioprospecting of receptors suggests that U1-SCRTX-lg1a may interfere with NAD + production in Escherichia coli, a Gram-negative bacterium, altering the homeostasis of the microorganism and impairing growth.
    UNASSIGNED: The online version contains supplementary material available at 10.1007/s40203-024-00190-8.
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  • 文章类型: Case Reports
    背景:关于狼蚁咬伤引起的全身毒液的文献,特别是来自Theraphosidae家族,相对稀缺。本病例报告提供了第一个已知的由索科特拉岛蓝色BaboonTarantula(Monocentropusbalfouri)引起的系统性毒害实例的正式描述。
    方法:在这种情况下,一家异国宠物店的一名23岁员工患有口周感觉异常,全身肌肉痉挛,和横纹肌溶解症,因为包皮独一咬伤。口服苯二氮卓类药物成功缓解了他的症状。急诊医生会意识到这一点吗?:此案突显了因Monocentropusbalfouri咬伤而导致严重并发症的可能性,在全球异国宠物收藏家中越来越受欢迎的物种。
    BACKGROUND: Literature on systemic envenomation caused by tarantula bites, particularly from the Theraphosidae family, is relatively scarce. This case report provides a formal description of the first known instance of systemic envenomation caused by the Socotra Island Blue Baboon Tarantula (Monocentropus balfouri).
    METHODS: In this case, a 23-year-old employee of an exotic pet shop suffered from perioral paresthesia, generalized muscle cramps, and rhabdomyolysis because of a Monocentropus balfouri bite. His symptoms were successfully relieved with oral benzodiazepines. EMERGENCY PHYSICIAN BE AWARE OF THIS?: This case highlights the potential for serious complications resulting from the bite of Monocentropus balfouri, a species gaining popularity among global exotic pet collectors.
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  • 文章类型: Journal Article
    蜘蛛毒液已经进化了数千年,优化喂养和防御机制。毒液成分显示出药理和生物技术潜力,对他们学习的兴趣越来越高。然而,分离蜘蛛毒素进行实验评估提出了重大挑战。为了解决这个问题,结合计算工具的转录组学分析已成为表征蜘蛛毒液的一种吸引人的方法。然而,许多序列在自动注释后仍未识别。在这项研究中,我们从Phoneutrianigriventer转录组中手动筛选了一个以前未注释的序列子集,并鉴定了新的推定毒液成分。我们的人工分析显示,29%的分析序列是潜在的毒液成分,29%的假设/未表征的蛋白质,和17%的细胞功能蛋白。只有25%的最初未注释的数据集没有任何标识。大多数重新分类的成分是富含半胱氨酸的肽,包括23种新型推定毒素。我们还发现了富含甘氨酸的肽(GRP),证实了以前对Phoneutriapertyi毒腺中GRP的描述。此外,为了强调蜘蛛毒腺转录本缺乏注释的复发,我们提供了一些已发表的蜘蛛毒转录组学研究中未识别序列百分比的调查。总之,我们的研究强调了人工管理在发现新毒液成分方面的重要性,并强调需要改进注释策略,以充分利用蜘蛛毒液的医学和生物技术潜力.
    Spider venoms have evolved over thousands of years, optimizing feeding and defense mechanisms. Venom components show pharmacological and biotechnological potential, rising interest in their study. However, the isolation of spider toxins for experimental evaluation poses significant challenges. To address this, transcriptomic analysis combined with computational tools has emerged as an appealing approach to characterizing spider venoms. However, many sequences remain unidentified after automatic annotation. In this study, we manually curated a subset of previously unannotated sequences from the Phoneutria nigriventer transcriptome and identified new putative venom components. Our manual analysis revealed 29 % of the analyzed sequences were potential venom components, 29 % hypothetical/uncharacterized proteins, and 17 % cellular function proteins. Only 25 % of the originally unannotated dataset remained without any identification. Most reclassified components were cysteine-rich peptides, including 23 novel putative toxins. We also found glycine-rich peptides (GRP), corroborating the previous description of GRPs in Phoneutria pertyi venom glands. Furthermore, to emphasize the recurrence of the lack of annotation in spider venom glands transcripts, we provide a survey of the percentage of unidentified sequences in several published spider venom transcriptomics studies. In conclusion, our study highlights the importance of manual curation in uncovering novel venom components and underscores the need for improved annotation strategies to fully exploit the medical and biotechnological potential of spider venoms.
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  • 文章类型: Journal Article
    动物毒液是潜在生物杀虫剂的有希望的来源。为了找到具有明显口腔昆虫毒性的命中物,我们用黄曲霉和黄粉虫幼虫筛选了82个毒液,和成年果蝇。我们还在成年D.melanogaster中注射了最有效的毒液,以比较它们在不同给药途径中的效率。我们发现了至少18种具有高口服毒性的毒液,可以进一步利用这些毒液来分离新的杀虫剂。
    Animal venoms are a promising source of potential bioinsecticides. To find hits with pronounced oral insect toxicity, we screened 82 venoms using Achroia grisella (Lepidoptera) and Tenebrio molitor (Coleoptera) larvae, and adult Drosophila melanogaster (Diptera). We also injected the most potent venoms in adult D. melanogaster to compare their efficiency in different routes of administration. 18 venoms from spiders and snakes show high oral toxicity and can be further exploited to isolate new insecticides.
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  • 文章类型: Journal Article
    GDPD样SMaseD/PLD结构域家族,其中包括隐居蜘蛛和放线菌中的磷脂酶D(PLD)毒素,古代在细菌中从甘油磷酸二酯磷酸二酯酶(GDPD)进化而来。PLD酶保留了GDPD的核心(β/α)8倍,同时获得签名C端扩展基序并丢失小的插入域。使用序列比对和系统发育分析,我们推断C末端基序来自一个古老的细菌PLAT域的一部分。形式上,含有PLAT结构域重复的蛋白质的一部分与GDPD桶的C末端融合,导致PLAT域的一部分的附加,其次是第二个完整的PLAT域。完整的结构域仅保留在一些基础同源物中,但PLAT部分被保留并重新用作扩展主题。PLAT片段对应于β-三明治的β7-β8链,虽然蜘蛛PLD毒素中的扩展基序已被重塑为α-螺旋,β链,和有序循环。GDPD-PLAT融合导致建立GDPD样SMaseD/PLD家族的两次收购:1)PLAT结构域可能通过介导膜缔合来支持早期脂肪酶活性,和2)假定稳定催化结构域的扩展基序,可能补偿,或允许,丢失插入域。更广泛的意义,杂乱的域改组事件可能会留下可以挽救的域碎片,改造和重新利用。本文受版权保护。保留所有权利。
    The glycerophosphodiester phosphodiesterase (GDPD)-like SMaseD/PLD domain family, which includes phospholipase D (PLD) toxins in recluse spiders and actinobacteria, evolved anciently in bacteria from the GDPD. The PLD enzymes retained the core (β/α)8 barrel fold of GDPD, while gaining a signature C-terminal expansion motif and losing a small insertion domain. Using sequence alignments and phylogenetic analysis, we infer that the C-terminal motif derives from a segment of an ancient bacterial PLAT domain. Formally, part of a protein containing a PLAT domain repeat underwent fusion to the C terminus of a GDPD barrel, leading to attachment of a segment of a PLAT domain, followed by a second complete PLAT domain. The complete domain was retained only in some basal homologs, but the PLAT segment was conserved and repurposed as the expansion motif. The PLAT segment corresponds to strands β7-β8 of a β-sandwich, while the expansion motif as represented in spider PLD toxins has been remodeled as an α-helix, a β-strand, and an ordered loop. The GDPD-PLAT fusion led to two acquisitions in founding the GDPD-like SMaseD/PLD family: (1) a PLAT domain that presumably supported early lipase activity by mediating membrane association, and (2) an expansion motif that putatively stabilized the catalytic domain, possibly compensating for, or permitting, loss of the insertion domain. Of wider significance, messy domain shuffling events can leave behind scraps of domains that can be salvaged, remodeled, and repurposed.
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  • 文章类型: Journal Article
    来自RTA(胫骨后外侧突)进化枝的蜘蛛毒液含有多种短线性肽(SLP),可提供丰富的治疗候选物来源。这些肽中的许多具有杀虫性,抗菌和/或细胞溶解活性,但它们的生物学功能尚不清楚。这里,我们探索了先前在中国狼蜘蛛(Lycosashansia)的毒液中发现的SLPA家族的所有已知成员的生物活性。我们广泛的方法包括对细胞毒性的物理化学性质和生物活性分析进行计算机分析,抗病毒,杀虫和抗菌活性。我们发现A家族的大多数成员可以形成α-螺旋,并且类似于青蛙毒药中发现的抗菌肽。我们测试的肽没有细胞毒性,抗病毒或杀虫活性,但能够减少细菌的生长,包括表皮葡萄球菌和单核细胞增生李斯特菌的临床相关菌株。缺乏杀虫活性可能表明这些肽在猎物捕获中没有作用,但是它们的抗菌活性可能有助于保护毒腺免受感染。
    The venoms of spiders from the RTA (retro-lateral tibia apophysis) clade contain diverse short linear peptides (SLPs) that offer a rich source of therapeutic candidates. Many of these peptides have insecticidal, antimicrobial and/or cytolytic activities, but their biological functions are unclear. Here, we explore the bioactivity of all known members of the A-family of SLPs previously identified in the venom of the Chinese wolf spider (Lycosa shansia). Our broad approach included an in silico analysis of physicochemical properties and bioactivity profiling for cytotoxic, antiviral, insecticidal and antibacterial activities. We found that most members of the A-family can form α-helices and resemble the antibacterial peptides found in frog poison. The peptides we tested showed no cytotoxic, antiviral or insecticidal activities but were able to reduce the growth of bacteria, including clinically relevant strains of Staphylococcus epidermidis and Listeria monocytogenes. The absence of insecticidal activity may suggest that these peptides have no role in prey capture, but their antibacterial activity may help to defend the venom gland against infection.
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  • 离子通道在兴奋性和抑制性突触子集的产生和传播动作电位以及神经递质释放中起关键作用。这些通道的功能障碍与各种健康状况有关,如神经退行性疾病和慢性疼痛。神经变性是一系列神经病变的根本原因之一,如阿尔茨海默病(AD),帕金森病(PD),脑缺血,脑损伤,和视网膜缺血。疼痛是一种症状,可以作为疾病状况的严重程度和活动性的指标,预后指标,和治疗效果的标准。神经系统疾病和疼痛是不可否认的影响患者生存的条件,健康,和生活质量,可能的财务后果。毒液是离子通道调节剂的最著名的天然来源。毒液肽由于其通过数百万年的进化选择压力获得的高选择性和效力而越来越被认为是潜在的治疗工具。蜘蛛已经在其毒液中进化出复杂多样的肽库,具有超过3亿年的巨大药理活性。这些包括有效和选择性调节一系列靶标的肽,比如酶,受体,和离子通道。因此,蜘蛛毒液的成分具有作为缓解或减少神经变性和疼痛的候选药物的相当大的能力。这篇综述旨在总结蜘蛛毒素作用于离子通道的已知情况,提供神经保护和镇痛作用。
    Ion channels play critical roles in generating and propagating action potentials and in neurotransmitter release at a subset of excitatory and inhibitory synapses. Dysfunction of these channels has been linked to various health conditions, such as neurodegenerative diseases and chronic pain. Neurodegeneration is one of the underlying causes of a range of neurological pathologies, such as Alzheimer\'s disease (AD), Parkinson\'s disease (PD), cerebral ischemia, brain injury, and retinal ischemia. Pain is a symptom that can serve as an index of the severity and activity of a disease condition, a prognostic indicator, and a criterion of treatment efficacy. Neurological disorders and pain are conditions that undeniably impact a patient\'s survival, health, and quality of life, with possible financial consequences. Venoms are the best-known natural source of ion channel modulators. Venom peptides are increasingly recognized as potential therapeutic tools due to their high selectivity and potency gained through millions of years of evolutionary selection pressure. Spiders have been evolving complex and diverse repertoires of peptides in their venoms with vast pharmacological activities for more than 300 million years. These include peptides that potently and selectively modulate a range of targets, such as enzymes, receptors, and ion channels. Thus, components of spider venoms hold considerable capacity as drug candidates for alleviating or reducing neurodegeneration and pain. This review aims to summarize what is known about spider toxins acting upon ion channels, providing neuroprotective and analgesic effects.
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