protein sensing

蛋白质传感
  • 文章类型: Journal Article
    这里,我们展示了使用含有无机-有机杂化镧系元素的高发光纳米管状传感器阵列,超高灵敏度地检测细胞色素c(Cytc)的无标记双光学响应策略。这些传感器阵列是通过依次掺入光敏剂2,3-二羟基萘(DHN)或1,10-菲咯啉(Phen)形成的,和三价镧系元素铒离子(Tb3+)进入胆石酸钠(NaLC)纳米管模板。我们的传感平台依赖于溶液中Cytc的检测和量化,通过在Cytc的存在下提供来自纳米管混合阵列的双光致发光猝灭响应。DHN/Phen-Tb3+-NaLC内的敏化Tb3+发射的大猝灭是由光敏剂与Cytc的强结合引起的,细胞内的敏化Tb3+纳米管状传感器阵列传感器阵列与Cytc的散射信号的强结合为含有DHN的纳米管状传感器阵列(DHN-NaLC和DHN-Tb3-NaLC)提供了额外的猝灭响应,其特征在于独特的光谱谷分裂以及DHN荧光发射上的量化猝灭倾角。由蛋白质结合的DHN光敏剂和Cytc的血红素基团之间的有效FRET产生的这种光谱猝灭下降是在0-30μM浓度范围内特异性检测和定量Cytc的重要手段,具有约20nM的低检测极限。
    Here, we demonstrate a label-free dual optical response strategy for the detection of cytochrome c (Cyt c) with ultrahigh sensitivity using highly luminescent lanthanides containing inorganic-organic hybrid nanotubular sensor arrays. These sensor arrays are formed by the sequential incorporation of the photosensitizers 2,3-dihydroxynaphthalene (DHN) or 1,10-phenanthroline (Phen), and trivalent lanthanide terbium ions (Tb3+) into sodium lithocholate (NaLC) nanotube templates. Our sensing platform relies on the detection and quantification of Cyt c in solution by providing dual photoluminescence quenching responses from the nanotubular hybrid arrays in the presence of Cyt c. The large quenching of the sensitized Tb3+ emission within the DHN/Phen-Tb3+-NaLC nanotubular sensor arrays caused by the strong binding of the photosensitizers to Cyt c provides an important signal response for the selective detection of Cyt c. This long-lived lanthanide emission response-based sensing strategy can be highly advantageous for the detection of Cyt c in a cellular environment eliminating background fluorescence and scattering signals through time-gated measurements. The DHN containing nanotubular sensor arrays (DHN-NaLC and DHN-Tb3+-NaLC) provide an additional quenching response characterized by a unique spectral valley splitting with quantized quenching dip on the DHN fluorescence emission. This spectral quenching dip resulting from efficient FRET between the protein bound DHN photosensitizer and the heme group of Cyt c serves as an important means for specific detection and quantification of Cyt c in the concentration range of 0-30 μM with a low detection limit of around 20 nM.
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  • 文章类型: Journal Article
    对于早期医学诊断,以超低浓度识别疾病生物标志物至关重要。使用低维材料可以识别广泛的分析物,以构建高灵敏度,有针对性的,无标签,场效应晶体管(FET)生物传感器。二维(2D)材料是高性能生物传感的首选材料,因为它们在分析物吸附或生物标志物检测时电阻率会发生巨大变化。可调的电子特性,高表面活性,足够的稳定性,和依赖于层的半导体特性。我们简要概述了具有各种建筑风格的蛋白质传感的有趣应用,例如包括碳纳米管(CNT)的基于2D过渡金属二硫属化合物(TMD)的FET,石墨烯(Gr),还原氧化石墨烯(rGr),2D过渡金属碳化物(MXene),和Gr/MXene异质结构。因为它可以使个人表现得更好,这篇综述将是对医学科学领域的重要贡献。这些成就证明了即时诊断能够以超高性能水平检测生物标志物。总结了当前的机遇和挑战。
    It is crucial for early stage medical diagnostics to identify disease biomarkers at ultralow concentrations. A wide range of analytes can be identified using low-dimensional materials to build highly sensitive, targeted, label-free, field-effect transistor (FET) biosensors. Two-dimensional (2D) materials are preferable for high-performance biosensing because of their dramatic change in resistivity upon analyte adsorption or biomarker detection, tunable electronic properties, high surface activities, adequate stability, and layer-dependent semiconducting properties. We give a succinct overview of interesting applications for protein sensing with various architectural styles, such as 2D transition metal dichalcogenides (TMDs)-based FETs that include carbon nanotubes (CNTs), graphene (Gr), reduced graphene oxide (rGr), 2D transition-metal carbides (MXene), and Gr/MXene heterostructures. Because it might enable individuals to perform better, this review will be an important contribution to the field of medical science. These achievements demonstrate point-of-care diagnostics\' abilities to detect biomarkers at ultrahigh performance levels. A summary of the present opportunities and challenges appears in the conclusion.
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  • 文章类型: Journal Article
    具有一个NMe2烷基化(炔丙基化)基团和一个NMe2基团的三芳基硼烷(TB)染料的创新设计产生了既是NMe2π供体又是诱导NMe2烷基阳离子受体的系统。因此,新的TB染料对具有叠氮化物取代的赖氨酸侧链的“点击”反应高度敏感(产生TB-赖氨酸),导致100nm的发射红移。此外,连接到赖氨酸C末端的芴显示出带有TB发色团的FRET,对与目标的互动也很敏感。TB染料和TB赖氨酸对DNA和蛋白质都显示出高亲和力,通过相反的荧光反应报告DNA/RNA的结合(猝灭)与BSA(增加)。因此,新型TB染料是一种理想的荧光探针,可通过“点击”反应正交掺入生物靶标中,这是由于荧光报告了“点击”反应的进展并进一步感测了结合位点的组成。接触2-3天后,TB染料对人细胞系具有中等毒性,但在90分钟内有效地进入细胞,在短时间暴露时无毒。“点击”反应最重要的产品,TB-赖氨酸,对细胞无毒,线粒体和溶酶体之间分布均匀。进一步的研究将特别集中在通过共聚焦显微镜非常方便地监测TB染料与活细胞内生物相关靶标的“点击”缀合的进展。
    The innovative design of a triarylborane (TB)-dye with one NMe2-alkylated (propargylated) group and one NMe2 group yielded a system that is both an NMe2 π-donor and an inductive NMe2-alkyl cationic acceptor. Consequently, the new TB-dye was highly sensitive to a \"click\" reaction with an azide-substituted lysine side chain (yielding TB-lysine), resulting in a bathochromic shift of emission of 100 nm. In addition, fluorene attached to the lysine C-terminus showed FRET with the TB-chromophore, also sensitive to interactions with targets. Both the TB-dye and TB-lysine showed high affinities towards both DNA and proteins, reporting binding by an opposite fluorimetric response for DNA/RNA (quenching) vs. BSA (increase). Thus, the novel TB-dye is an ideal fluorimetric probe for orthogonal incorporation into bio-targets by \"click\" reactions due to fluorescence reporting of the progress of the \"click\" reaction and further sensing of the binding site composition. The TB-dye is moderately toxic to human cell lines after 2-3 days of exposure, but efficiently enters cells in 90 min, being non-toxic at short exposure. The most important product of the \"click\" reaction, TB-lysine, was non-toxic to cells and showed equal distribution between mitochondria and lysosomes. Further studies would focus particularly on the very convenient monitoring of the progress of \"click\" conjugation of the TB-dye with biorelevant targets inside living cells by confocal microscopy.
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  • 文章类型: Journal Article
    溶菌酶(LYZ)是一种小的阳离子蛋白质,广泛用于医疗和食品工业中,作为抗菌剂;然而,它会引发过敏反应。在这项研究中,使用固相方法合成了LYZ的高亲和力分子印迹纳米颗粒(nanoMIPs)。将生产的纳米MIP电接枝到丝网印刷电极(SPE),具有高商业潜力的一次性电极,实现电化学和热传感。电化学阻抗谱(EIS)促进了快速测量(5-10分钟),并且能够确定LYZ(pM)的痕量水平,并且可以区分LYZ和结构相似的蛋白质(牛血清白蛋白,肌钙蛋白-I)。串联,用传热法(HTM)进行了热分析,这是基于监测功能化SPE的固液界面处的传热阻力。HTM作为检测技术保证了LYZ的痕量水平(fM)检测,但与EIS测量相比需要更长的分析时间(30分钟vs5-10分钟)。考虑到nanoMIP的多功能性,可以适应几乎任何感兴趣的目标,这些低成本的护理点传感器具有改善食品安全的巨大潜力。
    Lysozyme (LYZ) is a small cationic protein which is widely used for medical treatment and in the food industry to act as an anti-bacterial agent; however, it can trigger allergic reactions. In this study, high-affinity molecularly imprinted nanoparticles (nanoMIPs) were synthesized for LYZ using a solid-phase approach. The produced nanoMIPs were electrografted to screen-printed electrodes (SPEs), disposable electrodes with high commercial potential, to enable electrochemical and thermal sensing. Electrochemical impedance spectroscopy (EIS) facilitated fast measurement (5-10 min) and is able to determine trace levels of LYZ (pM) and can discriminate between LYZ and structurally similar proteins (bovine serum albumin, troponin-I). In tandem, thermal analysis was conducted with the heat transfer method (HTM), which is based on monitoring the heat transfer resistance at the solid-liquid interface of the functionalized SPE. HTM as detection technique guaranteed trace-level (fM) detection of LYZ but needed longer analysis time compared to EIS measurement (30 min vs 5-10 min). Considering the versatility of the nanoMIPs which can be adapted to virtually any target of interest, these low-cost point-of-care sensors hold great potential to improve food safety.
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  • 文章类型: Journal Article
    超低噪声固态纳米孔对高精度单分子传感具有吸引力。传统的硅平台对系统引入了剧烈的电容噪声,这严重限制了录音带宽。最近,我们已经证明了在绝缘晶体蓝宝石晶片上创建薄三角形膜以消除寄生设备电容。与以前的三角形蚀刻窗口设计独特的不同,在这里,六边形窗口被探索,以产生三角形膜对准蓝宝石晶体在一个大的公差的对准角(10-35°)。有趣的是,蓝宝石刻面竞争用于抑制更复杂的多边形的形成,但创建稳定的三角形膜,其区域对刻面对齐不敏感。因此,一项新战略在2英寸上成功建立。蓝宝石晶片,用于生产平均膜边长为4.7μm的芯片,81%芯片的面积<30μm2,或估计的计算膜电容低至0.06pF。我们最终证明了在250kHz高带宽下<4μs的高速和高保真低噪声蛋白质检测。
    Ultra-low-noise solid-state nanopores are attractive for high-accuracy single-molecule sensing. A conventional silicon platform introduces acute capacitive noise to the system, which seriously limits the recording bandwidth. Recently, we have demonstrated the creation of thin triangular membranes on an insulating crystal sapphire wafer to eliminate the parasitic device capacitance. Uniquely different from the previous triangular etching window designs, here hexagonal windows were explored to produce triangular membranes by aligning to the sapphire crystal within a large tolerance of alignment angles (10-35°). Interestingly, sapphire facet competition serves to suppress the formation of more complex polygons but creates stable triangular membranes with their area insensitive to the facet alignment. Accordingly, a new strategy was successfully established on a 2 in. sapphire wafer to produce chips with an average membrane side length of 4.7 μm, an area of <30 μm2 for 81% chips, or estimated calculated membrane capacitance as low as 0.06 pF. We finally demonstrated <4 μs high-speed and high-fidelity low-noise protein detection under 250 kHz high bandwidth.
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  • 文章类型: Journal Article
    2-和2,7-取代的对-N-甲基吡啶芘阳离子显示出高亲和力嵌入ds-DNA中,而它们的非甲基化类似物仅以质子化形式(在pH5时)与ds-DNA/RNA相互作用,但不在生理条件下(pH7)。非甲基化类似物的荧光强烈依赖于吡啶的质子化;因此,它们充当荧光比率探针,用于在pH5下同时检测ds-DNA和BSA,依赖于420nm(BSA特异性)和520nm(DNA特异性)的强度之间的比率,通过将pH调节至7,可以关闭专门的ds-DNA传感。只有甲基化,永久带电的吡喃显示环状DNA的光诱导裂解,归因于芘介导的辐射诱导的单线态氧产生。因此,这些阳离子对人细胞系的中等毒性在辐射后强烈增加。详细的研究表明,通过所研究的化合物处理的细胞中ROS的总产生增加,伴随着细胞肿胀和细胞复杂性的增加。最具光活性的2-对-N-甲基吡啶芘在线粒体显示出显着的定位,它的光生物活性可能是由于线粒体DNA损伤。其他衍生物大多非选择性地分布在各种细胞质细胞器之间,因此不太活跃。
    The 2- and 2,7- substituted para-N-methylpyridinium pyrene cations show high-affinity intercalation into ds-DNAs, whereas their non-methylated analogues interacted with ds-DNA/RNA only in the protonated form (at pH 5), but not at physiological conditions (pH 7). The fluorescence from non-methylated analogues was strongly dependent on the protonation of the pyridines; consequently, they act as fluorescence ratiometric probes for simultaneous detection of both ds-DNA and BSA at pH 5, relying on the ratio between intensities at 420 nm (BSA specific) and 520 nm (DNA specific), whereby exclusively ds-DNA sensing could be switched-off by adjustment to pH 7. Only methylated, permanently charged pyrenes show photoinduced cleavage of circular DNA, attributed to pyrene-mediated irradiation-induced production of singlet oxygen. Consequently, the moderate toxicity of these cations against human cell lines is strongly increased upon irradiation. Detailed studies revealed increased total ROS production in cells treated by the compounds studied, accompanied by cell swelling and augmentation of cellular complexity. The most photo-active 2-para-N-methylpyridinium pyrene showed significant localization at mitochondria, its photo-bioactivity likely due to mitochondrial DNA damage. Other derivatives were mostly non-selectively distributed between various cytoplasmic organelles, thus being less photoactive.
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  • 文章类型: Journal Article
    作为生命中最重要的功能有机大分子之一,蛋白质不仅参与细胞代谢和基因调控,他们还认真保护身体的免疫系统,导致强大的生物屏障和稳态。纳米材料的进步正在推动各种应用的重大进展,包括痕量蛋白质的传感和检查。纳米纤维素取向的蛋白质传感处于这场革命的前沿。高生物相容性的固有特征,低细胞毒性,高特定区域,良好的耐久性和市场性使纳米纤维素在蛋白质传感方面具有极大的优势。这里,我们重点介绍了使用纳米纤维素作为痕量生物传感器的蛋白质传感的最新进展。此外,详细讨论了基于纳米纤维素的生物传感器的各种构建策略,提高临床/医疗诊断的敏捷性和准确性。最后,强调了在未来需要进一步探索的生物医学传感市场化新方法的认可识别中的几个挑战。
    As one of the most important functional organic macromolecules of life, proteins not only participate in the cell metabolism and gene regulation, they also earnestly protect the body\'s immunity system, leading to a powerful biological shield and homeostasis. Advances in nanomaterials are boosting the significant progress in various applications, including the sensing and examination of proteins in trace amount. Nanocellulose-oriented protein sensing is at the forefront of this revolution. The inherent feature of high biocompatibility, low cytotoxicity, high specific area, good durability and marketability endow nanocellulose with great superiority in protein sensing. Here, we highlight the recent progress of protein sensing using nanocellulose as the biosensor in trace amount. Besides, various kinds of construction strategies for nanocelluloses-based biosensors are discussed in detail, to enhance the agility and accuracy of clinical/medical diagnostics. Finally, several challenges in the approbatory identification of new approaches for the marketization of biomedical sensing that need further expedition in the future are highlighted.
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  • 文章类型: Journal Article
    复杂混合物的分离在整个分子生物学中无处不在,和基于凝胶电泳的技术是常见的实验室实践。这种方法并非没有缺点,然而,其中包括分析物和分离基质之间的非特异性相互作用,在纯化和非连续分析物通量的低产率。微流体技术,利用微尺度特有的物理现象,承诺改善传统实验室程序的许多方面。这些方法提供了一个定量的,基于溶液的替代传统的凝胶电泳,快速的测量时间使得能够分析瞬态或弱的生物分子相互作用,这将是具有挑战性的观察与传统方法。这里,我们提出了能够自由流动电泳(FFE)分级和分析生物分析物的微流控芯片的光刻制造和操作协议。我们通过基于DNA-蛋白质混合物的FFE分馏的蛋白质传感方法证明了我们方法的有效性。此外,这里描述的FFE技术可以很容易地适应各种制备和分析应用,提供有关指控的信息,zeta电位,和分析物的相互作用。
    The separation of complex mixtures is ubiquitous throughout molecular biology, and techniques such as gel-based electrophoresis are common laboratory practice. Such methods are not without their drawbacks, however, which include non-specific interactions between analyte and the separation matrix, poor yields in purification and non-continuous analyte throughput. Microfluidic techniques, which exploit physical phenomena unique to the microscale, promise to improve many aspects of traditional laboratory procedures. These methods offer a quantitative, solution-based alternative to traditional gel electrophoresis, with rapid measurement times enabling the analysis of transient or weak biomolecular interactions that would be challenging to observe with traditional methods. Here, we present a protocol for the lithographic fabrication and operation of microfluidic chips capable of free-flow electrophoretic (FFE) fractionation and analysis of biological analytes. We demonstrate the efficacy of our approach through a protein-sensing methodology based on FFE fractionation of DNA-protein mixtures. In addition, the FFE technique described here can be readily adapted to suit a variety of preparative and analytical applications, providing information on the charge, zeta-potential, and interactions of analytes.
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  • 文章类型: Journal Article
    天然形式的蛋白质的无标记检测和分析及其在单分子水平上与底物的动态相互作用对于基础研究和各种应用都很重要。在这里,我们展示了一种简单的电位法,通过利用单实体电化学技术原理检测溶液中蛋白质的天然电荷来实现这一目标。当带电蛋白质移动到连接到高阻抗电压表的浮动碳纳米电极附近时,由蛋白质的瞬时碰撞事件引起的不同的局部静电势变化,也被称为“纳米冲击”事件,可以被作为潜在探针的纳米电极捕获。这种电位滴定法对带电蛋白质高度敏感,在低盐浓度电解质中可以检测到小于10kDa的低分子量蛋白质。通过分析记录的时间分辨电势变化及其时间导数的形状和幅度,我们可以揭示非特异性蛋白质-表面相互作用事件中蛋白质的电荷和运动。还成功地探测了蛋白质在不同pH值下的电荷极性变化。与合成的球形纳米颗粒相比,对许多单分子纳米冲击事件的统计分析显示,所记录的瞬态电势信号有很大的变化,这可能归因于内在的蛋白质动力学和表面电荷异质性,如有限元方法和分子动力学模拟所建议的。
    Label-free detection and analysis of proteins in their natural form and their dynamic interactions with substrates at the single-molecule level are important for both fundamental studies and various applications. Herein, we demonstrate a simple potentiometric method to achieve this goal by detecting the native charge of protein in solution by utilizing the principle of single-entity electrochemistry techniques. When a charged protein moves near the vicinity of a floating carbon nanoelectrode connected to a high-impedance voltage meter, the distinct local electrostatic potential changes induced by the transient collision event of protein, also called the \"nanoimpact\" event, can be captured by the nanoelectrode as a potential probe. This potentiometric method is highly sensitive for charged proteins, and low-molecular-weight proteins less than 10 kDa can be detected in low-salt-concentration electrolytes. By analyzing the shape and magnitude of the recorded time-resolved potential change and its time derivative, we can reveal the charge and motion of the protein in the nonspecific protein-surface interaction event. The charge polarity variations of the proteins at different pH values were also successfully probed. Compared with synthetic spherical nanoparticles, the statistical analysis of many single-molecule nanoimpact events revealed a large variation in the recorded transient potential signals, which may be attributed to the intrinsic protein dynamics and surface charge heterogeneity, as suggested by the finite element method and molecular dynamic simulations.
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  • 文章类型: Journal Article
    In two decades, the solid state and polymer nanopores became attractive method for the protein sensing with high specificity and sensitivity. They also allow the characterization of conformational changes, unfolding, assembly and aggregation as well the following of enzymatic reaction. This review aims to provide an overview of the protein sensing regarding the technique of detection: the resistive pulse and ionic diodes. For each strategy, we report the most significant achievement regarding the detection of peptides and protein as well as the conformational change, protein-protein assembly and aggregation process. We discuss the limitations and the recent strategies to improve the nanopore resolution and accuracy. A focus is done about concomitant problematic such as protein adsorption and nanopore lifetime.
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