prioritization

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  • 文章类型: Journal Article
    地表水中化学污染的持续快速增加已成为全球普遍关注的紧迫问题。作为地表水中的新兴污染物(EC),药品和个人护理产品(PPCP),内分泌干扰化合物(EDCs)因其广泛存在和对人类健康的潜在威胁而受到广泛关注。因此,迫切需要全面了解中国地表水中ECs的发生和风险。本研究总结并评估了42种药品的环境发生浓度和生态风险,15个个人护理产品(PCP),在中国地表水中经常检测到20种EDC。ECs主要在中国人口稠密和高度工业化的地区检测到。大多数检测到的PPCP和EDC的浓度在ng/L至µg/L之间,而诺氟沙星,咖啡因,红霉素的污染水平相对较高,甚至超过2000ng/L基于风险商法的风险评估表明,中国地表水中34种PPCP和EDCs不构成重大风险,而4-壬基酚,4-叔辛基苯酚,17α-乙炔雌二醇,17β-雌二醇,三氯卡班做到了。这篇综述全面总结了过去十年中国地表水中典型的PPCP和EDC的发生和相关危害,并将有助于中国地表水中这些ECs的调节和控制。
    The continuous and rapid increase of chemical pollution in surface waters has become a pressing and widely recognized global concern. As emerging contaminants (ECs) in surface waters, pharmaceutical and personal care products (PPCPs), and endocrine-disrupting compounds (EDCs) have attracted considerable attention due to their wide occurrence and potential threat to human health. Therefore, a comprehensive understanding of the occurrence and risks of ECs in Chinese surface waters is urgently required. This study summarizes and assesses the environmental occurrence concentrations and ecological risks of 42 pharmaceuticals, 15 personal care products (PCPs), and 20 EDCs frequently detected in Chinese surface waters. The ECs were primarily detected in China\'s densely populated and highly industrialized regions. Most detected PPCPs and EDCs had concentrations between ng/L to µg/L, whereas norfloxacin, caffeine, and erythromycin had relatively high contamination levels, even exceeding 2000 ng/L. Risk evaluation based on the risk quotient method revealed that 34 PPCPs and EDCs in Chinese surface waters did not pose a significant risk, whereas 4-nonylphenol, 4-tert-octylphenol, 17α-ethinyl estradiol, 17β-estradiol, and triclocarban did. This review provides a comprehensive summary of the occurrence and associated hazards of typical PPCPs and EDCs in Chinese surface waters over the past decade, and will aid in the regulation and control of these ECs in Chinese surface waters.
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  • 文章类型: Journal Article
    监管和监测新出现的污染物的努力是不够的,因为新的化学品不断推向市场,和许多不受管制和潜在的有害。生活污水处理厂的设计目的不是去除微污染物,而是水生环境中新兴污染物的重要来源。在这项研究中,非靶标筛查,在没有先验信息的情况下分析化合物的无偏方法,用于识别可能在废水处理厂废水中排放的化合物,应进行监测。对9个污水处理厂采用不同的处理方法进行了研究,并使用非目标筛查数据处理方法。考虑了污染物被检测到的频率和污染物在处理过程中的持久性,然后优先考虑污染物。每种优先污染物的预测无影响浓度用于确定是否需要进一步分析和监测污染物。五种化合物的定量分析(金刚烷胺,阿替洛尔,苯并三唑,苯海拉明,和舒必利)使用参考标准进行。提出了17种污染物的可能分子式和结构,并使用预测的无效应浓度估算污染物带来的风险。这些结果为如何识别不受管制的微污染物提供了有价值的见解,并在未来的研究中优先进行监测。
    Efforts to regulate and monitor emerging contaminants are insufficient because new chemicals are continually brought to market, and many are unregulated and potentially harmful. Domestic wastewater treatment plants are not designed to remove micropollutants and are important sources of emerging contaminants in the aquatic environment. In this study, non-target screening, an unbiased method for analyzing compounds without prior information, was used to identify compounds that may be emitted in wastewater treatment plant effluent and should be monitored. Nine wastewater treatment plants using different treatment methods were studied, and a non-target screening data-processing method was used. The frequencies at which the contaminants were detected and contaminant persistence through the treatment processes were considered, and then the contaminants were prioritized. The predicted no-effect concentration of each prioritized contaminant was used to determine whether further analysis and monitoring of the contaminant was necessary. Quantitative analyses of five compounds (amantadine, atenolol, benzotriazole, diphenhydramine, and sulpiride) were performed using reference standards. Probable molecular formulae and structures were proposed for 17 contaminants, and the risks posed by the contaminants were estimated using predicted no-effect concentrations. The results provide valuable insights into how unregulated micropollutants can be identified and prioritized for monitoring in future studies.
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  • 文章类型: Journal Article
    农药是对水生环境构成风险的主要驱动因素之一,污水处理厂(WWTP)的废水是主要来源。本研究旨在确定通过污水处理厂废水释放到水生环境中的主要农药,从而使公共水体的污染管理更加有效。在这项研究中,监测,风险评估,并基于风险对永山河流域三个污水处理厂废水中的87种农药进行优先排序,韩国,进行了。总共检测到59种农药,浓度从0.852ng/L到82.044μg/L,并且在不同的WWTP位置表现出可变的模式。基于单个农药的风险商(RQ)的环境风险评估确定了13种涉及重大生态毒理学风险的物质,因为它们至少一次超过RQ值1。基于优化风险(RQf)的优先级排序,考虑测量的环境浓度(MEC)超过预测的环境浓度(PNEC)的频率,进行是为了确定可能构成风险的农药,因此应作为优先事项进行管理。四种农药的RQf值>1;metribuzin的RQf值最高,为4.951,其次是3-苯氧基苯甲酸,阿特拉津-2-羟基,还有阿特拉津.此外,五种杀虫剂(特丁肼,甲苯并噻草隆,Diuron,噻虫啉,和氟虫腈)和另外四种农药(丙嗪,吡虫啉,己唑醇,和六氮酮)的RQf值分别>0.1和>0.01。通过计算单个农药对这些混合物的RQf的贡献(RQf,混合)基于浓度添加模型,确定>95%的RQf总和,混合是由前七种杀虫剂驱动的。这些发现强调了优先考虑农药对有效管理污染源的重要性。
    Pesticides are among the main drivers posing risks to aquatic environments, with effluents from wastewater treatment plants (WWTPs) serving as a major source. This study aimed to identify the primary pesticides for which there was a risk of release into aquatic environments through WWTP effluents, thereby enabling more effective contamination management in public water bodies. In this study, monitoring, risk assessment, and risk-based prioritization of 87 pesticides in effluents from three WWTPs in the Yeongsan River Basin, Korea, were conducted. A total of 59 pesticides were detected at concentrations from 0.852 ng/L to 82.044 μg/L and exhibited variable patterns across different WWTP locations. An environmental risk assessment based on the risk quotient (RQ) of individual pesticides identified 13 substances implicated in significant ecotoxicological risks, as they exceeded RQ values of 1 at least once. An optimized risk (RQf)-based prioritization, considering the frequency of the measured environmental concentration (MEC) exceeding the predicted environmental concentration (PNEC), was conducted to identify pesticides that potentially posed risks and thus should be managed as a priority. Four pesticides had an RQf value >1; metribuzin exhibited the highest RQf value of 4.951, followed by 3-phenoxybenzoic acid, atrazin-2-hydroxy, and atrazine. Additionally, five pesticides (terbuthylazine, methabenzthiazuron, diuron, thiacloprid, and fipronil) and another four pesticides (propazine, imidacloprid, hexaconazole, and hexazione) had RQf values >0.1 and > 0.01, respectively. By calculating the contributions of individual pesticides to the RQf of these mixtures (RQf, mix) based on the concentration addition model, it was determined that >95 % of the sum of RQf, mix was driven by the top seven pesticides. These findings highlight the importance of prioritizing pesticides for effective management of contamination sources.
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    文章类型: Journal Article
    包括个性化疫苗在内的新抗原靶向疗法在癌症治疗中显示出希望。新抗原的准确识别/优先排序与设计临床试验高度相关,预测治疗反应,了解抵抗机制。随着大规模平行测序技术的出现,现在可以根据患者特异性变异信息预测新抗原.然而,在将新抗原优先用于个性化治疗时,必须考虑多种因素.复杂性,如替代转录本注释,各种绑定,表达和免疫原性预测算法,和可变的肽长度/寄存器都潜在地影响新抗原选择过程。虽然计算工具为新抗原表征生成了许多算法预测,这些管道的结果很难导航,需要对底层工具的广泛了解才能准确解释。由于复杂的性质和数量的突出的新抗原特征,提供所有相关信息以促进下游应用程序的候选选择是当前工具无法解决的难题。我们已经创建了pVACview,第一个交互式工具,旨在帮助个性化新抗原治疗的新抗原候选物的优先排序和选择。pVACview具有用户友好和直观的界面,用户可以上传,探索,选择并输出他们的新抗原候选物。该工具允许用户使用变体可视化候选人,转录物和肽信息。pVACview将允许研究人员在基础和翻译设置中以更高的效率和准确性分析和优先考虑新抗原候选物。该应用程序可作为pVACtools管道的一部分在pvactools.org和作为在线服务器在pvacview.org。
    UNASSIGNED: Neoantigen targeting therapies including personalized vaccines have shown promise in the treatment of cancers, particularly when used in combination with checkpoint blockade therapy. At least 100 clinical trials involving these therapies are underway globally. Accurate identification and prioritization of neoantigens is highly relevant to designing these trials, predicting treatment response, and understanding mechanisms of resistance. With the advent of massively parallel DNA and RNA sequencing technologies, it is now possible to computationally predict neoantigens based on patient-specific variant information. However, numerous factors must be considered when prioritizing neoantigens for use in personalized therapies. Complexities such as alternative transcript annotations, various binding, presentation and immunogenicity prediction algorithms, and variable peptide lengths/registers all potentially impact the neoantigen selection process. There has been a rapid development of computational tools that attempt to account for these complexities. While these tools generate numerous algorithmic predictions for neoantigen characterization, results from these pipelines are difficult to navigate and require extensive knowledge of the underlying tools for accurate interpretation. This often leads to over-simplification of pipeline outputs to make them tractable, for example limiting prediction to a single RNA isoform or only summarizing the top ranked of many possible peptide candidates. In addition to variant detection, gene expression and predicted peptide binding affinities, recent studies have also demonstrated the importance of mutation location, allele-specific anchor locations, and variation of T-cell response to long versus short peptides. Due to the intricate nature and number of salient neoantigen features, presenting all relevant information to facilitate candidate selection for downstream applications is a difficult challenge that current tools fail to address.
    UNASSIGNED: We have created pVACview, the first interactive tool designed to aid in the prioritization and selection of neoantigen candidates for personalized neoantigen therapies including cancer vaccines. pVACview has a user-friendly and intuitive interface where users can upload, explore, select and export their neoantigen candidates. The tool allows users to visualize candidates across three different levels, including variant, transcript and peptide information.
    UNASSIGNED: pVACview will allow researchers to analyze and prioritize neoantigen candidates with greater efficiency and accuracy in basic and translational settings The application is available as part of the pVACtools pipeline at pvactools.org and as an online server at pvacview.org.
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  • 文章类型: Journal Article
    全球树门户,由国际植物园保护组织主办,提供有关全球约58,000个树种的信息。GlobalTree门户中包括保护行动追踪器,一个动态和协作的数据库,用于识别和监测全球树种的保护行动。
    保护行动追踪器整理了物种级别的保护行动信息,包括物种恢复/行动计划,异地收藏,传播协议,现场管理,物种保护政策,和教育/宣传活动。
    到目前为止,保护行动追踪器包含4126个树种的保护行动信息,包括2161种濒危物种,其中659人被归类为弱势群体,783濒临灭绝,719是极度濒危的。它涵盖了每个国家至少一种树种的保护行动信息;然而,89%的弱势群体需要更多信息,87%的濒危和77%的濒危树种。
    监测物种保护行动可以通过分享知识来支持保护实践的优先次序和扩大规模,加强合作,能够识别保护差距,并提供信息供决策者使用。跟踪物种一级的保护行动是,因此,对指导未来的保护工作至关重要。增加保护行动追踪器中的数据量将提高该工具指导未来保护工作的能力,避免树种灭绝。
    UNASSIGNED: The GlobalTree Portal, hosted by Botanic Gardens Conservation International, provides access to information on the approximately 58,000 tree species worldwide. Included in the GlobalTree Portal is the Conservation Action Tracker, a dynamic and collaborative database to identify and monitor conservation actions for tree species globally.
    UNASSIGNED: The Conservation Action Tracker collates conservation action information at the species level, including species recovery/action plans, ex situ collections, propagation protocols, in situ management, species protection policy, and education/awareness campaigns.
    UNASSIGNED: To date, the Conservation Action Tracker contains conservation action information for 4126 tree species, including 2161 threatened species, of which 659 are classified as Vulnerable, 783 as Endangered, and 719 as Critically Endangered. It covers conservation action information for at least one tree species in every country; however, more information is needed for 89% of Vulnerable, 87% of Endangered, and 77% of Critically Endangered tree species.
    UNASSIGNED: Monitoring species conservation actions can support the prioritization and scaling up of conservation practices by sharing knowledge, increasing collaboration, enabling the identification of conservation gaps, and making the information available to be used by decision-makers. Tracking conservation actions at the species level is, therefore, essential to guide future conservation efforts. Increasing the amount of data in the Conservation Action Tracker will improve the tool\'s ability to guide future conservation efforts and avoid the extinction of tree species.
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  • 文章类型: Journal Article
    抗菌素耐药性(AMR)破坏了联合国可持续发展目标的良好健康和福祉。已知抗生素会加剧AMR,但是非抗生素抗生素,例如季铵化合物(QAC),现在正在成为AMR的另一个重要驱动力。然而,由于化学结构和抗菌活性的模糊性,评估QAC在复杂环境基质中的AMR风险仍然具有挑战性。通过机器学习预测和高分辨率质谱分析,编制了工业化学品清单中的抗菌QAC(n=856)清单,它导致了沉积物中50种结构多样的抗菌QAC的鉴定,包括传统的烃基化合物和带有额外官能团的新亚类,比如胆碱,酯,甜菜碱,芳基醚,还有吡啶.城市废水,水产养殖,和医院出院是影响河口沉积物QAC分布规律的主要因素。毒性单位计算和宏基因组分析显示,这些QAC可以通过交叉和共抗性影响抗生素抗性基因(特别是磺酰胺抗性基因)。影响AMR的潜力与其环境持久性有关。这些结果表明,控制源头,防止共同使用QAC和磺胺类药物,优先控制高持久性分子将导致全球管理和可持续使用QAC。
    Antimicrobial resistance (AMR) undermines the United Nations Sustainable Development Goals of good health and well-being. Antibiotics are known to exacerbate AMR, but nonantibiotic antimicrobials, such as quaternary ammonium compounds (QACs), are now emerging as another significant driver of AMR. However, assessing the AMR risks of QACs in complex environmental matrices remains challenging due to the ambiguity in their chemical structures and antibacterial activity. By machine learning prediction and high-resolution mass spectrometric analysis, a list of antibacterial QACs (n = 856) from industrial chemical inventories is compiled, and it leads to the identification of 50 structurally diverse antibacterial QACs in sediments, including traditional hydrocarbon-based compounds and new subclasses that bear additional functional groups, such as choline, ester, betaine, aryl ether, and pyridine. Urban wastewater, aquaculture, and hospital discharges are the main factors influencing QAC distribution patterns in estuarine sediments. Toxic unit calculations and metagenomic analysis revealed that these QACs can influence antibiotic resistance genes (particularly sulfonamide resistance genes) through cross- and coresistances. The potential to influence the AMR is related to their environmental persistence. These results suggest that controlling the source, preventing the co-use of QACs and sulfonamides, and prioritizing control of highly persistent molecules will lead to global stewardship and sustainable use of QACs.
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  • 文章类型: Journal Article
    这项研究调查了发生的情况,去除率,以及韩国四个市政污水处理厂(WWTP)中43种有机微污染物(OMP)的潜在风险。为期两年的密集监测结果证实了流入物中存在各种OMPs,包括药物如对乙酰氨基酚(疼痛缓解),咖啡因(兴奋剂),西咪替丁(H2受体阻滞剂),布洛芬(非甾体抗炎药-NSAIDs),二甲双胍(抗糖尿病药),和萘普生(NSAIDs),中位浓度>1μg/L。一些药物(卡马西平-抗惊厥药,双氯芬酸-NSAIDs,普萘洛尔-β-受体阻滞剂),缓蚀剂(1H-苯并三唑-BTR,4-甲基-1H-苯并三唑-4-TTR),在污水处理厂处理期间,全氟化合物(PFCs)的去除量可忽略不计。8月份流入液和流出物中的OMP浓度大多低于其他月份(p值<0.05),这可能是由于高温条件下高沉淀或强化生物降解导致的废水稀释。使用膜生物反应器的厌氧-缺氧-氧过程(A2O)显示出比其他过程更高的OMP去除率,如A2O沉降法或常规活性污泥法(p值<0.05)。农药(DEET和阿特拉津),缓蚀剂(4-TTR和BTR),和二甲双胍被选为毒性驱动优先排序的优先OMPs,而考虑到PFCs的持久性和生物蓄积性,PFCs被确定为优先OMPs。总的来说,我们的结果有助于建立一个重要的数据库,移除,以及韩国WWTP中OMP的潜在风险。
    This study investigated the occurrence, removal rate, and potential risks of 43 organic micropollutants (OMPs) in four municipal wastewater treatment plants (WWTPs) in Korea. Results from two-year intensive monitoring confirmed the presence of various OMPs in the influents, including pharmaceuticals such as acetaminophen (pain relief), caffeine (stimulants), cimetidine (H2-blockers), ibuprofen (non-steroidal anti-inflammatory drugs- NSAIDs), metformin (antidiabetics), and naproxen (NSAIDs) with median concentrations of >1 μg/L. Some pharmaceuticals (carbamazepine-anticonvulsants, diclofenac-NSAIDs, propranolol-β-blockers), corrosion inhibitors (1H-benzotriazole-BTR, 4-methyl-1H-benzotriazole-4-TTR), and perfluorinated compounds (PFCs) were negligibly removed during WWTP treatment. The OMP concentrations in the influents and effluents were mostly lower in August than those of other months (p-value <0.05) possibly due to wastewater dilution by high precipitation or enhanced biodegradation under high-temperature conditions. The anaerobic-anoxic-oxic process (A2O) with a membrane bioreactor exhibited higher OMP removal than other processes, such as A2O with sedimentation or the conventional activated sludge process (p-value <0.05). Pesticides (DEET and atrazine), corrosion inhibitors (4-TTR and BTR), and metformin were selected as priority OMPs in toxicity-driven prioritization, whereas PFCs were determined as priority OMPs given their persistence and bioaccumulation properties. Overall, our results contribute to an important database on the occurrence, removal, and potential risks of OMPs in Korean WWTPs.
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  • 文章类型: Journal Article
    在加拿大,五分之一的人患有慢性疼痛,一种经常与其他慢性疾病同时发生的疾病。和大多数慢性病一样,成功参与症状管理是关键.在多种疾病的背景下,自我管理涉及症状和状况的日常优先排序和决策,这可能是具有挑战性的。慢性病的自我管理可能需要更复杂的能力和任务来解决每种疾病的不同影响。
    我们的研究目标是探索患有慢性疼痛和其他慢性疾病的成年人自我管理症状优先排序的类型和过程。
    这项研究是作为一项较大研究的一部分进行的,该研究采用了解释性的顺序混合方法设计。这项研究更具体地集中在研究的定性部分。
    为定性部分招募的参与者在蒙特利尔大学中心医院在线或面对面地参加了半结构化的个人访谈。
    总共,25名参与者接受了采访,包括18名女性和7名男性。
    要参与研究的定性部分,参与者从较大的研究中选出,如果他们年龄在18岁或以上,并且疼痛时间超过3个月,并且至少有一种其他慢性疾病正在接受治疗或参与症状管理,则他们符合研究条件.半结构化访谈是亲自或虚拟进行的,并逐字记录。反思主题分析用于探索患者的叙述,并采用了开放和迭代的方法来编码访谈和生成主题。
    第一个主题,专注于症状优先排序,显示了不同的优先级过程,包括优先考虑显性疾病,优先考虑多种疾病,以避免不良后果,最后是缺少或自动进行优先级排序的过程。在第二个主题中,我们确定了疾病的几个特征,在这种情况下,慢性疼痛使其成为自我管理的优先事项:无法控制和致残的性质,无所不在,不可预测性,不愉快,和对他人的隐形。在最后一个主题中,我们强调,一些社会心理因素影响了自我管理和优先过程的参与程度,包括社会支持和医患关系。
    慢性疼痛是参与者在自我管理任务中最常优先考虑的医疗状况。由于其特点,对日常功能产生负面影响的是医疗条件。
    UNASSIGNED: In Canada, one out of five people lives with chronic pain, a condition frequently co-occurring with other chronic illnesses. As with most chronic illnesses, successful engagement in symptom management is key. In the context of multiple illnesses, self-management involves daily prioritization of symptoms and conditions and decision-making, which can be challenging. Self-management of chronic illnesses can require more complex competence and tasks to address the different implications of each condition.
    UNASSIGNED: Our research objective was to explore types and processes of self-management symptom prioritization among adults living with chronic pain and other chronic illnesses.
    UNASSIGNED: This research was carried out as part of a larger study that adopted an explanatory sequential mixed-methods design. This study focused more specifically on the qualitative part of the study.
    UNASSIGNED: Participants recruited for the qualitative component took part in a semi-structured individual interview online or in-person at the center hospitalier de l\'Université de Montréal.
    UNASSIGNED: In total, 25 participants were interviewed, including 18 women and 7 men.
    UNASSIGNED: To participate in the qualitative part of the study, participants were selected from the larger study and were eligible if they were 18 years old or older and experiencing pain for more than 3 months and had at least one other chronic illness for which they were receiving treatment or engaged in symptom management. Semi-structured interviews were conducted in-person or virtually and were transcribed verbatim. Reflexive thematic analysis was used to explore patients\' narratives, and an open and iterative approach was adopted to code interviews and generate themes.
    UNASSIGNED: The first theme, focus on symptom prioritization, showed different prioritization processes, including prioritizing a dominant illness, prioritizing multiple illnesses to avoid undesirable consequences, and finally absence of or automatic processes of prioritization. In the second theme, we identified several characteristics of an illness, in this case chronic pain that made it a self-management priority: uncontrollable and disabling nature, omnipresence, unpredictability, unpleasantness, and invisibility to others. In the last theme, we highlighted that some psychosocial factors influenced levels of engagement in self-management and prioritization processes, including social support and the patient-physician relationship.
    UNASSIGNED: Chronic pain was the medical condition most often prioritized by participants in their self-management tasks. Because of its characteristics, it was the medical condition that had the most negative impact on day-to-day functioning.
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  • 文章类型: Journal Article
    医生经常面临严格的资源限制,这意味着他们必须在他们照顾的病人和接受的护理量之间做出权衡。研究表明,当资源有限时,需要许多资源的患者会不成比例地遭受护理损失。这项研究揭示了医生对医疗保健优先次序的态度是否可以预测健康状况较差的患者获得护理。我们将丹麦全科医生的独特调查数据“首选优先原则”与一般实践中患者接触的登记数据相结合。我们考虑不同类型的联系人,因为所需的努力可能会影响优先次序的需要。我们的结果显示了全科医生优先原则的变化,大多数人更喜欢可能导致服务分配不均的原则。我们进一步发现,全科医生对优先排序的态度可以预测一些健康状况不佳的患者可以接受全科治疗。全科医生表示,当资源紧缩时,他们更喜欢在最贫穷的健康状况下优先考虑患者的原则,这为健康状况不佳的患者提供了更多的联系。额外的联系人通常是高度努力的联系人,例如年度状态会议和家访,但也低努力的联系人,如电子邮件。我们的发现表明,健康状况较差的患者在一般实践中获得护理的不平等。
    Physicians often face tight resource constraints, meaning they have to make trade-offs between which patients they care for and the amount of care received. Studies show that patients requiring many resources disproportionately suffer a loss of care when resources are constrained. This study uncovers whether physicians\' attitudes toward prioritization of healthcare predicts poor-health patients\' access to care. We combine unique survey data on Danish GPs\' preferred prioritization principle with register data on their patients\' contacts in general practice. We consider different types of contacts as the required effort could impact the need for prioritization. Our results show variation in GPs\' prioritization principles, where a majority prefers a principle that may lead to an unequal distribution of services. We further find that GPs\' attitudes toward prioritization predict some poor-health patients\' access to general practice. GPs who state they prefer the principle of prioritizing patients in the poorest health state when resources tightened provide more contacts to poor-health patients. The additional contacts are typically high-effort contacts such as annual status meetings and home visits, but also low-effort contacts such as emails. Our findings indicate inequity in poor-health patients\' access to care across general practices.
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  • 文章类型: Journal Article
    背景:已提出共同癌症机制的表征以改善治疗策略和预后。这里,我们旨在鉴定多种实体癌的肿瘤微环境中共有的细胞-细胞相互作用(CCI),并评估其与癌症死亡率的相关性.
    方法:通过NicheNet分析来自乳腺癌的单细胞RNA测序数据,结肠,肝脏,肺,和卵巢癌。这些CCI用于构建代表跨癌症的常见CCI的共享多细胞肿瘤模型(共享MCTM)。从shared-MCTM中鉴定出基因签名,并在两个大型独立队列中的mRNA和蛋白质水平上进行了测试:癌症基因组图谱(TCGA,22种癌症的9185个肿瘤样本和727个对照)和英国生物库(UKBB,10,384名癌症患者和5063名对照患者在17种癌症中具有蛋白质组学数据)。Cox比例风险模型用于评估签名与10年全因死亡率的关联。包括性别特异性分析。
    结果:共有MCTM来源于5个个体癌症。从这种共享的MCTM和最突出的调节细胞类型中提取了共享的基因标签,基质癌相关成纤维细胞(mCAF)。在两个独立的群组中,与在mRNA和蛋白质水平上的对照相比,该标记在多种癌症中表现出显著的表达变化。重要的是,这与两个队列中癌症患者的死亡率显著相关.TCGA中的脑癌(HR[95CI]=6.90[4.64-10.25])和UKBB中的卵巢癌(5.53[2.08-8.80])的风险比最高。性别特异性分析揭示了不同的风险,与女性(1.84[1.44-2.37])相比,男性(2.41[1.97-2.96])与蛋白质签名评分相关的死亡风险更高。
    结论:我们从代表不同癌症共同CCI的综合共享MCTM中鉴定了一个基因签名,并揭示了mCAF在肿瘤微环境中的调节作用。基因标签的致病性相关性得到了两个独立队列中mRNA和蛋白质水平的差异表达以及与死亡率的关联的支持。
    BACKGROUND: Characterization of shared cancer mechanisms have been proposed to improve therapy strategies and prognosis. Here, we aimed to identify shared cell-cell interactions (CCIs) within the tumor microenvironment across multiple solid cancers and assess their association with cancer mortality.
    METHODS: CCIs of each cancer were identified by NicheNet analysis of single-cell RNA sequencing data from breast, colon, liver, lung, and ovarian cancers. These CCIs were used to construct a shared multi-cellular tumor model (shared-MCTM) representing common CCIs across cancers. A gene signature was identified from the shared-MCTM and tested on the mRNA and protein level in two large independent cohorts: The Cancer Genome Atlas (TCGA, 9185 tumor samples and 727 controls across 22 cancers) and UK biobank (UKBB, 10,384 cancer patients and 5063 controls with proteomics data across 17 cancers). Cox proportional hazards models were used to evaluate the association of the signature with 10-year all-cause mortality, including sex-specific analysis.
    RESULTS: A shared-MCTM was derived from five individual cancers. A shared gene signature was extracted from this shared-MCTM and the most prominent regulatory cell type, matrix cancer-associated fibroblast (mCAF). The signature exhibited significant expression changes in multiple cancers compared to controls at both mRNA and protein levels in two independent cohorts. Importantly, it was significantly associated with mortality in cancer patients in both cohorts. The highest hazard ratios were observed for brain cancer in TCGA (HR [95%CI] = 6.90[4.64-10.25]) and ovarian cancer in UKBB (5.53[2.08-8.80]). Sex-specific analysis revealed distinct risks, with a higher mortality risk associated with the protein signature score in males (2.41[1.97-2.96]) compared to females (1.84[1.44-2.37]).
    CONCLUSIONS: We identified a gene signature from a comprehensive shared-MCTM representing common CCIs across different cancers and revealed the regulatory role of mCAF in the tumor microenvironment. The pathogenic relevance of the gene signature was supported by differential expression and association with mortality on both mRNA and protein levels in two independent cohorts.
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