model system

模型系统
  • 文章类型: Journal Article
    控制美拉德反应可能会影响2-乙酰基-1-吡咯啉的生成,大米中的关键香气化合物。在这项研究中,全面研究了葡萄糖/脯氨酸模型系统中2-乙酰基-1-吡咯啉的积累动力学,并添加了额外的甲基乙二醛或乙二醛以提高大米蒸煮过程中2-乙酰基-1-吡咯啉的浓度。利用多响应动力学模型推导动力学参数,乙二醛的形成,作为反应中间体,对2-乙酰基-1-吡咯啉的总生成速率进行速率测定。此外,虽然2-乙酰基-1-吡咯啉的产生更容易发生在较低的活化能,在120°C和140°C下,2-乙酰基-1-吡咯啉的消耗速率高得多,导致在100°C的较低温度下最大的2-乙酰基-1-吡咯啉积累。此外,在米饭中加入0.05μmol/kg的甲基乙二醛可显着提高2-乙酰基-1-吡咯啉的生成。这项工作表明,可以通过在热加工之前稍微积累中间体来开发具有卓越风味品质的大米产品。
    Controlling the Maillard reaction may affect the generation of 2-acetyl-1-pyrroline, the key aroma compound in rice. In this study, the kinetics of 2-acetyl-1-pyrroline accumulation in the glucose/proline model system was comprehensively investigated and extra methylglyoxal or glyoxal was added to enhance 2-acetyl-1-pyrroline concentrations during rice cooking. Using the multi-response kinetic modeling to derive kinetic parameters, the formation of glyoxal, as the reactive intermediate, was rate-determining for the overall generation rate of 2-acetyl-1-pyrroline. Besides, although 2-acetyl-1-pyrroline generation was easier to occur with lower activation energy, much higher depletion rates of 2-acetyl-1-pyrrroline at 120 °C and 140 °C led to maximal 2-acetyl-1-pyrroline accumulation at the lower temperature of 100 °C. Furthermore, the inclusion of 0.05 μmol/kg additional methylglyoxal in cooked rice significantly enhanced 2-acetyl-1-pyrroline generation. The work suggested that the development of rice products with superior flavor quality may be achieved by the slight accumulation of intermediates prior to thermal processing.
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  • 文章类型: Journal Article
    药物靶标的识别和作用机制的生化研究是现代药物开发中的主要问题。本文是对经典的“一种药物”-“一种目标”范式的批判性评论。事实上,基于蛋白质质谱的目标去卷积和抗性菌株研究的新方法表明,多种基因产物和适应机制参与病原体对异源生物的反应,而不是一个单一的基因或基因产物。对药物的抗性可能与其他蛋白质的差异表达有关,而不是在蛋白质结合研究中与药物相互作用的蛋白质,并导致复杂的细胞生理适应。因此,作用机制的解开需要蛋白质组学以外的方法。本文主要对原生动物病原体进行综述。结论可以,然而,扩展到针对其他病原体或癌症的化学疗法。
    Identification of drug targets and biochemical investigations on mechanisms of action are major issues in modern drug development. The present article is a critical review of the classical \"one drug\"-\"one target\" paradigm. In fact, novel methods for target deconvolution and for investigation of resistant strains based on protein mass spectrometry have shown that multiple gene products and adaptation mechanisms are involved in the responses of pathogens to xenobiotics rather than one single gene or gene product. Resistance to drugs may be linked to differential expression of other proteins than those interacting with the drug in protein binding studies and result in complex cell physiological adaptation. Consequently, the unraveling of mechanisms of action needs approaches beyond proteomics. This review is focused on protozoan pathogens. The conclusions can, however, be extended to chemotherapies against other pathogens or cancer.
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  • 文章类型: Journal Article
    溶酶体是消化细胞内物质的膜封闭细胞器。它们含有50多种不同的酶,可以降解包括核酸在内的各种大分子,蛋白质,多糖,和脂质。除了在溶酶体内发挥作用,溶酶体酶也被分泌。溶酶体酶的水平和活性的变化失调溶酶体,这可能导致生物物质的溶酶体内积累和人类溶酶体贮积病(LSD)的发展。盘基网柄菌具有用于研究溶酶体酶的运输和功能的悠久历史。最近,它已被用作研究几种LSD的模型系统。在这一章中,我们概述了评估盘状D.discoideum中几种溶酶体酶活性的方法(α-半乳糖苷酶,β-半乳糖苷酶,α-葡萄糖苷酶,β-葡萄糖苷酶,β-N-乙酰氨基葡萄糖苷酶,α-甘露糖苷酶,组织蛋白酶B,组织蛋白酶D,组织蛋白酶F,棕榈酰蛋白硫酯酶1和三肽基肽酶1)。
    Lysosomes are membrane-enclosed organelles that digest intracellular material. They contain more than 50 different enzymes that can degrade a variety of macromolecules including nucleic acids, proteins, polysaccharides, and lipids. In addition to functioning within lysosomes, lysosomal enzymes are also secreted. Alterations in the levels and activities of lysosomal enzymes dysregulates lysosomes, which can lead to the intralysosomal accumulation of biological material and the development of lysosomal storage diseases (LSDs) in humans. Dictyostelium discoideum has a long history of being used to study the trafficking and functions of lysosomal enzymes. More recently, it has been used as a model system to study several LSDs. In this chapter, we outline the methods for assessing the activity of several lysosomal enzymes in D. discoideum (α-galactosidase, β-galactosidase, α-glucosidase, β-glucosidase, β-N-acetylglucosaminidase, α-mannosidase, cathepsin B, cathepsin D, cathepsin F, palmitoyl protein thioesterase 1, and tripeptidyl peptidase 1).
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  • 文章类型: Journal Article
    2-氨基-1-甲基-6-苯基咪唑[4,5-b]吡啶(PhIP),杂环胺(HAA),在高温下加热的肉制品中发现。然而,PhIP是一种诱变和潜在的致癌化合物。决明子精液,一种药食同源植物,在中国含量丰富,用于抑制杂环胺的应用较少。
    为了在模型系统中研究决明子提取物对PhIP形成的抑制作用并阐明其抑制机制,采用70%乙醇的超声波辅助法获得决明子精液提取物,将其添加到模型系统中(0.6mmol苯丙氨酸:肌酐,1:1).通过LC-MS分析PhIP以确定抑制作用。通过将提取物添加到苯乙醛的模型混合物中,验证了该系统的副产物和PhIP抑制的机理,苯乙醛和肌酐.
    结果表明,随着决明子提取物浓度的增加,PhIP产量降低,最高抑制率为91.9%。副产品(E),在苯丙氨酸和肌酐模型系统中检测到质荷比为m/z199.9,但在其他系统中未检测到。决明子精液提取物可能与苯丙氨酸反应产生副产物(E),这防止了苯丙氨酸通过Strecker反应降解产生苯乙醛。
    决明子精液提取物消耗苯丙氨酸,这是PhIP的前身,从而抑制苯乙醛的形成并最终抑制PhIP的形成。本研究的主要目的是阐明决明子精液抑制PhIP形成的机制,并为实际控制措施建立理论和科学依据。
    UNASSIGNED: 2-Amino-1-methyl-6-phenylimidazole [4,5-b] pyridine (PhIP), a heterocyclic amine (HAA), is found in meat products heated at high temperatures. However, PhIP is a mutagenic and potential carcinogenic compound. Cassiae semen, a type of medicine and food homology plant, is abundant in China and has been less applied for inhibiting heterocyclic amines.
    UNASSIGNED: To investigate the inhibitory effect of cassiae semen extract on PhIP formation within a model system and elucidate the inhibitory mechanism, an ultrasonic-assisted method with 70% ethanol was used to obtain cassiae semen extract, which was added to a model system (0.6 mmol of phenylalanine: creatinine, 1:1). PhIP was analyzed by LC-MS to determine inhibitory effect. The byproducts of the system and the mechanism of PhIP inhibition were verified by adding the extract to a model mixture of phenylacetaldehyde, phenylacetaldehyde and creatinine.
    UNASSIGNED: The results indicated that PhIP production decreased as the concentration of cassiae semen extract increased, and the highest inhibition rate was 91.9%. Byproduct (E), with a mass-charge ratio of m/z 199.9, was detected in the phenylalanine and creatinine model system but was not detected in the other systems. The cassiae semen extract may have reacted with phenylalanine to produce byproduct (E), which prevented the degradation of phenylalanine by the Strecker reaction to produce phenylacetaldehyde.
    UNASSIGNED: Cassiae semen extract consumed phenylalanine, which is the precursor for PhIP, thus inhibiting the formation of phenylacetaldehyde and ultimately inhibiting PhIP formation. The main objective of this study was to elucidate the mechanism by which cassiae semen inhibit PhIP formation and establish a theoretical and scientific foundation for practical control measures.
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  • 文章类型: Journal Article
    The human retina is a highly structured and complex neurosensory tissue central to perceiving and processing visual signals. In a healthy individual, the close interplay between the neuronal retina, the adjacent retinal pigment epithelium and the underlying blood supply, the choriocapillaris, is critical for maintaining eyesight over a lifetime. An impairment of this delicate and metabolically highly active system, caused by genetic alteration, environmental impact or both, results in a multitude of pathological phenotypes of the retina. Understanding and treating these disease processes are motivated by a marked medical need in young as well as in older patients. While naturally occurring or gene-manipulated animal models have been used successfully in ophthalmological research for many years, recent advances in induced pluripotent stem cell technology have opened up new avenues to generate patient-derived retinal model systems. Here, we explore to what extent these cellular models can be useful to mirror human pathologies in vitro ultimately allowing to analyze disease mechanisms and testing treatment options in the cell type of interest on an individual patient-specific genetic background.
    Die menschliche Netzhaut ist ein hochstrukturiertes und komplexes neurosensorisches Gewebe, das eine zentrale Rolle in der Wahrnehmung und visuellen Verarbeitung optischer Signale spielt. Im gesunden Individuum ist das enge Zusammenspiel zwischen der neuronalen Netzhaut, dem eng benachbarten retinalen Pigmentepithel und der unmittelbaren Blutversorgung, der Choriokapillaris, kritisch für ein lebenslang intaktes Sehvermögen. Eine Beeinträchtigung dieses empfindlichen und metabolisch hochaktiven Systems, sei es durch genetische Veränderung, individuelle äußere Einflüsse oder beides, führt zu einer Vielfalt von pathologischen Phänotypen der Netzhaut. Verstehen und Behandeln dieser Krankheitsprozesse werden durch einen hohen medizinischen Bedarf an Therapieoptionen bei jungen, aber auch älteren Patienten, motiviert. Während natürlich vorkommende oder Gen-manipulierte Tiermodelle viele Jahre erfolgreich in der Gesundheitsforschung eingesetzt wurden, haben jüngere Entwicklungen im Bereich der induzierten pluripotenten Stammzell-Technologie neue, bisher nicht bekannte Möglichkeiten geschaffen, Patienten-abgeleitete Zellmodelle der Netzhaut zu generieren. In diesem Review möchten wir explorieren, in welchem Maße solche zellulären Modelle hilfreich sein können die menschlichen Pathologien in vitro abzubilden und somit deren Krankheitsmechanismen zu verstehen, was wiederum zu Behandlungsoptionen in einem definierten Zelltyp auf einem individuellen Patienten-spezifischen genetischen Hintergrund erlauben würde.
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  • 文章类型: Journal Article
    大疱性表皮松解症(EBA)是一种粘膜皮肤自身免疫性疾病,其特征是由靶向VII型胶原蛋白(COL7)的自身抗体引起。EBA的治疗是出了名的困难,中位缓解时间为9个月。在临床前EBA模型中,我们之前发现,调节性T细胞(Treg)的消耗增强了自身抗体诱导的,中性粒细胞介导的炎症和起泡。Treg耗竭小鼠中EBA严重程度的增加伴随着干扰素γ(IFN-γ)皮肤表达的增加。IFN-γ在EBA发病机制中的功能相关性尚不清楚。鉴于emapalumab,抗IFN-γ抗体,被批准用于原发性噬血细胞性淋巴组织细胞增生症患者,我们试图评估EBA中IFN-γ抑制的治疗潜力。具体来说,我们评估了IFN-γ抑制是否对临床前EBA模型中的皮肤炎症有调节作用,基于COL7抗体转移到小鼠体内。与同种型对照抗体相比,抗IFN-γ治疗可显着降低实验性EBA的临床疾病表现。临床改善与皮肤浸润减少有关,尤其是Ly6G+中性粒细胞.在分子水平上,我们注意到几乎没有变化。除了降低CXCL1血清浓度外,已被证明可以促进EBA的皮肤炎症,IFN-γ阻断后,血清和皮肤中细胞因子的表达没有改变。这证实了IFN-γ作为EBA的潜在治疗靶点,可能还有其他发病机制相似的疾病,如大疱性类天疱疮和粘膜类天疱疮。
    Epidermolysis bullosa acquisita (EBA) is a muco-cutaneous autoimmune disease characterized and caused by autoantibodies targeting type VII collagen (COL7). The treatment of EBA is notoriously difficult, with a median time to remission of 9 months. In preclinical EBA models, we previously discovered that depletion of regulatory T cells (Treg) enhances autoantibody-induced, neutrophil-mediated inflammation and blistering. Increased EBA severity in Treg-depleted mice was accompanied by an increased cutaneous expression of interferon gamma (IFN-γ). The functional relevance of IFN-γ in EBA pathogenesis had been unknown. Given that emapalumab, an anti-IFN-γ antibody, is approved for primary hemophagocytic lymphohistiocytosis patients, we sought to assess the therapeutic potential of IFN-γ inhibition in EBA. Specifically, we evaluated if IFN-γ inhibition has modulatory effects on skin inflammation in a pre-clinical EBA model, based on the transfer of COL7 antibodies into mice. Compared to isotype control antibody, anti-IFN-γ treatment significantly reduced clinical disease manifestation in experimental EBA. Clinical improvement was associated with a reduced dermal infiltrate, especially Ly6G+ neutrophils. On the molecular level, we noted few changes. Apart from reduced CXCL1 serum concentrations, which has been demonstrated to promote skin inflammation in EBA, the expression of cytokines was unaltered in the serum and skin following IFN-γ blockade. This validates IFN-γ as a potential therapeutic target in EBA, and possibly other diseases with a similar pathogenesis, such as bullous pemphigoid and mucous membrane pemphigoid.
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  • 文章类型: Journal Article
    来自英国蜂箱的同居散光中的螯合可移动手指的牙列(即,乳酸字画(Linnaeus),家蝇甘草(DeGeer),首次使用2D力学模型中的定量摩擦学措施对Tyrophagusputresquentiae(Schrank)进行了表征。根据人类使用的宏观工具,包括挂钩装置,对散光的营养功能进行了审查。钳子,剪刀,拉索和锯子.与oribatid爪和等足动物爪进行了比较。腐殖质的可移动数字形式的整体模式不仅是宏观或微观尺度上其他两个分类单元之间的均匀收缩/膨胀版本。咀嚼表面宏观粗糙度值在国际粗糙度等级编号N5-N6的范围内。与甘草和acarid(它们在地形上更相似,并且与某些珊瑚礁表面的典型粗糙度相匹配)相比,丙交酯的可移动指头具有较低的皱度值。丙交酯具有最多形的可移动数字形式。尽管丙交酯的可移动手指看起来像条状梁,但作为咀嚼工具的所有三种物种的咀嚼表面都被清晰地装饰。后者在行为上比其他两个物种有更多的机会成为多功能工具。几乎没有证据表明任何“牙齿”的“尖刺”有任何差异。与实验室培养的标本存在一些差异。乳酸链球菌和可能的腐殖质表明可以在手指上进行选择。腐殖质的螯合物表面在进化过程中发生了最多的形态变形,丙交酯的最少。与腐殖质中某些附近位置的可能更一致的变化相比,家蝇中可移动手指的重复局部表面分化是其特征。家蝇中存在有影响力的chal齿设计,但在腐殖质中更为模棱两可。甘草的咀嚼表面内的口袋(在某种程度上,对于扁桃而言)可能会产生与牙体螯合尖端规模相当的食物紧缩力。与腐殖质的放牧/剪切牙列相比,家蝇的可移动牙列更适合切碎食品(例如锯锯)。C.lactis后牙的收集“采摘器”设计与攻击蜂巢储存的花粉的Bettsia肺泡菌丝的大小相匹配。通过锯切作用积累在螯合指齿中的碎屑与观察到的最小摄入物质相匹配。当移动通过食物材料时,C的牙列应产生比G.domesticus更少的摩擦。C.乳酸是最食肉动物,在进食时可能会通过液体脱脂。污名化的牙齿确实很重要。这三个共生物种可以避免直接竞争。对今后的工作进行了详细的阐述。
    The dentition of the chelal moveable digit in cohabiting astigmatids from UK beehives (i.e., Carpoglyphus lactis (Linnaeus), Glycyphagus domesticus (DeGeer), and Tyrophagus putrescentiae (Schrank)) is characterised for the first time using quantitative tribological measures within a 2D mechanical model. The trophic function of astigmatid chelae are reviewed in terms of macroscopic tools used by humans including hooking devices, pliers, shears, rasps and saws. Comparisons to oribatid claws and isopod dactyli are made. The overall pattern of the moveable digit form of T. putrescentiae is not just a uniformly shrunken/swollen version between the other two taxa at either the macro- or micro-scale. Mastication surface macro-roughness values are in the range of international Roughness Grade Numbers N5-N6. The moveable digit of C. lactis has low rugosity values compared to the glycyphagid and acarid (which are topographically more similar and match that roughness typical of some coral reef surfaces). C. lactis has the most plesiomorphic moveable digit form. The mastication surface of all three species as a chewing tool is distinctly ornamented despite the moveable digit of C. lactis looking like a bar-like beam. The latter has more opportunities to be a multifunctional tool behaviourally than the other two species. Little evidence of any differences in the \'spikiness\' of any \'toothiness\' is found. Some differences with laboratory cultured specimens are found in C. lactis and possibly T. putrescentiae suggesting where selection on the digit may be able to occur. The chelal surface of T. putrescentiae has been deformed morphologically during evolution the most, that of C. lactis the least. Repeated localised surface differentiation is a feature of the moveable digit in G. domesticus compared to the likely more concerted changes over certain nearby locations in T. putrescentiae. An impactful chelal teeth design is present in G. domesticus but this is more equivocal in T. putrescentiae. Pockets within the mastication surface of the glycyphagid (and to some extent for the acarid) may produce foodstuff crunch forces of the scale of the chelal tips of oribatids. The moveable digit dentition of G. domesticus is adapted to shred foodstuff (like a ripsaw) more than that of the grazing/shearing dentition of T. putrescentiae. The collecting \'picker\' design of C. lactis posterior teeth matches the size of Bettsia alvei hyphae which attacks hive-stored pollen. Detritus accumulated in chelal digit gullets through a sawing action matches the smallest observed ingested material. The dentition of C. lactis should produce less friction when moving through food material than G. domesticus. C. lactis is the most hypocarnivorous and may \'skim\' through fluids when feeding. Astigmatid teeth do matter. The three commensal species can avoid direct competition. Future work is proposed in detail.
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  • 文章类型: Journal Article
    先天单核细胞可以被训练或重新编程以采用不同的记忆状态,如低度炎症和免疫衰竭,与脓毒症等急性疾病和动脉粥样硬化等慢性疾病的发病机制具有根本相关性。因此,为了更好地定义具有不同增殖潜力的关键单核细胞记忆状态,开发体外产生记忆单核细胞的方案至关重要。分化,和激活,以及潜在的机制。这里,我们描述了一种有效的体外系统,通过用巨噬细胞集落刺激因子维持骨髓来源的单核细胞(M-CSF,10ng/mL)含培养基,与其他极化剂如脂多糖(LPS)一起持续5天。这种方法可以产生高纯度的单核细胞,能够在用各种极化剂训练时表现出动态记忆行为。
    Innate monocytes can be trained or reprogrammed to adopt distinct memory states, such as low-grade inflammation and immune exhaustion, bearing fundamental relevance to the pathogenesis of both acute diseases such as sepsis as well as chronic diseases such as atherosclerosis. Therefore, it is critically important to develop a regimen for generating memory monocytes in vitro in order to better define key monocyte memory states with diverse potentials for proliferation, differentiation, and activation, as well as underlying mechanisms. Here, we describe an efficient in vitro system to propagate a large number of highly purified murine memory monocytes through sustaining bone marrow-derived monocytes with macrophage colony-stimulating factor (M-CSF, 10 ng/mL)-containing medium, together with other polarization agents such as lipopolysaccharide (LPS) for a 5-day period. This method can yield high-purity monocytes, capable of exhibiting dynamic memory behaviors upon training with various polarizing agents.
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  • 文章类型: Journal Article
    这项研究调查了两种中上层物种(哥伦比亚的Cetengerulismysticetus或carduma和Opisthonemasp。或哥伦比亚的plumuda),无论是单独还是组合,作为Leberkäse产品中外部脂肪来源的替代品。分析了三个阶段,评估生物特征比例,车身性能,和含有不同浓度鱼酱的肉面糊。进行了物理化学和仪器表征分析,以确定鱼酱类型的影响及其在最终产品中的含量。结果表明,普卢达鱼酱的蛋白质和灰分含量高于卡杜马鱼酱,并且在肉面糊中包含卡杜马鱼酱会导致液体损失更大,乳液和凝胶稳定性值较低。该研究还为可能对渔业有用的两种中上层鱼类建立了选择标准。总的来说,研究表明,可以使用这些远洋物种以相对简单的加工技术生产Leberkäse。
    This study investigated the potential use of fish paste from two pelagic species (Cetengraulis mysticetus or carduma in Colombia and Opisthonema sp. or plumuda in Colombia), either separately or combined, as a substitute for external fat sources in a Leberkäse product. Three stages were analyzed, evaluating biometric proportions, body performance, and meat batters containing different concentrations of fish pastes. Physicochemical and instrumental characterization analyses were performed to determine the effect of the type of fish paste and the level of its inclusion in the final product. Results showed that plumuda fish paste had higher protein and ash content than carduma fish paste, and the inclusion of carduma fish paste in meat batters led to a greater loss of liquid and lower emulsion and gel stability values. The study also established selection criteria for the two pelagic fish species that could be useful for the fishing industry. Overall, the study demonstrated that Leberkäse can be produced using these pelagic species with a relatively simple processing technology.
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  • 文章类型: Journal Article
    由于缺乏已建立的研究系统,对菌根共生的研究已经放缓。为了应对这一挑战,我们一直在开发Suillus,一种广泛的生态和经济相关的真菌属,主要与植物科松科有关,进入研究外生菌根(ECM)关联的模型系统。在过去的十年里,我们已经编制了广泛的基因组资源,文化图书馆,一个表型数据库,以及在有和没有树伙伴的情况下操纵Suillus真菌的协议。我们的努力已经产生了大量公开的基因组,转录组,和各自的注释,以及我们对菌根伴侣特异性和宿主交流的理解的进步,真菌和植物营养,环境适应,土壤养分循环,种间竞争,和生物入侵。这里,我们强调了由Suillus带来的最重要的最新发现,提出一套与该属合作的协议,并讨论了Suillus如何成为阐明ECM相互作用的生态学和进化的重要模型。
    Research on mycorrhizal symbiosis has been slowed by a lack of established study systems. To address this challenge, we have been developing Suillus, a widespread ecologically and economically relevant fungal genus primarily associated with the plant family Pinaceae, into a model system for studying ectomycorrhizal (ECM) associations. Over the last decade, we have compiled extensive genomic resources, culture libraries, a phenotype database, and protocols for manipulating Suillus fungi with and without their tree partners. Our efforts have already resulted in a large number of publicly available genomes, transcriptomes, and respective annotations, as well as advances in our understanding of mycorrhizal partner specificity and host communication, fungal and plant nutrition, environmental adaptation, soil nutrient cycling, interspecific competition, and biological invasions. Here, we highlight the most significant recent findings enabled by Suillus, present a suite of protocols for working with the genus, and discuss how Suillus is emerging as an important model to elucidate the ecology and evolution of ECM interactions.
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