comparative analysis

比较分析
  • 文章类型: Journal Article
    Objective: To analyze the diagnostic value of HR-VWI in intracranial arterial stenosis and occlusion and compare it with DSA. Methods: A retrospective analysis of clinical data of 59 patients with intracranial arterial stenosis in our hospital was conducted to compare the diagnostic results of the two methods for different degrees of intracranial stenosis and various morphological plaques. Results: The diagnosis of stenosis and occlusion by both methods showed no significant difference (P > 0.05). Comparison of plaque morphology detected by HR-VWI with pathological examination results showed no significant difference (P > 0.05); however, there was a significant difference between plaque morphology detected by DSA and pathological examination results (P < 0.05). Additionally, there was a significant difference between plaque morphology detected by HR-VWI and DSA (P < 0.05). Conclusion: HR-VWI technique is comparable to DSA technique in diagnosing intracranial arterial stenosis and occlusion, but it is superior to DSA in plaque morphology diagnosis.
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  • 文章类型: Journal Article
    BACKGROUND: Cyperus stoloniferus is an important species in coastal ecosystems and possesses economic and ecological value. To elucidate the structural characteristics, variation, and evolution of the organelle genome of C. stoloniferus, we sequenced, assembled, and compared its mitochondrial and chloroplast genomes.
    RESULTS: We assembled the mitochondrial and chloroplast genomes of C. stoloniferus. The total length of the mitochondrial genome (mtDNA) was 927,413 bp, with a GC content of 40.59%. It consists of two circular DNAs, including 37 protein-coding genes (PCGs), 22 tRNAs, and five rRNAs. The length of the chloroplast genome (cpDNA) was 186,204 bp, containing 93 PCGs, 40 tRNAs, and 8 rRNAs. The mtDNA and cpDNA contained 81 and 129 tandem repeats, respectively, and 346 and 1,170 dispersed repeats, respectively, both of which have 270 simple sequence repeats. The third high-frequency codon (RSCU > 1) in the organellar genome tended to end at A or U, whereas the low-frequency codon (RSCU < 1) tended to end at G or C. The RNA editing sites of the PCGs were relatively few, with only 9 and 23 sites in the mtDNA and cpDNA, respectively. A total of 28 mitochondrial plastid DNAs (MTPTs) in the mtDNA were derived from cpDNA, including three complete trnT-GGU, trnH-GUG, and trnS-GCU. Phylogeny and collinearity indicated that the relationship between C. stoloniferus and C. rotundus are closest. The mitochondrial rns gene exhibited the greatest nucleotide variability, whereas the chloroplast gene with the greatest nucleotide variability was infA. Most PCGs in the organellar genome are negatively selected and highly evolutionarily conserved. Only six mitochondrial genes and two chloroplast genes exhibited Ka/Ks > 1; in particular, atp9, atp6, and rps7 may have undergone potential positive selection.
    CONCLUSIONS: We assembled and validated the mtDNA of C. stoloniferus, which contains a 15,034 bp reverse complementary sequence. The organelle genome sequence of C. stoloniferus provides valuable genomic resources for species identification, evolution, and comparative genomic research in Cyperaceae.
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  • 文章类型: Journal Article
    The genus Euphorbia (Euphorbiaceae) has near-cosmopolitan distribution and serves as a significant resource for both ornamental and medicinal purposes. Despite its economic importance, Euphorbia\'s taxonomy has long been challenged by the intricate nature of morphological traits exhibiting high levels of convergence. While molecular markers are essential for phylogenetic studies, their availability for Euphorbia has been limited. To address this gap, we conducted comparative analyses focusing on the chloroplast (CP) genomes of nine Euphorbia species, incorporating three newly sequenced and annotated accessions. In addition, phylogenetic informativeness and nucleotide diversity were computed to identify candidate markers for phylogenetic analyses among closely related taxa in the genus. Our investigation revealed relatively conserved sizes and structures of CP genomes across the studied species, with notable interspecific variations observed primarily in non-coding regions and IR/SC borders. By leveraging phylogenetic informativeness and nucleotide diversity, we identified rpoB gene as the optimal candidate for species delimitation and shallow-level phylogenetic inference within the genus. Through this comprehensive analysis of CP genomes across multiple taxa, our study sheds light on the evolutionary dynamics and taxonomic intricacies of Euphorbia, offering valuable insights into its CP genome evolution and taxonomy.
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  • 文章类型: Journal Article
    铁线莲是铁线莲的多年生灌木,具有生态,装饰性的,和药用价值,分布在中国西北干旱半干旱地区。这项研究成功地确定了C.nannophylla的叶绿体(cp)基因组,重建铁线莲的系统发育树。该cp基因组长度为159,801bp,具有典型的四分体结构,包括一个大型的单一副本,一份小拷贝,和一对反向重复(IRa和IRb)。它包含133个独特的基因,包括89个蛋白质编码,36tRNA,和8个rRNA基因。此外,66个简单重复序列,50个分散的重复,发现24个串联重复;许多分散和串联重复在20-30bp和10-20bp之间,分别,丰富的重复序列位于大型单拷贝区域。cp基因组相对保守,特别是在红外区域,在没有观察到反转或重排的地方,进一步揭示了编码区比非编码区更保守。系统发育分析表明,南叶与胡桃属和松果属的亲缘关系更为密切。我们的分析为分子标记开发提供了参考数据,系统发育分析,人口研究,和cp基因组过程,以更好地利用C.nannophylla。
    Clematis nannophylla is a perennial shrub of Clematis with ecological, ornamental, and medicinal value, distributed in the arid and semi-arid areas of northwest China. This study successfully determined the chloroplast (cp) genome of C. nannophylla, reconstructing a phylogenetic tree of Clematis. This cp genome is 159,801 bp in length and has a typical tetrad structure, including a large single-copy, a small single-copy, and a pair of reverse repeats (IRa and IRb). It contains 133 unique genes, including 89 protein-coding, 36 tRNA, and 8 rRNA genes. Additionally, 66 simple repeat sequences, 50 dispersed repeats, and 24 tandem repeats were found; many of the dispersed and tandem repeats were between 20-30 bp and 10-20 bp, respectively, and the abundant repeats were located in the large single copy region. The cp genome was relatively conserved, especially in the IR region, where no inversion or rearrangement was observed, further revealing that the coding regions were more conserved than the noncoding regions. Phylogenetic analysis showed that C. nannophylla is more closely related to C. fruticosa and C. songorica. Our analysis provides reference data for molecular marker development, phylogenetic analysis, population studies, and cp genome processes to better utilise C. nannophylla.
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  • 文章类型: Journal Article
    背景:单国家研究记录了记忆功能和损害的不同时间趋势。比较分析是有限的。
    方法:我们使用了来自13个国家的50岁以上成年人的自我回答数据(美国:HRS,1998-2018;英格兰:ELSA,2002-2018年;11个欧洲国家:份额,2004-2019年)。记忆是通过即时和延迟单词回忆测试来衡量的。研究了未加权的年龄和性别调整的混合效应回归模型以及针对其他社会人口统计学特征和健康行为进行调整的模型。按性别分列的趋势异质性,年龄组,和教育程度被测量。
    结果:在美国,年龄调整后的10年平均测试得分改善为0.04个标准差(SD)(95%置信区间(CI):0.03,0.05),0.17SDs(95%CI:0.15,0.19)在英格兰,和0.24SDs(95%CI:0.23,0.25)在共享国家。不同性别的趋势基本相似,年龄组,和教育程度。在对潜在机制进行调整后,趋势的区域差异仍然存在。与75岁以上的年龄相比,美国和其他国家之间的差异特别大。
    结论:记忆功能的改善速度在各国之间差异很大。平均而言,研究的11个欧洲国家进步最快,其次是英格兰。美国的趋势表明有所改善,但与英国和其他欧洲国家相比,速度要慢得多。揭示时间趋势中跨国异质性的原因,特别是美国表现相对较差的原因,应该是研究和公共卫生的优先事项。
    BACKGROUND: Single-country studies document varying time trends in memory function and impairment. Comparative analyses are limited.
    METHODS: We used self-respondent data on adults aged 50+ years in 13 countries from three surveys (USA: HRS, 1998-2018; England: ELSA, 2002-2018; 11 European countries: SHARE, 2004-2019). Memory is measured with tests of immediate and delayed word recall. Unweighted age- and gender-adjusted mixed effects regression models as well as models with adjustments for additional socio-demographic characteristics and health behaviors were examined. Heterogeneity in trends by gender, age group, and educational attainment were measured.
    RESULTS: The age-adjusted 10-year improvement in average test score is 0.04 standard deviations (SDs) (95% confidence interval (CI): 0.03, 0.05) in the USA, 0.17 SDs (95% CI: 0.15, 0.19) in England, and 0.24 SDs (95% CI: 0.23, 0.25) in SHARE countries. Trends are largely similar across gender, age groups, and educational attainment. Regional differences in trends remain after adjustment for potential mechanisms. Difference between the USA and other countries is particularly large under aged 75 years compared to over aged 75 years.
    CONCLUSIONS: Pace of improvement in memory function varies strongly across countries. On average, the 11 European countries studied had the fastest improvement, followed by England. The trend in the USA indicates improvement, but at a much slower pace compared to that in England and other European countries. Uncovering the causes for the cross-country heterogeneity in time trends, and in particular the reasons for the comparatively poor performance of the USA, should be both a research and public health priority.
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  • 文章类型: Journal Article
    Assessing the extinction risk of species based on the International Union for Conservation of Nature (IUCN) Red List (RL) is key to guiding conservation policies and reducing biodiversity loss. This process is resource demanding, however, and requires continuous updating, which becomes increasingly difficult as new species are added to the RL. Automatic methods, such as comparative analyses used to predict species RL category, can be an efficient alternative to keep assessments up to date. Using amphibians as a study group, we predicted which species are more likely to change their RL category and thus should be prioritized for reassessment. We used species biological traits, environmental variables, and proxies of climate and land-use change as predictors of RL category. We produced an ensemble prediction of IUCN RL category for each species by combining 4 different model algorithms: cumulative link models, phylogenetic generalized least squares, random forests, and neural networks. By comparing RL categories with the ensemble prediction and accounting for uncertainty among model algorithms, we identified species that should be prioritized for future reassessment based on the mismatch between predicted and observed values. The most important predicting variables across models were species\' range size and spatial configuration of the range, biological traits, climate change, and land-use change. We compared our proposed prioritization index and the predicted RL changes with independent IUCN RL reassessments and found high performance of both the prioritization and the predicted directionality of changes in RL categories. Ensemble modeling of RL category is a promising tool for prioritizing species for reassessment while accounting for models\' uncertainty. This approach is broadly applicable to all taxa on the IUCN RL and to regional and national assessments and may improve allocation of the limited human and economic resources available to maintain an up-to-date IUCN RL.
    Uso del análisis comparativo del riesgo de extinción para priorizar la reevaluación de los anfibios en la Lista Roja de la UICN Resumen El análisis del riesgo de extinción de una especie con base en la Lista Roja (LR) de la Unión Internacional para la Conservación de la Naturaleza (UICN) es clave para guiar las políticas de conservación y reducir la pérdida de la biodiversidad. Sin embargo, este proceso demanda recursos y requiere de actualizaciones continuas, lo que se complica conforme se añaden especies nuevas a la LR. Los métodos automáticos, como los análisis comparativos usados para predecir la categoría de la especie en la LR, pueden ser una alternativa eficiente para mantener actualizados los análisis. Usamos a los anfibios como grupo de estudio para predecir cuáles especies tienen mayor probabilidad de cambiar de categoría en la LR y que, por lo tanto, se debería priorizar su reevaluación. Usamos las características biológicas de la especie, las variables ambientales e indicadores climáticos y del cambio de uso de suelo como predictores de la categoría en la LR. Elaboramos una predicción de ensamble de la categoría en la LR de la UICN para cada especie mediante la combinación de cuatro algoritmos diferentes: modelos de vínculo acumulativo, menor número de cuadros filogenéticos generalizados, bosques aleatorios y redes neurales. Con la comparación entre las categorías de la LR y la predicción de ensamble y con considerar la incertidumbre entre los algoritmos identificamos especies que deberían ser prioridad para futuras reevaluaciones con base en el desfase entre los valores predichos y los observados. Las variables de predicción más importantes entre los modelos fueron el tamaño de la distribución de la especie y su configuración espacial, las características biológicas, el cambio climático y el cambio de uso de suelo. Comparamos nuestra propuesta de índice de priorización y los cambios predichos en la LR con las reevaluaciones independientes de la LR de la UICN y descubrimos un buen desempeño tanto para la priorización como para la direccionalidad predicha de los cambios en las categorías de la LR. El modelo de ensamble de la categoría de la LR esa una herramienta prometedora para priorizar la reevaluación de las especies a la vez que considera la incertidumbre del modelo. Esta estrategia puede generalizarse para aplicarse a todos los taxones de la LR de la UICN y a los análisis regionales y nacionales. También podría mejorar la asignación de los recursos humanos y económicos limitados disponibles para mantener actualizada la LR de la UICN.
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  • 文章类型: Journal Article
    目标:尽管全球范围内有关迷幻药物的政策有所进步,我们对现实世界迷幻使用及其在国际司法管辖区的差异的理解仍然有限。我们实施了全球迷幻调查(GPS),以捕获有关迷幻消费者特征的信息,access,以及世界各地的使用模式。
    方法:GPS于2023年春季在线对使用(d)迷幻药的英语成年人(≥21岁)进行了在线管理。我们将调查响应分类为主要集水区(加拿大/美国,欧洲/英国,澳大利亚/新西兰,所有其他)。我们使用描述性和双变量统计数据来表征消费者的社会人口统计特征,迷幻的访问来源,和使用模式。我们使用多项逻辑回归研究了迷幻使用模式的区域差异。
    结果:我们分析了来自包括加拿大/美国在内的85个国家的6379份回复(n=4434),欧洲/英国(n=771),澳大利亚/新西兰(n=864),和其他(n=310)。psilocybin,LSD,MDMA是最常用的迷幻药,个人成长是所有集水区最常见的使用动机。迷幻使用模式存在显著的地区差异,包括使用的迷幻药类型(例如,相对于加拿大/美国,欧洲/英国和澳大利亚/新西兰的ibogaine使用较少),使用频率(例如,相对于加拿大/美国,澳大利亚/新西兰的使用频率较低),使用动机(例如,相对于加拿大/美国,欧洲/英国和其他国家的治疗用途较少),和给药方案的类型(例如,更多“微量”-加拿大/美国的剂量)。
    结论:在这个来自世界各地的成年迷幻消费者的大样本中,以提高生活为中心的罕见迷幻药使用很常见。受访者表示倾向于通过质量控制来源进行合法访问。访问和使用模式的司法管辖区差异可能反映了特定地区的法规和传统做法。进一步的研究应探索机会,通过将研究翻译成多种语言并纳入文化反思,增加非白人受访者在迷幻研究中的代表性。以社区为基础的学习发展。
    OBJECTIVE: Despite advancements in policies governing psychedelic substances globally, our understanding of real-world psychedelic use and its variations across international jurisdictions remains limited. We implemented the Global Psychedelic Survey (GPS) to capture information about psychedelic consumer characteristics, access, and usage patterns around the world.
    METHODS: The GPS was administered online in Spring 2023 to English-speaking adults (≥21 years) who use(d) psychedelics. We categorized survey responses into major catchment regions (Canada/US, Europe/UK, Australia/NZ, All Other). We used descriptive and bivariable statistics to characterize consumers\' socio-demographic characteristics, psychedelic access sources, and usage patterns. We examined regional differences in psychedelic use patterns using multinomial logistic regression.
    RESULTS: We analyzed 6379 responses from 85 countries including Canada/US (n = 4434), Europe/UK (n = 771), Australia/NZ (n = 864), and Other (n = 310). Psilocybin, LSD, and MDMA were the most used psychedelics and personal growth was the most common use motive across all catchments. There were significant regional differences in psychedelic use patterns, including types of psychedelics used (e.g., less ibogaine use in Europe/UK and Australia/NZ relative to Canada/US), frequency of use (e.g., lower frequency use in Australia/NZ relative to Canada/US), motivations for use (e.g., less therapeutic use in Europe/UK and Other relative to Canada/US), and types of dosing regimens (e.g., more \"micro\"-dosing in Canada/US).
    CONCLUSIONS: In this large sample of adult psychedelic consumers from regions around the world, infrequent psychedelic use centered around life enhancement was common. Respondents indicated preference for legal access via quality-controlled sources. Jurisdictional differences in access and usage patterns likely reflect region-specific regulations and traditional practices. Further research should explore opportunities to increase representation of non-White respondents in psychedelic research via translation of studies into several languages and incorporation of culturally reflective, community-based study development.
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  • 文章类型: Journal Article
    BarathriDermacocus是Dermacocus属中第一个报告的导致导管相关血流感染的病原体。这发生在2015年。在这项研究中,构建了BarathriDermacocus的完整基因组组装,和DermacocusbarathriFBCC-B549的完整基因组由没有质粒的单个染色体(3,137,745bp)组成。将构建的D.barathri基因组与Dermacocus属中两个密切相关的物种的基因组进行了比较。D.barathri在基因簇和同种性分析方面表现出与深渊Dermacocusabysi相似的模式。与以前的研究相反,用于预测次级代谢产物的生物合成基因簇(BGC)分析揭示了在D.barathri的完整基因组中存在LAP生物合成途径,预测次生代谢产物植物唑啉的潜在合成。此外,研究D.barathri潜在致病性的分析没有发现任何抗生素抗性基因;然而,在毒力因子数据库(VFDB)中鉴定了9种毒力因子。根据VFDB中的这些匹配结果,尽管确定了一些与生物膜形成有关的因素,需要进一步的研究来确定D.barathri对致病性的实际影响。D.barathri的完整基因组有望成为D.barathri未来研究的宝贵资源,目前缺乏足够的基因组序列信息。
    Dermacoccus barathri is the first reported pathogen within the Dermacoccus genus to cause a catheter-related bloodstream infection, which occurred in 2015. In this study, the complete genome assembly of Dermacoccus barathri was constructed, and the complete genome of Dermacoccus barathri FBCC-B549 consists of a single chromosome (3,137,745 bp) without plasmids. The constructed genome of D. barathri was compared with those of two closely related species within the Dermacoccus genus. D. barathri exhibited a pattern similar to Dermacoccus abyssi in terms of gene clusters and synteny analysis. Contrary to previous studies, biosynthetic gene cluster (BGC) analysis for predicting secondary metabolites revealed the presence of the LAP biosynthesis pathway in the complete genome of D. barathri, predicting the potential synthesis of the secondary metabolite plantazolicin. Furthermore, an analysis to investigate the potential pathogenicity of D. barathri did not reveal any antibiotic resistance genes; however, nine virulence factors were identified in the Virulence Factor Database (VFDB). According to these matching results in the VFDB, despite identifying a few factors involved in biofilm formation, further research is required to determine the actual impact of D. barathri on pathogenicity. The complete genome of D. barathri is expected to serve as a valuable resource for future studies on D. barathri, which currently lack sufficient genomic sequence information.
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  • 文章类型: Journal Article
    本研究探索了营养成分,植物化学物质分析,以及在巴基斯坦种植的两个本地品种的红色和绿色water栗(WCN)水果的抗氧化能力。因此,这项研究旨在调查最接近的成分(水分,灰,纤维,蛋白质,脂肪,和能量),物理化学性质(pH,°白利糖度,和血糖指数),矿物,和维生素。探索了WCN果实的甲醇提取物的植物化学物质(总酚和类黄酮含量),并通过1,1-二苯基-2-吡啶酰肼自由基清除能力(DPPH)和铁还原抗氧化能力(FRAP)在体外检查了抗氧化潜力。矿物的定量测定(钠,钾,钙,磷,铁,锰,铜,和锌)和维生素(维生素C,维生素B6,维生素B2,维生素B3,维生素A,和β-胡萝卜素)组合物也被评估。根据调查结果,WCN绿色和红色品种的近似组成差异很大,因为WCN绿色含有显著更高的蛋白质(1.72%),脂肪(0.65%),膳食纤维(2.21%),水分(70.23%),灰分(1.16%),和能量含量(112.8大卡)比WCN红。在WCN绿色,宏微矿物质浓度明显高于WCN红。在分析的矿物中,钾是两个品种中发现的最丰富的矿物质。维生素C的水平,B6,A,和β-胡萝卜素在WCN绿色中明显更高。在这项研究中,甲醇提取物显示出比丙酮更高的提取效率,乙醇,和蒸馏水。WCN绿的总酚含量(91.13mgGAE/g)和总黄酮含量(36.6mgQE/g)明显高于WCN红,抗氧化活性明显高于WCN红。这项研究表明,在这两个品种中,WCN绿色提取物具有针对自由基介导的健康状况的治疗潜力,并建议将这种水果用作营养食品中天然抗氧化剂的来源。
    The present study explored the nutritional composition, phytochemicals analysis, and antioxidant capacity of two indigenous varieties of red and green water chestnut (WCN) fruit grown in Pakistan. Accordingly, this study was designed to investigate the proximate composition (moisture, ash, fiber, proteins, fat, and energy), physicochemical properties (pH, °Brix, and glycemic index), minerals, and vitamins. The methanolic extracts of WCN fruits were explored for phytochemicals (total phenolic and flavonoid content), and antioxidant potential was examined in vitro by 1,1-diphenyl-2-picrylhydrazyl radical scavenging capacity (DPPH) and Ferric reducing antioxidant power (FRAP). Quantitative determination of mineral (sodium, potassium, calcium, phosphorus, iron, manganese, copper, and zinc) and vitamin (vitamin C, vitamin B6, vitamin B2, vitamin B3, vitamin A, and β-Carotene) composition was also assessed. Based on the findings, the proximate compositions of WCN green and red varieties varied greatly as WCN green contained significantly higher protein (1.72%), fat (0.65%), dietary fiber (2.21%), moisture (70.23%), ash (1.16%), and energy content (112.8 Kcal) than WCN red. In WCN green, the macro-micromineral concentrations were significantly higher than WCN red. Among the minerals analyzed, potassium was the most abundant mineral found in both varieties. Levels of vitamin C, B6, A, and β-Carotene were significantly higher in WCN green. In this study, methanolic extract showed higher extraction efficiency than acetone, ethanol, and distilled water. WCN green had a significantly higher quantum of total phenolic (91.13 mg GAE/g) and total flavonoid (36.6 mg QE/g) and presented significantly higher antioxidant activity than the WCN red. This study showed that, among both varieties, WCN green extract has therapeutic potential against free radical mediated health conditions and suggested the potential use of this fruit as a source of natural antioxidants in nutraceuticals.
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  • 文章类型: Journal Article
    背景:飞燕草属是一种分类学上复杂的属,具有重要的系统发育和经济重要性。尽管叶绿体基因组数据集很少,对该属基因组结构和选择压力的全面了解仍然未知。此外,该属中的几个类群仅在新疆发现,中国,以中国和中亚飞燕草物种的分布和多样性而闻名的地区。因此,研究该地区叶绿体基因组的特征将为该属的进化过程和系统发育关系提供有价值的见解。
    结果:在这项研究中,检查了八个新完成的叶绿体基因组,长度从153,979bp到154,284bp不等。除了这些,分析了在Delphinium中重新注释的六个先前报告的分类单元,在所有样品中鉴定了111个独特的基因。基因组结构,简单序列重复和短分散重复的分布,这些飞燕草类群的基因含量相似。九个高变基因间间隔区和蛋白质编码区,包括ndhF-trnL(TAG),rpl16-内含子,rpl33,rps15,rps18,trnK(TTT)-trnQ(TTG),trnP(TGG)-psaJ,trnT(GGT)-psbD和ycf1在13个多年生飞燕草中鉴定。所有质体基因的选择压力和密码子使用偏好在14个Delphinium类群中进行。基于14个飞燕草质体的系统发育分析,与两个乌头(毛茸茸科)物种一起作为外群类群,揭示了飞燕草的单系性质。我们的发现进一步将飞燕分为两个不同的进化枝:多年生物种(进化枝I)和一年生物种(进化枝II)。此外,与nrDNAITS拓扑相比,细胞学数据和形态特征,D.mollifolium和D.maackianum显示出可能参与杂交或多倍体化过程。除了这两个物种,多年生飞燕草(进化枝I)与利用种子形态的基于形态的系统具有更强的一致性。
    结论:这项研究首次全面分析了飞燕草类群的体体变异,根据对14个完整的石膏体的检查。飞燕草的叶绿体基因组结构与其他被子植物相似,具有典型的四体结构,具有保守的基因组排列和基因特征。此外,非编码区的变异大于叶绿体基因组的编码区。通过飞燕草质体之间的DNA序列差异以及随后的系统基因组分析,ndhF-trnL(TAG)和ycf1被鉴定为有前途的分子标记。这些高度可变的基因座对飞燕草的未来系统发育和系统地理学研究具有重要的潜力。我们基于整个质体的系统发育分析,132个独特的基因间间隔区的串联,77个独特的蛋白质编码基因和nrDNAITS的串联,所有这些都支持飞燕草的单系和多年生类群群在该属中的一个进化枝。这些发现为系统的,属的系统发育和进化研究,以备将来研究。
    BACKGROUND: Delphinium L. represents a taxonomically intricate genus of significant phylogenetic and economic importance in Ranunculaceae. Despite the existence of few chloroplast genome datasets, a comprehensive understanding of genome structures and selective pressures within the genus remains unknown. Furthermore, several taxa in this genus are exclusively found in Xinjiang, China, a region renowned for its distribution and diversity of Chinese and Central Asian Delphinium species. Therefore, investigating the features of chloroplast genomes in this area will provide valuable insights into the evolutionary processes and phylogenetic relationships of the genus.
    RESULTS: In this study, the eight newly completed chloroplast genomes are examined, ranging in length from 153,979 bp to 154,284 bp. Alongside these, analysing six previously reported taxa re-annotated in Delphinium, 111 unique genes are identified across all samples. Genome structure, distributions of simple sequence repeats and short dispersed repeats, as well as gene content are similar among these Delphinium taxa. Nine hypervariable intergenic spacers and protein coding regions, including ndhF-trnL(TAG), rpl16-intron, rpl33, rps15, rps18, trnK(TTT)-trnQ(TTG), trnP(TGG)-psaJ, trnT(GGT)-psbD and ycf1, are identified among 13 perennial Delphinium. Selective pressure and codon usage bias of all the plastid genes are performed within 14 Delphinium taxa. Phylogenetic analysis based on 14 Delphinium plastomes, alongside two Aconitum (Ranunculaceae) species serving as outgroup taxa, reveals the monophyletic nature of Delphinium. Our findings further discern Delphinium into two distinct clades: perennial species (clade I) and annual species (clade II). In addition, compared with the nrDNA ITS topology, cytological data and morphological characters, D. mollifolium and D. maackianum showed potential involvement in hybridization or polyploidization processes. Excluding these two species, the perennial Delphinium (clade I) exhibits a stronger consistency with the morphology-based system that utilized seed morphology.
    CONCLUSIONS: This study represents the first comprehensive analysis of plastomic variations among Delphinium taxa, based on the examination of 14 complete plastomes. The chloroplast genome structure of Delphinium is similar to other angiosperms and possesses the typical quadripartite structure with the conserved genome arrangement and gene features. In addition, the variation of non-coding regions is larger than coding regions of the chloroplast genome. Through DNA sequence divergence across Delphinium plastomes and subsequent phylogenomic analyses ndhF-trnL(TAG) and ycf1 are identified as promising molecular markers. These highly variable loci held significant potential for future phylogenetic and phylogeographic studies on Delphinium. Our phylogenomic analyses based on the whole plastomes, concatenation of 132 unique intergenic spacer regions, concatenation of 77 unique protein-coding genes and nrDNA ITS, all support the monophyly of Delphinium and perennial taxa clusters together into one clade within this genus. These findings provide crucial data for systematic, phylogenomic and evolutionary research in the genus for future studies.
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