Shigella

志贺氏菌
  • 文章类型: Journal Article
    背景。本系统评价和荟萃分析的目的是估计感染弯曲杆菌的个体的比例。埃希氏菌,沙门氏菌,志贺氏菌,或耶尔森氏菌会发展为反应性关节炎。方法。进行了系统的审查,包含2024年1月之前发表的英语文章,来自Embase,PubMed,Scopus,和WebofScience数据库。这篇综述包括观察性研究,这些研究报告了弯曲杆菌患者反应性关节炎(ReA)的发生,埃希氏菌,沙门氏菌,志贺氏菌,或耶尔森氏菌感染。数据提取由两名审阅者独立进行。随后,进行了随机效应荟萃分析,使用I2值评估异质性。此外,采用meta回归分析研究水平变量对观察到的异质性的潜在影响。结果。共确定了87项研究;23项报道了弯曲杆菌感染后的ReA发展,7例大肠杆菌感染后的ReA报告,30例报告沙门氏菌病后出现ReA,14在志贺氏菌病后报告了ReA,13例报告了耶尔森氏菌感染后的ReA。出现ReA的弯曲杆菌患者比例为0.03(95%CI[0.01,0.06],I2=97.62%);发生ReA的大肠埃希菌患者比例为0.01(95%CI[0.00,0.06],I2=92.78%);沙门氏菌患者比例为0.04(95%CI[0.02,0.08],I2=97.67%);志贺氏菌患者比例为0.01(95%CI[0.01,0.03],I2=90.64%);发生ReA的耶尔森氏菌患者比例为0.05(95%CI[0.02,0.13],I2=96%)。结论。沙门氏菌的比例很大,志贺氏菌,耶尔森氏菌病例导致了ReA。尽管如此,由于研究之间存在显著的异质性,因此谨慎解释研究结果非常重要.
    Background. The objective of this systematic review and meta-analysis was to estimate the proportions of individuals infected with Campylobacter, Escherichia, Salmonella, Shigella, or Yersinia who develop reactive arthritis. Methods. A systematic review was conducted, encompassing English-language articles published before January 2024, sourced from the Embase, PubMed, Scopus, and Web of Science databases. This review included observational studies that reported the occurrence of reactive arthritis (ReA) among patients with Campylobacter, Escherichia, Salmonella, Shigella, or Yersinia infections. Data extraction was carried out independently by two reviewers. Subsequently, a random-effects meta-analysis was performed, with heterogeneity assessed using the I2 value. Additionally, meta-regression was employed to investigate the potential influence of study-level variables on the observed heterogeneity. Results. A total of 87 studies were identified; 23 reported on ReA development after Campylobacter infection, 7 reported on ReA after Escherichia infection, 30 reported ReA onset after salmonellosis, 14 reported ReA after shigellosis, and 13 reported ReA after Yersinia infection. The proportion of Campylobacter patients who developed ReA was 0.03 (95% CI [0.01, 0.06], I2 = 97.62%); the proportion of Escherichia patients who developed ReA was 0.01 (95% CI [0.00, 0.06], I2 = 92.78%); the proportion of Salmonella patients was 0.04 (95% CI [0.02, 0.08], I2 = 97.67%); the proportion of Shigella patients was 0.01 (95% CI [0.01, 0.03], I2 = 90.64%); and the proportion of Yersinia patients who developed ReA was 0.05 (95% CI [0.02, 0.13], I2 = 96%). Conclusion. A significant proportion of Salmonella, Shigella, and Yersinia cases resulted in ReA. Nonetheless, it is important to interpret the findings cautiously due to the substantial heterogeneity observed between studies.
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  • 文章类型: Journal Article
    腹泻病是发病率和死亡率的重要原因,全世界。在资源有限的国家中,有症状和无症状个体的粪便样本中多种病原体的发生已被反复描述。在这项研究中,我们评估了合并病原体检测对记录症状的差异效应.在坦桑尼亚东北部农村地区的620名五岁以下儿童中进行了病例对照研究,重点是多重检测。儿童的中位年龄为11个月(IQR=7,20),男性占52.1%。病例(50.2%,n=157)的可能性低于对照组(64.5%,n=198)具有胃肠道(GIT)病原体的多重定植。儿童的年龄与携带多种GIT病原体的可能性呈正相关[OR,1.02,95%CI=1.01,1.04]。志贺氏菌属。/肠侵袭性大肠杆菌(EIEC)[OR=2.80,95%CI1.62,4.83]和诺如病毒[OR=2.04,95%CI1.23,3.39]在病例中更为常见,并与腹泻密切相关,而肠聚集性大肠杆菌(EAEC)[OR=0.23,95CI0.17-0.33]在对照组中更常见。坦桑尼亚农村五岁以下儿童的腹泻病可能是由于志贺氏菌属感染所致。/EIEC,和诺如病毒具有强烈的年龄依赖性关联。
    Diarrheal diseases are important causes of morbidity and mortality, worldwide. The occurrence of multiple pathogens in stool samples of symptomatic and asymptomatic individuals in resource-limited countries have been repeatedly described. In this study, we assessed the differentiated effects of combined pathogen detections on recorded symptoms. A case-control study was conducted among 620 under-five-year-old children in rural northeastern Tanzania with emphasis of multiple detection. The median age of children was 11 months (IQR = 7, 20), and 52.1% were male. Cases (50.2%, n = 157) were less likely than controls (64.5%, n = 198) to have multiple colonization with gastrointestinal tract (GIT) pathogens. The children\'s age was positively associated with the likelihood of harboring multiple GIT pathogens [OR, 1.02, 95% CI = 1.01, 1.04]. Shigella spp./enteroinvasive Escherichia coli (EIEC) [OR = 2.80, 95% CI 1.62, 4.83] and norovirus [OR = 2.04, 95% CI 1.23, 3.39] were more common in cases and were strongly associated with diarrhea, while enteroaggregative E. coli (EAEC) [OR = 0.23, 95%CI 0.17-0.33] were more common in controls. Diarrheal diseases in under-five children from rural Tanzania are likely to be due to infections with Shigella spp./EIEC, and norovirus with strongly age-dependent associations.
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  • 文章类型: Journal Article
    病原体的增殖和毒力取决于可用的营养物质,当病原体从宿主细胞外部(细胞外)移动到宿主细胞内部(细胞内)时,这些变化。核磁共振(NMR)是一种通用的分析方法,这有助于代谢研究。在这一章中,我们描述了如何将1HNMR与细胞感染模型相结合,以研究细菌病原体与其宿主在细胞外和细胞内区室中的代谢串扰。通过使用用稳定同位素13C标记的葡萄糖来突出中心碳代谢。
    Pathogen proliferation and virulence depend on available nutrients, and these vary when the pathogen moves from outside of the host cell (extracellular) to the inside of the host cell (intracellular). Nuclear Magnetic Resonance (NMR) is a versatile analytical method, which lends itself for metabolic studies. In this chapter, we describe how 1H NMR can be combined with a cellular infection model to study the metabolic crosstalk between a bacterial pathogen and its host both in the extracellular and intracellular compartments. Central carbon metabolism is highlighted by using glucose labeled with the stable isotope 13C.
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  • 文章类型: Journal Article
    基因的持续得失是细菌进化和环境适应的主要驱动力。从蛋白质结构域的角度研究细菌进化,这是蛋白质的基本功能和进化单位,可以更全面地了解细菌的分化和表型适应过程。因此,我们提出了一种基于系统发育树的方法,用于检测蛋白质结构域的遗传得失事件。具体来说,该方法侧重于单个领域来跟踪其演化过程或多个领域来研究它们的共同进化原理。使用122个志贺氏菌分离株验证了这种新方法。我们发现大量结构域的丢失可能是志贺氏菌进化的主要驱动力,这可以减少能源消耗,只保留最基本的功能。此外,我们观察到同时获得和丢失的域通常在功能上相关,这可以促进和加速表型进化对环境的适应。使用我们的方法获得的所有结果与以前的研究一致,这验证了我们提出的方法。
    Continuous gain and loss of genes are the primary driving forces of bacterial evolution and environmental adaptation. Studying bacterial evolution in terms of protein domain, which is the fundamental function and evolutionary unit of proteins, can provide a more comprehensive understanding of bacterial differentiation and phenotypic adaptation processes. Therefore, we proposed a phylogenetic tree-based method for detecting genetic gain and loss events in terms of protein domains. Specifically, the method focuses on a single domain to trace its evolution process or on multiple domains to investigate their co-evolution principles. This novel method was validated using 122 Shigella isolates. We found that the loss of a significant number of domains was likely the main driving force behind the evolution of Shigella, which could reduce energy expenditure and preserve only the most essential functions. Additionally, we observed that simultaneously gained and lost domains were often functionally related, which can facilitate and accelerate phenotypic evolutionary adaptation to the environment. All results obtained using our method agree with those of previous studies, which validates our proposed method.
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  • 文章类型: Journal Article
    尽管可食用的犀牛甲虫(Oryctessp。)幼虫在世界许多国家普遍消费,它们使用不同的方法制备,如煮沸,烘烤,敬酒,油炸,其对营养价值和微生物安全性的影响鲜为人知。在这里,我们研究了这些方法对Oryctessp的营养价值和微生物安全性的影响。幼虫.我们的假设是,使用这四种方法烹饪g对其营养成分,微生物负荷和多样性没有影响。分析了g的近似成分,使用标准化学程序的脂肪和氨基酸谱;以及使用标准培养程序的微生物安全性。油炸降低蛋白质和碳水化合物含量,但脂肪含量升高.沸腾降低了灰分含量,但增加了纤维和碳水化合物的成分。烘烤和烘烤增加了蛋白质和灰分含量,分别。在幼虫中检测到40种脂肪酸,其中只有5个水平没有受到烹饪方法的显著影响,而其他人的水平受到不同烹饪方法的不同影响。氨基酸谱和水平在不同的治疗中基本相当,但是所有煮熟的g中的赖氨酸和精氨酸都高于原始形式。所有的烹饪方法都消除了肠杆菌科细菌,志贺氏菌sp.和弯曲杆菌sp.从grubs。除了沸腾,所有方法都将总可行计数降低到安全水平。沙门氏菌sp.仅通过烘烤和烘烤消除;煮沸促进酵母和霉菌的生长。金黄色葡萄球菌的水平超过了所有烹饪方法的安全限制。这些发现为准备所需的营养和安全结果提供了有关方法类型的指导。
    Although edible rhinoceros beetle (Oryctes sp.) larvae are popularly consumed in many countries worldwide, they are prepared using different methods such as boiling, roasting, toasting, and deep-frying, whose effect on nutritional value and microbial safety is scarcely known. Here we investigated the effect of these methods on the nutritional value and microbial safety of Oryctes sp. larvae. Our hypothesis was that cooking the grubs using the four methods had no effect on their nutritional content and microbial loads and diversity. The grubs were analyzed for proximate composition, and fatty and amino acid profiles using standard chemical procedures; and microbial safety using standard culturing procedures. Deep-frying reduced protein and carbohydrate content, but elevated fat content. Boiling lowered ash content, but increased fibre and carbohydrate composition. Roasting and toasting increased protein and ash contents, respectively. Forty fatty acids were detected in the larvae, of which levels of only five were not significantly affected by cooking method, while the levels of the others were differentially affected by the different cooking methods. Amino acid profiles and levels were largely comparable across treatments, but lysine and arginine were higher in all cooked grubs than raw form. All the cooking methods eliminated Enterobacteriaceae, Shigella sp. and Campylobacter sp. from the grubs. Except boiling, all methods reduced total viable count to safe levels. Salmonella sp. were only eliminated by toasting and roasting; while boiling promoted growth of yeast and moulds. Staphylococcus aureus levels exceeded safety limits in all the cooking methods. These findings offer guidance on the type of method to use in preparing the grubs for desired nutritional and safety outcomes.
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  • 文章类型: Journal Article
    Vinculin是增强细胞粘附的细胞骨架接头。志贺氏菌IpaA侵袭效应子结合到黏珠蛋白以促进与头部结构域介导的寡聚化相关的黏珠蛋白超激活。我们的研究调查了预测与IpaAVBS3相互作用的vinculinD1D2亚结构域残基突变的影响。这些突变影响D1D2三聚体形成的速率,对单体消失有不同的影响,与IpaA诱导的封闭和开放D1D2构象的结构建模一致。值得注意的是,靶向封闭D1D2构象体的突变显著降低了志贺氏菌对宿主细胞的侵袭,这与靶向开放D1D2构象体的突变和后续阶段的黏珠蛋白头部结构域寡聚化相反.相比之下,所有突变都影响粘着斑(FAs)的形成,支持vinculin超激活参与这一过程。我们的发现表明,IpaA诱导的vinculin超激活主要增强了感染细胞中的基质粘附,而不是促进细菌入侵。始终如一,剪切应力研究指出了IpaA诱导的vinculin超激活在加速和增强细胞-基质粘附中的关键作用。
    Vinculin is a cytoskeletal linker strengthening cell adhesion. The Shigella IpaA invasion effector binds to vinculin to promote vinculin supra-activation associated with head-domain-mediated oligomerization. Our study investigates the impact of mutations of vinculin D1D2 subdomains\' residues predicted to interact with IpaA VBS3. These mutations affected the rate of D1D2 trimer formation with distinct effects on monomer disappearance, consistent with structural modeling of a closed and open D1D2 conformer induced by IpaA. Notably, mutations targeting the closed D1D2 conformer significantly reduced Shigella invasion of host cells as opposed to mutations targeting the open D1D2 conformer and later stages of vinculin head-domain oligomerization. In contrast, all mutations affected the formation of focal adhesions (FAs), supporting the involvement of vinculin supra-activation in this process. Our findings suggest that IpaA-induced vinculin supra-activation primarily reinforces matrix adhesion in infected cells, rather than promoting bacterial invasion. Consistently, shear stress studies pointed to a key role for IpaA-induced vinculin supra-activation in accelerating and strengthening cell-matrix adhesion.
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  • 文章类型: Journal Article
    目前可用于诊断志贺氏菌病的方法不敏感,并且有许多局限性。因此,本研究旨在鉴定志贺氏菌的细胞表面相关蛋白(SAP)中的特定抗原蛋白,这些蛋白在志贺氏菌病的替代诊断试验的开发中具有重要价值。特别是可以使用粪便样本而不是血清的样本。
    痢疾沙门氏菌临床分离株的SAP,S.boydii,福氏志贺氏菌,使用酸化的甘氨酸提取方法从在37°C下生长的过夜培养物中提取S.sonnei。通过SDS-PAGE观察蛋白质谱。为了确定某些志贺氏菌SAP特异性抗体是否存在于血清和粪便悬浮液中,Westernblot分析用于检测IgA的存在,IgG,和IgM。
    免疫印迹分析显示,来自感染福氏链球菌的患者的血清识别31种蛋白质。这些SAP抗原在志贺氏菌感染期间被宿主体液应答识别。在志贺氏菌病患者的肠道分泌物中也观察到针对这些抗原的特异性抗体。在这31种福氏杆菌蛋白中,35kDa蛋白对患者粪便悬浮液中存在的IgA特异性反应。进一步的研究说明了该蛋白在痢疾沙门氏菌中的免疫反应性,S.boydii,还有S.sonnei.这是证明粪便悬浮液中存在免疫反应性志贺氏菌SAP的第一份报告。SAPS对于直接从粪便标本中开发一种简单,快速的志贺氏菌病血清诊断方法非常有用。
    UNASSIGNED: The method currently available to diagnose shigellosis is insensitive and has many limitations. Thus, this study was designed to identify specific antigenic protein(s) among the cell surface associated proteins (SAPs) of Shigella that would be valuable in the development of an alternative diagnostic assay for shigellosis, particularly one that could be run using a stool sample rather than serum.
    UNASSIGNED: The SAPs of clinical isolates of S. dysenteriae, S. boydii, Shigella flexneri, and S. sonnei were extracted from an overnight culture grown at 37 °C using acidified-glycine extraction methods. Protein profiles were observed by SDS-PAGE. To determine if antibodies specific to certain Shigella SAPs were present in both sera and stool suspensions, Western blot analysis was used to detect the presence of IgA, IgG, and IgM.
    UNASSIGNED: Immunoblot analysis revealed that sera from patients infected with S. flexneri recognized 31 proteins. These SAP antigens are recognized by the host humoral response during Shigella infection. Specific antibodies against these antigens were also observed in intestinal secretions of shigellosis patients. Of these 31 S. flexneri proteins, the 35 kDa protein specifically reacted against IgA present in patients\' stool suspensions. Further study illustrated the immunoreactivity of this protein in S. dysenteriae, S. boydii, and S. sonnei. This is the first report that demonstrates the presence of immunoreactive Shigella SAPs in stool suspensions. The SAPSs could be very useful in developing a simple and rapid serodiagnostic assay for shigellosis directly from stool specimens.
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  • 文章类型: Journal Article
    连接志贺氏菌属的爆发。由于目前富集培养基的选择性差,对特定食物具有挑战性。我们之前已经表明,浓缩媒体,针对志贺产毒大肠杆菌菌株的基因组预测抗菌素耐药性(AMR),加强他们与食物的隔离。本研究探讨了该方法在志贺氏菌分离中的应用。21,908个已发表的S.sonnei基因组的AMR基因谱表明,赋予链霉素抗性的基因普遍存在(aadA,aph(3\")-Ib,aph(6)-Id,92.8%),磺胺类药物(sul1,sul2,74.8%)和/或甲氧苄啶(dfra,96.2%)。对一组17个爆发相关的S.sonnei菌株进行的基因组分析和抗生素敏感性测试证实了AMR基因检测与抗性表型的相关性。用高达400µg/mL的甲氧苄啶或磺胺嘧啶补充志贺氏菌肉汤(SB)并不能抑制敏感菌株的生长,而100μg/mL的链霉素增加了这种肉汤的选择性。所有三种抗生素都增加了修饰的胰蛋白胨大豆肉汤(mTSB)的选择性。基于这些结果,开发补充的培养基制剂,并通过测量与抑制志贺氏菌生长的产生细菌素的大肠杆菌菌株共同接种的培养物中的松内链球菌的相对生长来评估。S.sonnei未从在不含抗生素的SB或mTSB中生长的共培养物中回收。相比之下,以50和100μg/mL补充链霉素的培养基,25和50µg/mL的甲氧苄啶,100µg/mL的磺胺嘧啶增加了富集后培养物中S.sonnei的相对比例。在这项研究中获得的抗性S.sonnei菌株的增强恢复表明,在基因组数据可用于临床分离的S.sonnei,基于AMR基因检测的选择性富集培养基的定制可能是支持食源性志贺氏菌病暴发调查的有价值的工具。
    Linking outbreaks of Shigella spp. to specific foods is challenging due to poor selectivity of current enrichment media. We have previously shown that enrichment media, tailored to the genomically-predicted antimicrobial resistance (AMR) of Shiga toxigenic E. coli strains, enhances their isolation from foods. This study investigates the application of this approach for Shigella isolation. The AMR gene profiles of 21,908 published S. sonnei genomes indicated a high prevalence of genes conferring resistance to streptomycin (aadA, aph(3″)-Ib, aph(6)-Id, 92.8%), sulfonamides (sul1, sul2, 74.8%), and/or trimethoprim (dfrA, 96.2%). Genomic analysis and antibiotic susceptibility testing conducted with a panel of 17 outbreak-associated S. sonnei strains confirmed the correlation of AMR gene detection with resistance phenotypes. Supplementation of Shigella Broth (SB) with up to 400 µg/mL of trimethoprim or sulfadiazine did not suppress the growth of sensitive strains, whereas 100 µg/mL of streptomycin increased the selectivity of this broth. All three antibiotics increased the selectivity of modified Tryptone Soya Broth (mTSB). Based on these results, supplemented media formulations were developed and assessed by measuring the relative growth of S. sonnei in cultures coinoculated with a strain of bacteriocin-producing E. coli that is inhibitory to Shigella growth. S. sonnei was not recovered from cocultures grown in SB or mTSB without antibiotics. In contrast, media supplemented with streptomycin at 50 and 100 µg/mL, trimethoprim at 25 and 50 µg/mL, and sulfadiazine at 100 µg/mL increased the relative proportion of S. sonnei in postenrichment cultures. The enhanced recovery of resistant S. sonnei strains achieved in this study indicates that, in cases where genomic data are available for clinical S. sonnei isolates, customization of selective enrichment media based on AMR gene detection could be a valuable tool for supporting the investigation of foodborne shigellosis outbreaks.
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  • 文章类型: Journal Article
    食源性感染仍然是国际一级的主要公共卫生问题。在埃塞俄比亚等发展中国家,这个问题变得更加严重。
    本研究旨在研究沙门氏菌和志贺氏菌和肠道寄生虫的流行情况。以及埃塞俄比亚西北部冈达尔大学自助餐厅的食品处理人员对抗生素的耐药性模式和相关因素。
    一项基于机构的横断面研究于2021年2月至6月在冈达大学自助餐厅进行。使用结构化问卷收集与研究参与者的社会人口统计学特征和卫生习惯相关的数据。从食品处理人员收集了总共290个粪便样品。使用培养和常规生化测试来分离沙门氏菌和志贺氏菌。湿支架,甲酸醚浓度,和KatoKatz技术用于鉴定肠道寄生虫。此外,使用纸片扩散法进行药物敏感性试验.使用SPSS版本26进行统计分析。
    分析了290名食品处理人员的粪便样本,27例(9.3%)沙门氏菌和志贺氏菌均呈阳性。沙门氏菌和志贺氏菌的流行率分别为16种(5.5%)和11种(3.8%),分别。大多数分离的病原菌对四环素19耐药(70.4%),甲氧苄啶/磺胺甲恶唑19(70.4%)。耐多药志贺氏菌和沙门菌的总检出率为59.3%。此外,57(19.7%)的参与者对一种或多种肠道寄生虫呈阳性。最普遍的肠道寄生虫病是溶组织大肠杆菌/dispar22(7.6%),其次是G.Lamblia13(4.5%),和A虫11(3.8)使用厕所后不洗手(AOR:4.42,95%CI:1.57,10.56),和食用未经巴氏灭菌的牛奶(AOR:3.14,95%CI:1.65,3.96),是与沙门氏菌患病率显着相关的因素,和志贺氏菌感染。同样,上厕所后不洗手(AOR:2.19,95%CI:1.0,1.4),和食用未经巴氏灭菌的牛奶(AOR:10.4,95%CI:3.8,28.8),是与肠道寄生虫感染患病率显著相关的因素。
    肠道寄生虫的患病率,沙门氏菌,志贺氏菌种类很高。因此,必须实施一项包括持续微生物监测的公共卫生政策。
    Food-borne infections continue to be a major public health problem at the international level. The issue becomes more serious in developing countries like Ethiopia.
    This study aimed to examine the prevalence of Salmonella and Shigella species and intestinal parasites, as well as antimicrobial resistance patterns and associated factors among food handlers at the University of Gondar cafeteria in northwest Ethiopia.
    An institutional-based cross-sectional study was conducted from February to June 2021 in the University of Gondar cafeterias. Data related to the socio-demographic characteristics and hygienic practices of study participants were collected using structured questionnaires. A total of 290 stool samples were collected from food handlers. Culture and conventional biochemical tests were used to isolate the Salmonella and the Shigella species. Wet mount, Formol-ether concentration, and Kato Katz techniques were applied to identify intestinal parasites. Additionally, drug susceptibility tests were performed using the disk diffusion method. Statistical analysis was done using SPSS version 26.
    Of 290 food handlers\' stool samples analyzed, Twenty-seven 27 (9.3%) were positive for both Salmonella and Shigella species. The prevalence of Salmonella and Shigella species was 16 (5.5%) and 11 (3.8%), respectively. Most of the isolated pathogens were resistant to tetracycline 19 (70.4%), and trimethoprim/sulphamethoxazole 19 (70.4%). The overall rate of multi-drug resistant Shigella and Salmonella isolate was 59.3%. Besides, Fifty-seven 57 (19.7%) of the participants were positive for one or more intestinal parasites. The most prevalent intestinal Parasitosis was E. histolytica/dispar 22 (7.6%), followed by G. lamblia 13 (4.5%), and Ascaris lumbricoides 11 (3.8) not washing hands after using the toilet (AOR: 4.42, 95% CI: 1.57, 10.56), and consuming unpasteurized milk (AOR: 3.14, 95% CI: 1.65, 3.96), were factors significantly associated with the prevalence of Salmonella, and Shigella infection. Similarly, not washing hands after using the toilet (AOR: 2.19, 95% CI: 1.0, 1.4), and consuming unpasteurized milk (AOR: 10.4, 95% CI: 3.8, 28.8), were factors significantly associated with the prevalence of intestinal parasites infection.
    The prevalence of intestinal parasites, Salmonella, and Shigella species was high. Therefore, it is imperative to implement a public health policy that includes ongoing microbiological surveillance.
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