PMA

PMa
  • 文章类型: Journal Article
    增强妇女权能和促进性别平等对于加快脆弱国家的可持续发展至关重要,包括刚果民主共和国(DRC)。然而,在这些背景下,对决定女性赋权的因素缺乏现有的知识或理解。我们旨在评估金沙萨的妇女赋权,并确定其相关因素,刚果民主共和国。我们分析了2021年绩效监测评估(PMA)调查的数据。本研究保留了1365名育龄妇女的样本。与家庭决策有关的20个赋权项目,避孕使用,并考虑了丈夫/伴侣的影响。我们计算了平均女性赋权指数(aWEI),利用主成分分析(PCA)确定了女性赋权变量,并通过多元二元逻辑回归的性能确定前三个主成分的相关因素。在金沙萨,总体aWEI估计为0.65。家庭决策低(0.34),丈夫/伴侣影响域高(0.93)。确定并命名了三个主成分,包括没有威胁,控制性行为,参与决策。与这些组件相关的因素是可以上网,与伴侣自由结合,40-49岁,居住在非贫民窟地区。增加获取信息的机会将使金沙萨的妇女能够对自己的生活做出战略性决定,使自己和他人受益。
    Empowering women and promoting gender equality is crucial for accelerating sustainable development in fragile countries, including the Democratic Republic of Congo (DRC). However, there is scarce existing knowledge or understanding of the factors determining women\'s empowerment in these contexts. We aimed to assess women\'s empowerment and determine its associated factors in Kinshasa, DRC. We analyzed data from the 2021 Performance Monitoring Assessment (PMA) survey. A sample of 1365 women of childbearing age was retained for this study. Twenty empowerment items related to household decision-making, contraception use, and husband/partner influence were considered. We calculated the average women\'s empowerment index (aWEI), identified the women\'s empowerment variables using principal component analysis (PCA), and determined the associated factors for the first three principal components through the performance of multivariate binary logistic regression. In Kinshasa, the overall aWEI was estimated at 0.65. It was low for household decision-making (0.34) and high for husband/partner influence domains (0.93). Three principal components were identified and named, including the absence of threats, control of sexuality, and participation in decision-making. The factors associated with these components were having internet access, being in free union with a partner, being aged 40-49 years, and residing in a non-slum area. Increasing access to information would enable women in Kinshasa to make strategic decisions about their lives, benefiting themselves and others.
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  • 文章类型: Journal Article
    人单核细胞THP-1细胞系是用于研究单核细胞到巨噬细胞分化的最常规的体外模型。尽管这种模式被广泛使用,使用佛波醇12-肉豆蔻酸酯-13-乙酸酯(PMA)或1,25-二羟维生素D3(1,25D3)的分化方案在研究之间差异很大。鉴于分化方案的差异有可能影响所产生的巨噬细胞的特征,我们旨在通过评估形态学变化以及基因和细胞表面巨噬细胞标志物表达的变化,评估三种不同THP-1分化方案的疗效.THP-1细胞用5nMPMA分化,10nM1,25D3或其组合,接下来是一个休息时间。结果表明,所有三个方案显着增加巨噬细胞标记的表达,CD11b(p<0.001)和CD14(p<0.010)。尽管如此,单独暴露于1,25D3的THP-1细胞没有采用与巨噬细胞相关的形态学和表达特征。需要PMA来产生这些特性,发现在1,25D3的存在下更明显。具有1,25D3分化的THP-1细胞的PMA-和PMA均能够进行M1和M2巨噬细胞极化,尽管极化相关标志物的基因表达在具有1,25D3分化的THP-1细胞的PMA中最为明显。此外,PMA与1,25D3的组合似乎支持对特定极化状态的承诺过程.
    The human monocytic THP-1 cell line is the most routinely employed in vitro model for studying monocyte-to-macrophage differentiation. Despite the wide use of this model, differentiation protocols using phorbol 12-myristate-13-acetate (PMA) or 1,25-dihydroxyvitamin D3 (1,25D3) vary drastically between studies. Given that differences in differentiation protocols have the potential to impact the characteristics of the macrophages produced, we aimed to assess the efficacy of three different THP-1 differentiation protocols by assessing changes in morphology and gene- and cell surface macrophage marker expression. THP-1 cells were differentiated with either 5 nM PMA, 10 nM 1,25D3, or a combination thereof, followed by a rest period. The results indicated that all three protocols significantly increased the expression of the macrophage markers, CD11b (p < 0.001) and CD14 (p < 0.010). Despite this, THP-1 cells exposed to 1,25D3 alone did not adopt the morphological and expression characteristics associated with macrophages. PMA was required to produce these characteristics, which were found to be more pronounced in the presence of 1,25D3. Both PMA- and PMA with 1,25D3-differentiated THP-1 cells were capable of M1 and M2 macrophage polarization, though the gene expression of polarization-associated markers was most pronounced in PMA with 1,25D3-differentiated THP-1 cells. Moreover, the combination of PMA with 1,25D3 appeared to support the process of commitment to a particular polarization state.
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  • 文章类型: Journal Article
    SARS-CoV-2是导致COVID-19大流行的高度传染性病毒。因此,评估SARS-CoV-2感染的风险非常重要,尤其是在持续阳性的患者中。快速区分传染性病毒和非传染性病毒有助于确定预防,control,治疗措施是必要的。为此,开发并使用了一种方法,该方法涉及用50µM的单叠氮丙啶(PMAxx,DNA嵌入物)与数字液滴PCR(ddPCR)组合。对PMAxx治疗前后的40只鼻咽拭子(NPS)进行了ddPCR方法,显示病毒载量减少,平均为0.9Log拷贝/mL(SD±0.6Log拷贝/mL)。此外,根据SARS-CoV-2RNA的Ct值(Ct<20,2030)对六个样品进行分层,并进行分析以比较通过ddPCR与病毒分离和阴性链PCR获得的结果。在PMAxx治疗后通过ddPCR发现的五个样本中,其中两个样本显示出最高的治疗后SARS-CoV-2负荷。从两个样品中体外分离病毒,并检测负链链。在三个NPS样本中,SARSCoV-2在治疗后处于低水平;它不是在体外分离的,and,当检测到,链是阴性的。我们的结果表明,所建立的方法可用于确定阳性NPS样品中的SARS-CoV-2是否完整并能够引起感染。
    SARS-CoV-2 is a highly infectious virus responsible for the COVID-19 pandemic. Therefore, it is important to assess the risk of SARS-CoV-2 infection, especially in persistently positive patients. Rapid discrimination between infectious and non-infectious viruses aids in determining whether prevention, control, and treatment measures are necessary. For this purpose, a method was developed and utilized involving a pre-treatment with 50 µM of propidium monoazide (PMAxx, a DNA intercalant) combined with a digital droplet PCR (ddPCR). The ddPCR method was performed on 40 nasopharyngeal swabs (NPSs) both before and after treatment with PMAxx, revealing a reduction in the viral load at a mean of 0.9 Log copies/mL (SD ± 0.6 Log copies/mL). Furthermore, six samples were stratified based on the Ct values of SARS-CoV-2 RNA (Ct < 20, 20 < Ct < 30, Ct > 30) and analyzed to compare the results obtained via a ddPCR with viral isolation and a negative-chain PCR. Of the five samples found positive via a ddPCR after the PMAxx treatment, two of the samples showed the highest post-treatment SARS-CoV-2 loads. The virus was isolated in vitro from both samples and the negative strand chains were detected. In three NPS samples, SARS CoV-2 was present post-treatment at a low level; it was not isolated in vitro, and, when detected, the strand was negative. Our results indicate that the established method is useful for determining whether the SARS-CoV-2 within positive NPS samples is intact and capable of causing infection.
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  • 文章类型: Journal Article
    背景:早期性开始对健康不利,社会,以及对妇女和后代的经济后果。在全球范围内,早期性开始的趋势正在增加,导致更高的性传播疾病和意外怀孕率。在过去四年中,埃塞俄比亚遭受了各种灾难的挑战,这些灾难使妇女处于脆弱状态,并使她们面临更高的早期性行为风险。冲突后大流行环境中早期性启动的空间模式和因素尚不清楚。因此,这项研究旨在绘制空间模式,并确定冲突后设置中的决定因素。
    方法:该研究是根据PMA2021横断面调查的次要数据进行的,该调查于2021年11月至2022年1月在全国范围内进行,该调查处于大流行后和战后时期。分析中包括6,036名育龄女性的总加权样本。使用ArcGISPro和SaTScan软件进行空间分析。使用多水平逻辑回归模型来估计独立变量对个体和社区水平因素的早期性开始的影响。据报道,具有95%置信区间的调整后的优势比表明了关联的强度和统计意义。
    结果:早期性开始的空间分布在埃塞俄比亚,总体Moran\sI指数值为0.09,Z评分为6.01(p值<0.001)。在阿姆哈拉地区的东Gojjam地区发现了重要的热点,贝尔,Arsi,西哈拉格,Oromia地区的EastWellega和HoroGudruWellega地区。在初等教育的女性中,早期性开始的几率更高(AOR=1.23,95CI:1.03,1.47),中等或以上学历(AOR=4.36,95CI:3.49,5.44),26至25岁的女性(AOR=1.91,95CI:1.61,2.26),36至49岁的女性(AOR=1.51,95CI:1.24,1.84)。然而,农村居民妇女(AOR=0.53,95CI:0.35,0.81)和生活在5至7个家庭中的妇女(AOR=0.79,95CI:0.68,0.92),7名以上成员(AOR=0.63,95CI:0.49,0.81)。
    结论:早期性启动的空间分布在埃塞俄比亚呈聚集状态。应采取干预措施,通过向高风险地区调动资源来消除观察到的差异。针对这一问题的政策和干预措施也可以考虑已确定的相关因素,以取得更好的结果。
    BACKGROUND: Early sexual initiation has negative health, social, and economic consequences for both women and future generations. The trend of early sexual initiation is increasing globally, leading to higher rates of sexually transmitted diseases and unplanned pregnancies. Ethiopia has been challenged various disasters that makes women vulnerable and position them at heightened risk of early sexual initiation in the last four years. The spatial patterns and factors of early sexual initiation in the post-conflict-post pandemic settings is not well understood. Hence this research aimed at mapping Spatial Patterns and identifying determinant factors in the Post-COVID-Post-Conflict Settings.
    METHODS: The study was conducted on secondary data from the PMA 2021 cross-sectional survey which conducted nationally from November 2021 to January 2022 which is in the post pandemic and post-war period. Total weighted sample of 6,036 reproductive age women were included in the analysis. ArcGIS Pro and SaTScan software were used to handle spatial analysis. Multilevel logistic regression model was used to estimate the effects of independent variables on early sexual initiation at individual and community level factors. Adjusted odds ratio with the 95% confidence interval was reported to declare the strength and statistical significance of the association.
    RESULTS: The spatial distribution of early sexual initiation was clustered in Ethiopia with a global Moran\'s I index value of 0.09 and Z-score 6.01 (p-value < 0.001).Significant hotspots were detected in East Gojjam zone of Amhara region, Bale, Arsi, West Hararge, East Wellega and Horo Gudru Wellega zones of Oromia region. The odds of having early sexual initiation was higher in women with primary education (AOR = 1.23, 95%CI: 1.03, 1.47), secondary or above education (AOR = 4.36, 95%CI: 3.49, 5.44), Women aged 26 to 25 (AOR = 1.91, 95%CI: 1.61, 2.26), women aged 36 to 49(AOR = 1.51, 95%CI: 1.24, 1.84). However, there was a significant lower likelihood of early sexual initiation in rural resident women (AOR = 0.53, 95%CI: 0.35, 0.81) and women living in 5 to 7 family size (AOR = 0.79, 95%CI: 0.68, 0.92), and more than 7 members (AOR = 0.63, 95%CI: 0.49, 0.81).
    CONCLUSIONS: The spatial distribution of early sexual initiation was clustered in Ethiopia. Interventions should be taken to eliminate the observed variation by mobilizing resources to high-risk areas. Policies and interventions targeted to this problem may also take the identified associated factors into account for better results.
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  • 文章类型: Journal Article
    医疗器械可以寻求专利期限延长(PTE),扩大市场独占性,以弥补与临床试验和监管审查相关的延误。制药公司通常使用PTE,但是医疗器械公司对它们的使用还不清楚。
    我们使用《联邦公报》上公布的数据库和专利商标局公布的列表,检查了1984年至2024年间医疗器械公司使用PTE的情况。
    只有178个医疗设备提交与PTE应用程序相关联。它们主要集中在与15个医学专业相关的116个产品代码中;近一半与心血管设备相关。在过去的十年中,数字显着增加。成功的申请平均恢复了987天。
    专利恢复机会似乎没有得到充分利用。目前还不清楚一些公司是否没有意识到它承诺的机会,或者它是否不满足他们的需求。设备与制药行业的不同业务特征和营销策略可能会降低PTE计划对这些类型医疗产品的有用性。然而,这一发现表明,在竞争激烈的市场中经营的一小部分制造商更普遍地采用专利扩展策略,这表明当竞争加剧时,竞争优势显著。
    UNASSIGNED: Medical devices can seek patent term extensions (PTEs), which extend market exclusivity to compensate for delays related to clinical trials and regulatory review. Pharmaceutical companies commonly use PTEs, but their use by medical device companies has not been clear.
    UNASSIGNED: We examined the use of PTEs by medical device companies between 1984 and 2024 using a database published in the Federal Register and a list published by the Patent and Trademark Office.
    UNASSIGNED: Only 178 medical device submissions were linked to a PTE application. They were mostly concentrated in 116 product codes associated with 15 medical specialties; nearly half were associated with cardiovascular devices. Numbers increased significantly in the past decade. Successful applications restored 987 days on average.
    UNASSIGNED: The patent restoration opportunity appears underutilized. It is unclear whether some companies do not recognize the opportunity it promises, or whether it does not meet their needs. Different business features and marketing strategies in device versus pharmaceutical industries may decrease the usefulness of the PTE program for these types of medical products. However, the finding that a small subset of manufacturers operating in competitive markets adopted patent extension strategies more commonly suggests a significant competitive advantage when competition increases.
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  • 文章类型: Journal Article
    本研究探讨了马中性粒细胞中中性粒细胞胞外捕获(NET)的形成,这对于消除感染至关重要,并且与各种马炎性疾病有关。我们研究了马中性粒细胞响应刺激而释放NET的分子途径。我们用PMA,A23187,LPS,PAF,OZ,和细胞因子,观察NET释放以响应PMA,PAF,A23187相比之下,LPS,OZ,并且所测试的细胞因子不诱导DNA释放或不一致地诱导组蛋白4的瓜氨酸化。肽基精氨酸脱亚胺酶抑制完全停止NET释放,而NADPH氧化酶和线粒体活性氧仅在PMA诱导的NETs中起作用。中性粒细胞弹性蛋白酶抑制适度影响PAF诱导的NET释放,但不影响PMA或A23187诱导的NET,而髓过氧化物酶对NET的释放没有贡献。我们希望为未来研究NETs在马健康和疾病中的作用以及寻找潜在的治疗靶标提供基础。
    This study explores Neutrophil Extracellular Trap (NET) formation in equine neutrophils, which is crucial for eliminating infections and is implicated in various equine inflammatory diseases. We investigated the molecular pathways involved in NET release by equine neutrophils in response to stimuli. We use PMA, A23187, LPS, PAF, OZ, and cytokines, observing NET release in response to PMA, PAF, and A23187. In contrast, LPS, OZ, and the cytokines tested did not induce DNA release or did not consistently induce citrullination of histone 4. Peptidyl-arginine deiminase inhibition completely halted NET release, while NADPH oxidase and mitochondrial reactive oxygen species only played a role in PMA-induced NETs. Neutrophil elastase inhibition modestly affected PAF-induced NET liberation but not in PMA or A23187-induced NET, while myeloperoxidase did not contribute to NET release. We expect to provide a foundation for future investigations into the role of NETs in equine health and disease and the search for potential therapeutic targets.
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  • 文章类型: Journal Article
    循环粒细胞感知为具有预定免疫反应的细胞,主要由病原体触发,认识到它们的功能异质性和适应性,特别是在中性粒细胞亚群内。这些细胞参与自身免疫性葡萄膜炎的病理生理学已经变得越来越清楚,然而,他们的确切作用仍然难以捉摸。我们使用马自身免疫介导的复发性全葡萄膜炎模型来研究粒细胞在不同炎症环境中的早期反应。为此,我们对来自健康和患病马的粒细胞进行了差异蛋白质组学,或PMA。与健康的马相比,复发性葡萄膜炎模型的粒细胞显着改变了384种蛋白质的细胞丰度,每种兴奋剂都有相当多的具体变化。为了更深入地了解这些兴奋剂特异性蛋白质组变化在ERU发病机理中的功能影响,我们使用独创性途径分析进行途径富集。这导致了每种兴奋剂的特定反应模式,IL8主要促进I类MHC介导的抗原加工和呈递,LPS增强磷脂生物合成过程,和PMA,明确诱导中性粒细胞脱颗粒。这些发现揭示了中性粒细胞的显著分化反应,在T细胞驱动的疾病中提供对其功能异质性的有价值的见解。原始数据可通过具有标识符PXD013648的ProteomeXchange获得。
    The perception of circulating granulocytes as cells with a predetermined immune response mainly triggered by pathogens is evolving, recognizing their functional heterogeneity and adaptability, particularly within the neutrophil subset. The involvement of these cells in the pathophysiology of autoimmune uveitis has become increasingly clear, yet their exact role remains elusive. We used an equine model for autoimmune-mediated recurrent pan-uveitis to investigate early responses of granulocytes in different inflammatory environments. For this purpose, we performed differential proteomics on granulocytes from healthy and diseased horses stimulated with IL8, LPS, or PMA. Compared to healthy horses, granulocytes from the recurrent uveitis model significantly changed the cellular abundance of 384 proteins, with a considerable number of specific changes for each stimulant. To gain more insight into the functional impact of these stimulant-specific proteome changes in ERU pathogenesis, we used Ingenuity Pathway Analysis for pathway enrichment. This resulted in specific reaction patterns for each stimulant, with IL8 predominantly promoting Class I MHC-mediated antigen processing and presentation, LPS enhancing processes in phospholipid biosynthesis, and PMA, clearly inducing neutrophil degranulation. These findings shed light on the remarkably differentiated responses of neutrophils, offering valuable insights into their functional heterogeneity in a T-cell-driven disease. Raw data are available via ProteomeXchange with identifier PXD013648.
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  • 文章类型: Journal Article
    免疫排斥是器官移植中的一个重要问题,因为它可能导致移植器官的损伤和衰竭。为了预防或治疗免疫排斥,移植受者通常服用免疫抑制药物。他克莫司(FK506)是一种广泛应用于器官移植的免疫抑制剂。中性粒细胞胞外陷阱(NETs)的过度形成可导致炎症和组织损伤。虽然NET发挥抗菌作用,他们的生产过剩可能是有害的。探讨FK506抑制免疫排斥反应的机制,我们利用HL-60细胞,使用DMSO将其分化为嗜中性粒细胞,并用佛波醇肉豆蔻酸酯乙酸酯(PMA)诱导形成NETs,一种非常有效且经常使用的诱导NET形成的药物。通过用FK506比较治疗前和后处理,我们检查了FK506是否影响NETs的形成。采用了各种实验技术,包括用于可视化细胞NET的共聚焦成像,qPCR和蛋白质印迹用于基因和蛋白质表达分析,用于蛋白质含量检测的ELISA,和LC-MS/MS用于甲基化检测。在我们的研究中,我们发现FK506可以增强DNA甲基化,这可能有助于减少NET。与甲基化相关的基因和蛋白质,即,DNMT3B和TET3与甲基化显著相关。基因和蛋白质的一致变化表明DNMT3B和TET3是受FK506影响的关键因素,导致DNA甲基化增强和PMA诱导的NET产生的潜在抑制。总之,我们已经确定了FK506通过增强DNA甲基化抑制NET产生的新机制。这一发现突出了FK506免疫抑制作用的一个新方面。我们的结果为临床研究提供了有价值的见解,免疫抑制,和器官保存策略。
    Immune rejection is a significant concern in organ transplantation, as it can lead to damage to and failure of the transplanted organ. To prevent or treat immune rejection, transplant recipients are commonly administered immunosuppressive drugs. Tacrolimus (FK506) is a widely used immunosuppressive drug in organ transplantation. The excessive formation of neutrophil extracellular traps (NETs) can contribute to inflammation and tissue damage. Although NETs play an antimicrobial role, their overproduction can be harmful. To investigate the mechanism by which FK506 suppresses immune rejection, we utilized HL-60 cells, which were differentiated into neutrophils using DMSO and induced to form NETs with phorbol myristate acetate (PMA), a very efficient and frequently used drug for inducing NET formation. By comparing pre- and post-treatment with FK506, we examined whether FK506 affects the formation of NETs. Various experimental techniques were employed, including confocal imaging for visualizing cell NETs, qPCR and Western blotting for gene and protein expression analyses, ELISAs for protein content detection, and LC-MS/MS for methylation detection. In our study, we discovered that FK506 can enhance DNA methylation, which likely contributes to the reduction in NETs. Genes and proteins related to methylation, namely, DNMT3B and TET3, exhibited significant correlations with methylation. Consistent changes in both genes and proteins suggest that DNMT3B and TET3 are key factors that are influenced by FK506, resulting in enhanced DNA methylation and the potential inhibition of PMA-induced NET production. In summary, we have identified a novel mechanism by which FK506 inhibits NET production through the enhancement of DNA methylation. This finding highlights a new aspect of FK506\'s immunosuppressive effect. Our results provide valuable insights for clinical research, immunosuppression, and organ preservation strategies.
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  • 文章类型: Journal Article
    皮肤屏障的稳态对于维持正常皮肤功能至关重要。GasderminA(GSDMA)在皮肤中高表达,与许多皮肤病有关。如黑色素瘤和牛皮癣。在老鼠身上,GSDMA由三个基因同源物编码,即Gsdma1、Gsdma2和Gsdma3。尽管Gsdma3功能获得突变会导致脱发和皮肤炎症,Gsdma3缺陷型小鼠在皮肤或毛发结构中没有显示表型。探讨GSDMA的生理功能,我们产生了常规Gsdma1/2/3敲除(KO)小鼠。我们发现Gsdma1/2/3KO小鼠显示出由佛波醇12-肉豆蔻酸酯13-乙酸酯(PMA)诱导的表皮增生和炎症显着降低。此外,我们发现表皮增生的缓解依赖于角质形成细胞特异性表达的Gsdma1/2/3。机械上,Gsdma1/2/3耗竭下调表皮生长因子受体(EGFR)配体,导致EGFR-Stat3/Akt信号降低。这些结果表明Gsdma1/2/3的消耗通过抑制EGFR-Stat3/Akt途径部分地减轻了PMA诱导的表皮增生。
    Homeostasis of the skin barrier is essential for maintaining normal skin function. Gasdermin A (GSDMA) is highly expressed in the skin and associated with many skin diseases, such as melanoma and psoriasis. In mice, GSDMA is encoded by three gene homologues, namely Gsdma1, Gsdma2, and Gsdma3. Although Gsdma3 gain-of-function mutations cause hair loss and skin inflammation, Gsdma3-deficient mice do not show any visible phenotypes in skin and hair structures. To explore the physiological function of GSDMA, we generated conventional Gsdma1/2/3 knockout (KO) mice. These mice showed significantly alleviated epidermal hyperplasia and inflammation induced by phorbol 12-myristate 13-acetate (PMA). Furthermore, the alleviation of epidermal hyperplasia depended on the expression of Gsdma1/2/3 specifically in keratinocytes. Mechanistically, Gsdma1/2/3 depletion downregulated epidermal growth factor receptor (EGFR) ligands, leading to the decreased EGFR-Stat3/Akt signalling. These results demonstrate that depletion of Gsdma1/2/3 alleviates PMA-induced epidermal hyperplasia partially by inhibiting the EGFR-Stat3/Akt pathway.
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  • 文章类型: Journal Article
    背景:基于核酸的分析方法极大地扩展了我们对全球原核生物多样性的理解,然而,标准的元编码方法没有提供关于细菌最基本生理状态的信息,可行性。巩膜珊瑚具有复杂的微生物组,其中细菌共生体在维持整个生物的健康和功能中起着关键作用。然而,珊瑚中既有死细菌,也有活细菌。前者可能是珊瑚以细菌为食的结果,珊瑚组织中从高氧状态到低氧状态的快速波动,珊瑚粘液中存在抗菌化合物,和大量的裂解噬菌体。
    结果:通过将单叠氮丙啶(PMA)处理与对六种珊瑚物种的高通量测序相结合(Acroporaloripes,A.millepora,A.肯蒂,桔梗,青霉,和Poriteslutea),我们能够从无活力的微生物DNA中获得有关细菌群落的信息,而噪音很小。与仅对A.loripes进行PMA处理的组织相比,未处理的16SrRNA基因的代谢编码显示出显着更高的群落均匀度(85%)和物种多样性(31%)。虽然PMA处理的珊瑚在观察到的ASV数量方面与未处理的样品没有显着差异,>30%的ASV仅在未经处理的样品中被鉴定,表明它们起源于无细胞/非活DNA。Further,PMA处理和未处理的A.loripes和P.acuta的细菌群落结构显着不同,这表明来自非活微生物的DNA可以偏向细菌多样性低的珊瑚物种的群落组成数据。
    结论:我们的研究与珊瑚和其他宿主生物的微生物组研究高度相关,因为它提供了一种解决方案,可以在复杂的群落中排除不可行的DNA。这些结果为宿主相关微生物群的动态特性提供了新的见解,并强调了在分析代谢编码或下一代测序数据集时应用多功能工具的重要性。
    BACKGROUND: Nucleic acid-based analytical methods have greatly expanded our understanding of global prokaryotic diversity, yet standard metabarcoding methods provide no information on the most fundamental physiological state of bacteria, viability. Scleractinian corals harbour a complex microbiome in which bacterial symbionts play critical roles in maintaining health and functioning of the holobiont. However, the coral holobiont contains both dead and living bacteria. The former can be the result of corals feeding on bacteria, rapid swings from hyper- to hypoxic conditions in the coral tissue, the presence of antimicrobial compounds in coral mucus, and an abundance of lytic bacteriophages.
    RESULTS: By combining propidium monoazide (PMA) treatment with high-throughput sequencing on six coral species (Acropora loripes, A. millepora, A. kenti, Platygyra daedalea, Pocillopora acuta, and Porites lutea) we were able to obtain information on bacterial communities with little noise from non-viable microbial DNA. Metabarcoding of the 16S rRNA gene showed significantly higher community evenness (85%) and species diversity (31%) in untreated compared with PMA-treated tissue for A. loripes only. While PMA-treated coral did not differ significantly from untreated samples in terms of observed number of ASVs, > 30% of ASVs were identified in untreated samples only, suggesting that they originated from cell-free/non-viable DNA. Further, the bacterial community structure was significantly different between PMA-treated and untreated samples for A. loripes and P. acuta indicating that DNA from non-viable microbes can bias community composition data in coral species with low bacterial diversity.
    CONCLUSIONS: Our study is highly relevant to microbiome studies on coral and other host organisms as it delivers a solution to excluding non-viable DNA in a complex community. These results provide novel insights into the dynamic nature of host-associated microbiomes and underline the importance of applying versatile tools in the analysis of metabarcoding or next-generation sequencing data sets.
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