Molecular testing

分子检测
  • 文章类型: Case Reports
    目的:报告第一例被诊断为Kleefstra综合征的巴西儿童,为该综合征提供可能的表型扩展,并提高医生对这种罕见疾病的认识。
    结果:评估了7例确诊KS的患者,其中男性5人,女性2人。在4例患者中观察到异常的产前发现。大多数病人是足月出生的,正常出生测量。所有患者均有神经发育迟缓,6例出现智力障碍。57.1%的患者存在听力损失,28.7%的患者患有先天性心脏病。在男性中,75%存在隐睾。尽管面部畸形,7例患者中只有2例有KS的试验前临床怀疑.一位特定的患者出现了半规管的双侧发育不全,Kleefstra综合征中非常罕见的耳朵表现,代表该综合征可能的表型扩展。
    结论:本报告旨在提高医生在神经发育迟缓或先天性畸形背景下评估患者的意识。尤其是先天性心脏缺陷.我们还强调了该综合征可能的表型扩展,一个半圆形异常的病例,到目前为止还没有报道这种综合症。
    OBJECTIVE: to report the first case series of Brazilian children diagnosed with Kleefstra syndrome, present a possible phenotype expansion to the syndrome and to raise physicians\' awareness for this rare disease.
    RESULTS: seven patients with confirmed KS were evaluated, including 5 males and 2 females. Abnormal prenatal findings were observed in 4 patients. Most patients were born at term, with normal birth measurements. All patients had neurodevelopmental delay and 6 evolved with intellectual disability. Hearing loss was present in 57.1% of patients and 28.7% had congenital heart disease. In males, cryptorchidism was present in 75%. Despite the facial dysmorphisms, only 2 out of 7 patients had a pre-test clinical suspicion of KS. One specific patient presented bilateral agenesis of the semicircular canals, a very rare ear manifestation in Kleefstra syndrome, representing a possible phenotype expansion of the syndrome.
    CONCLUSIONS: this report aims to promote awareness among physicians evaluating patients in a context of neurodevelopmental delay or congenital malformations, especially congenital heart defects. We also highlight a possible phenotype expansion of the syndrome, with a case of semicircular anomaly, not reported in this syndrome so far.
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  • 文章类型: Journal Article
    淋巴结(LN)细针抽吸细胞学(FNAC)是淋巴结病的常见诊断程序。尽管LN-FNAC的素质和潜力,可能病理的数量和临床背景的多样性是一个挑战,需要根据新出现的临床要求和新技术不断升级程序.本研究概述了LN-FNAC对淋巴结病患者护理的当前和未来影响。
    Lymph node (LN) fine-needle aspiration cytology (FNAC) is a common diagnostic procedure for lymphadenopathies. Despite the qualities and potentialities of LN-FNAC, the number of possible pathologies and the variety of clinical contexts represent a challenge and require a continuous upgrading of the procedure according to the emerging clinical requests and new technologies. This study presents an overview of the current and future impact of LN-FNAC on the care of patients with lymphadenopathy.
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  • 文章类型: Journal Article
    肺的小活检通常通过许多方法获得,包括几个导致细胞学标本。因为肺癌通常被诊断为无法进行原发性切除术的阶段,至关重要的是,所有的诊断,预测性,和预后信息来自这样的小活检标本。随着可用诊断和预测标志物数量的增加,细胞病理学家必须熟悉标本采集的当前要求,处理,结果报告,以及分子和其他辅助测试,所有这些都在这里回顾。
    Small biopsies of lung are routinely obtained by many methods, including several that result in cytologic specimens. Because lung cancer is often diagnosed at a stage for which primary resection is not an option, it is critical that all diagnostic, predictive, and prognostic information be derived from such small biopsy specimens. As the number of available diagnostic and predictive markers expands, cytopathologists must familiarize themselves with current requirements for specimen acquisition, handling, results reporting, and molecular and other ancillary testing, all of which are reviewed here.
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  • 文章类型: Journal Article
    甲状腺细胞学是一个快速发展的领域,近年来取得了重大进展。其主要目标是准确诊断甲状腺结节,区分良性和恶性病变,当无法明确诊断时,对结节进行风险分层。甲状腺细胞学的当前景观包括使用细针抽吸术诊断甲状腺结节,分层报告系统,如贝塞斯达甲状腺细胞病理学报告系统。近年来,分子检测已成为一种可靠的术前诊断工具,可将患者分为不同的风险类别(低,中间,或高)具有不同的恶性肿瘤概率,并有助于指导患者治疗。
    Thyroid cytology is a rapidly evolving field that has seen significant advances in recent years. Its main goal is to accurately diagnose thyroid nodules, differentiate between benign and malignant lesions, and risk stratify nodules when a definitive diagnosis is not possible. The current landscape of thyroid cytology includes the use of fine-needle aspiration for the diagnosis of thyroid nodules with the use of uniform, tiered reporting systems such as the Bethesda System for Reporting Thyroid Cytopathology. In recent years, molecular testing has emerged as a reliable preoperative diagnostic tool that stratifies patients into different risk categories (low, intermediate, or high) with varying probabilities of malignancy and helps guide patient treatment.
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  • 文章类型: Journal Article
    细针抽吸是诊断/管理唾液腺病变的有效工具。过去几年评估唾液细胞病理学缺乏统一的诊断报告,导致解释性问题。2015年,一个国际细胞病理学家小组开发了一种基于证据的分层分类系统,用于报告唾液腺细针穿刺(FNA)标本。“米兰唾液腺细胞病理学报告系统”(MSRSGC)。目前的唾液细胞学前景以MSRSGC的日益普及及其诊断作用的评估为代表。未来景观的特点是辅助技术在诊断和预后方面的作用越来越大。
    Fine-needle aspiration represents a valid tool for the diagnosis/management of salivary gland lesions. The past years assessed the lack of uniform diagnostic reports for salivary cytopathology leading to interpretative issues. In 2015, an international group of cytopathologists developed an evidence-based tiered classification system for reporting salivary gland fine-needle aspiration (FNA) specimens, the \"Milan System for Reporting Salivary Gland Cytopathology\" (MSRSGC). The present landscape of salivary cytology is represented by the growing adoption of the MSRSGC and the assessment of its diagnostic role. The future landscape is characterized by the increasing role of ancillary techniques for diagnostic and prognostic purposes.
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  • 文章类型: Journal Article
    背景:可操作的驱动突变占NSCLC病例的40-50%,它们的识别明显影响治疗选择和结果。相反,不可操作的突变是目前尚未确定治疗意义的遗传改变.在共同发生的改变中,同时可操作的基因组改变的识别是一个罕见的事件,可能影响预后和治疗结果。方法:我们回顾性评估了一系列NSCLC中并发驱动基因改变的患病率和模式,以调查其与临床病理特征的关系。评估患者的预后,这些患者的肿瘤具有同时改变的目的基因,并探讨其潜在的治疗意义。结果:在1520例至少有一种基因改变的患者中,有26例发现了共同发生的驱动改变(1.7%)。在这些案例中,并发可操作基因改变的发生率为39%(占整个队列的0.7%).在复合可操作的基因突变中,EGFR是最常涉及的基因(70%)。最常见的关联是EGFR突变与ROS1重排。一线靶向治疗是具有复合可操作突变的患者的首选方法。观察到令人沮丧的中位PFS(6个月)。结论:基因组谱分析技术的进步促进了并发突变的鉴定。在并发可操作基因改变的患者中,整合的分子和临床数据应用于指导治疗决策,总是在疾病进展的时候考虑重新活检。
    Background: Actionable driver mutations account for 40-50% of NSCLC cases, and their identification clearly affects treatment choices and outcomes. Conversely, non-actionable mutations are genetic alterations that do not currently have established treatment implications. Among co-occurring alterations, the identification of concurrent actionable genomic alterations is a rare event, potentially impacting prognosis and treatment outcomes. Methods: We retrospectively evaluated the prevalence and patterns of concurrent driver genomic alterations in a large series of NSCLCs to investigate their association with clinicopathological characteristics, to assess the prognosis of patients whose tumor harbors concurrent alterations in the genes of interest and to explore their potential therapeutic implications. Results: Co-occurring driver alterations were identified in 26 out of 1520 patients with at least one gene alteration (1.7%). Within these cases, the incidence of concurrent actionable gene alterations was 39% (0.7% of the overall cohort). Among compound actionable gene mutations, EGFR was the most frequently involved gene (70%). The most frequent association was EGFR mutations with ROS1 rearrangement. Front-line targeted treatments were the preferred approach in patients with compound actionable mutations, with dismal median PFS observed (6 months). Conclusions: Advances in genomic profiling technologies are facilitating the identification of concurrent mutations. In patients with concurrent actionable gene alterations, integrated molecular and clinical data should be used to guide treatment decisions, always considering rebiopsy at the moment of disease progression.
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  • 文章类型: Journal Article
    本研究旨在比较自我们机构实施以来,反射分子检测在识别不确定甲状腺结节(ITN)中甲状腺恶性肿瘤方面的有效性。
    确定了2010年1月至2020年10月我们机构的所有ITN。计算出灵敏度,特异性,负预测值(NPV),自2016年3月开始对所有首次ITN进行通用反射测试以来,ThyroSeq的阳性预测值(PPV)。分析对诊断性手术频率的影响。
    研究组:2016年3月至2020年10月,378个ITN接受了ThyroSeq(318个BethesdaIII和60个BethesdaIV)。平均年龄52岁,35.9%男性,61.1%为女性。145例手术切除,总切除率为38.4%(III:32.7%;IV68%)。最终组织学:49例恶性,ITN的整体恶性率(ROM)为33.8%(III:31.7%;IV:39%)。ITN的ThyroSeq敏感性为84%(III为78.8%,IV93.8%)。ITN的ThyroSeqNPV为86%(III84%,IV93.3%)。ITN的ThyroSeq特异性为52%(III为50.7%,IV56%)。ITN的ThyroSeqPPV为47%(III为42.6%,IV57.7%)。对照组:2010年1月至2016年2月,有242个ITN(152个BethesdaIII,90贝塞斯达四世)。平均年龄52.6岁,25.8%男性,74.2%为女性。157例手术切除,总切除率为64.9%(III:57.2%;IV:77.8%)。最终组织学:32恶性,ITN的总体ROM为20.4%(III:27.6%;IV:11.4%)。
    在我们的机构中,ITN的通用Thyroseq(灵敏度为84%,NPV为86%)的启动显着降低了我们的诊断性肺切除术的百分比,切除率下降26.5%。
    UNASSIGNED: This study aimed to compare the effectiveness of reflex molecular testing at identifying thyroid malignancy in indeterminate thyroid nodules (ITNs) since its implementation at our institution.
    UNASSIGNED: Identified all ITNs at our institution from January 2010 to October 2020. Calculated the sensitivity, specificity, negative predictive value (NPV), and positive predictive value (PPV) of ThyroSeq since the initiation of universal reflex testing of all first-time ITNs beginning in March 2016. Analyze effect on frequency of diagnostic surgeries.
    UNASSIGNED: Study group: March 2016 to October 2020, 378 ITNs underwent ThyroSeq (318 Bethesda III and 60 Bethesda IV). Mean age 52 years, 35.9% male, 61.1% female. 145 surgically excised with overall resection rate of 38.4% (III: 32.7%; IV 68%). Final histology: 49 malignant with overall rate of malignancy (ROM) of ITNs at 33.8% (III: 31.7%; IV: 39%). ThyroSeq sensitivity for ITNs at 84% (III 78.8%, IV 93.8%). ThyroSeq NPV for ITNs at 86% (III 84%, IV 93.3%). ThyroSeq specificity for ITNs at 52% (III 50.7%, IV 56%). ThyroSeq PPV for ITNs at 47% (III 42.6%, IV 57.7%). Control group: From January 2010 to February 2016 there were 242 ITNs (152 Bethesda III, 90 Bethesda IV). Mean age 52.6 years, 25.8% male, 74.2% female. 157 cases were surgically excised, with an overall resection rate of 64.9% (III: 57.2%; IV: 77.8%). Final histology: 32 malignant, with overall ROM of ITNs at 20.4% (III: 27.6%; IV: 11.4%).
    UNASSIGNED: The initiation of universal Thyroseq (sensitivity 84% and NPV 86%) of ITNs at our institution has significantly decreased our percentage of diagnostic lobectomies, with a decreased resection rate of 26.5%.
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  • 文章类型: Journal Article
    背景:精准医学彻底改变了肿瘤学,提供更个性化的诊断,治疗,和监测癌症患者。在女性特异性肿瘤的背景下,如乳房,卵巢,子宫内膜,还有宫颈癌,适当的组织收集和处理对于获得组织至关重要,免疫组织化学(IHC),和分子数据来指导治疗决策。
    目的:为收集和处理肿瘤组织,为了提高组织病理学样本的质量,IHC,基因组,和分子分析。这些指南对于告知癌症治疗中的治疗决策至关重要。
    方法:指南是由知名专家组成的多学科小组在2013年6月12日至2024年2月12日期间制定的。最初,小组讨论了与开展针对女性肿瘤的精准医学研究有关的关键和有争议的主题。随后,在框架内确定了22个关键主题,并将其分配给小组。这些小组审查了相关文献并起草了初步建议。在此之后,协调员审查了这些建议,并获得一致批准。最后,小组进行了最后的调整,对证据的级别进行分类,并对建议进行排名。
    结论:手术样本的收集需要最低的质量标准,以使组织病理学,IHC,基因组,和分子分析。这些分析为指导治疗决策提供了重要数据,显着影响女性肿瘤患者的潜在生存率。
    BACKGROUND: Precision medicine has revolutionized oncology, providing more personalized diagnosis, treatment, and monitoring for patients with cancer. In the context of female-specific tumors, such as breast, ovarian, endometrial, and cervical cancer, proper tissue collection and handling are essential for obtaining tissue, immunohistochemical (IHC), and molecular data to guide therapeutic decisions.
    OBJECTIVE: To establish guidelines for the collection and handling of tumor tissue, to enhance the quality of samples for histopathological, IHC, genomic, and molecular analyses. These guidelines are fundamental in informing therapeutic decisions in cancer treatment.
    METHODS: The guidelines were developed by a multidisciplinary panel of renowned specialists between June 12, 2013 and February 12, 2024. Initially, the panel deliberated on critical and controversial topics related to conducting precision medicine studies focusing on female tumors. Subsequently, 22 pivotal topics were identified within the framework and assigned to groups. These groups reviewed relevant literature and drafted preliminary recommendations. Following this, the recommendations were reviewed by the coordinators and received unanimous approval. Finally, the groups made the final adjustments, classified the level of evidence, and ranked the recommendations.
    CONCLUSIONS: The collection of surgical samples requires minimum quality standards to enable histopathological, IHC, genomic, and molecular analyses. These analyses provide crucial data for informing therapeutic decisions, significantly impacting potential survival gains for patients with female tumors.
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  • 文章类型: Journal Article
    本研究旨在分析复旦大学上海癌症中心(FUSCC)的结直肠癌(CRC)患者的病理诊断实践和分子检测技术的变化如何影响临床结局。
    这项回顾性队列研究分析了2008年至2020年在FUSCC诊断的21,141例经病理证实的CRC病例。出于不同的分析目的,将患者分为五组:(1)2014年以来分组分析pT3和pT4分期分级标准的改变对患者生存的影响;(2)全直肠系膜切除术(TME)组,分析直肠系膜完整性评估是否对患者生存有影响;(3)肿瘤沉积(TD)(+)N0vs.TD(+)N1c组分析pN分期变化对TD阳性和区域淋巴结转移(LNM)阴性患者生存率的影响;(4)前2013年以来分组分析缺失错配修复检测过程中的变化对患者生存的影响;(5)未进行RAS/BRAF基因突变检测,分析这些检测对患者生存的影响。患者临床病理参数,包括诊断时的年龄,性别,肿瘤大小,location,分化,粘液亚型,TD,淋巴管浸润,神经周浸润,肿瘤深度,LNM和远处转移,和肿瘤淋巴结转移(TNM)分期,进行组间比较。采用对数秩(logrank)方法进行Kaplan-Meier分析,用于患者总生存期(OS)和无病生存期(DFS)分析。
    在病理报告中,有3个参数变化影响患者结局.首先,pT分期标准的改变导致pT3期与pT4期患者的比例从1:110.9变为1:0.26.与2014年之前收治的患者相比(n=4,754),自2014年以来,观察到pT3和pT4分期之间的预后存在显著差异(n=9,965).其次,自2016年以来,我们开始评估直肠系膜的完整性.因此,91.0%的低位直肠癌患者接受了TME(n=4,111)手术,与部分直肠系膜切除术相比,TME患者的OS明显更好(PME,n=409)。第三,自2017年以来,我们开始将TD(+)LNM(-)作为N1c。结果表明,N1c(n=127)而非N0(n=39)可以改善无LNM和远端转移的患者的预后。在分子测试中,关于错配修复(MMR)/微卫星不稳定性(MSI)状态和RAS/BRAF基因突变检测,分别。自2013年以来,MMR状态测试的标准化大大降低了MMR(dMMR)缺陷患者的比例(从32.5%降至7.4%)。自2013年以来接受MMR状态检测的患者(n=867)的预后明显优于2013年之前的患者(n=1,313)。此外,检测RAS/BRAF基因突变状态(n=5,041)导致更好的DFS而不是OS,I-III期患者(n=16,557)。
    在过去的几十年里,病理报告中元素的更新,以及针对MMR/MSI状态和RAS/BRAF基因突变的标准化测试的开发,显着改善了患者的预后。
    UNASSIGNED: This study aims to analyze how changes in pathological diagnosis practice and molecular detection technology have affected clinical outcomes for colorectal cancer (CRC) patients in Fudan University Shanghai Cancer Center (FUSCC).
    UNASSIGNED: This retrospective cohort study analyzed 21,141 pathologically confirmed CRC cases diagnosed at FUSCC from 2008 to 2020. Patients were divided into five groups for different analytical purposes: (1) the before vs. since 2014 groups to analyze the influence of the changes in the classification criteria of pT3 and pT4 staging on the survival of patients; (2) the partial vs. total mesorectal excision (TME) groups to analyze whether evaluation of completeness of the mesorectum have impact on the survival of patients; (3) the tumor deposit (TD)(+)N0 vs. TD(+)N1c groups to analyze the influence of the changes in the pN staging on the survival of patients with positive TD and negative regional lymph node metastasis (LNM); (4) the before vs. since 2013 groups to analyze the influence of the changes in the testing process of deficient mismatch repair on the survival of patients; and (5) the groups with vs. without RAS/BRAF gene mutation testing to analyze the influence of these testing on the survival of patients. Patients\' clinicopathological parameters, including age at diagnosis, sex, tumor size, location, differentiation, mucinous subtype, TD, lymphovascular invasion, perineural invasion, tumor depth, LNM and distant metastasis, and tumor-node-metastasis (TNM) stage, were compared between groups. Kaplan-Meier analysis with log rank method was performed for patients\' overall survival (OS) and disease-free survival (DFS) analyses.
    UNASSIGNED: In pathological reports, there were three parameter changes that impacted patient outcomes. Firstly, changes in the pT staging criteria led to a shift of the ratio of patients with stage pT3 to stage pT4 from 1: 110.9 to 1: 0.26. In comparison to patients admitted before 2014 (n = 4,754), a significant difference in prognosis between pT3 and pT4 stages was observed since 2014 (n = 9,965). Secondly, we began to evaluate the completeness of the mesorectum since 2016. As a result, 91.0% of patients with low rectal cancer underwent TME (n = 4,111) surgery, and patients with TME had significantly better OS compared with partial mesorectal excision (PME, n = 409). Thirdly, we began to stage TD (+) LNM (-) as N1c since 2017. The results showed that N1c (n = 127) but not N0 (n = 39) can improve the prognosis of patients without LNM and distal metastasis. In molecular testing, there have been three and five iterations of updates regarding mismatch repair (MMR)/microsatellite instability (MSI) status and RAS/BRAF gene mutation detection, respectively. The standardization of MMR status testing has sharply decreased the proportion of deficient MMR (dMMR) patients (from 32.5% to 7.4%) since 2013. The prognosis of patients underwent MMR status testing since 2013 (n = 867) were significantly better than patients before 2013 (n = 1,313). In addition, detection of RAS/BRAF gene mutation status (n = 5,041) resulted in better DFS but not OS, for patients with stage I-III disease (n = 16,557).
    UNASSIGNED: Over the past few decades, updates in elements in pathological reports, as well as the development of standardized tests for MMR/MSI status and RAS/BRAF gene mutations have significantly improved patient outcomes.
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  • 文章类型: Case Reports
    原发灶未知的癌症是侵袭性和罕见的恶性肿瘤,诊断和治疗复杂。在这里,我们提出了一个案例,病理学,分子生物学与特定肿瘤部位和多学科团队对这些复杂病例的重要性不匹配。
    一名70多岁、有强烈吸烟史的男子因怀疑转移性肺癌而接受了肺部肿块活检。免疫组织化学染色对应于肝细胞/胆管癌或生殖细胞肿瘤;然而,包括影像学和异色色素12pFISH在内的专门肝脏和睾丸研究均为阴性.此外,体细胞变异分析对任何恶性肿瘤或可靶向变异均无特异性.鉴于疾病的模式,危险因素,和患者病史,患者接受了肺腺癌治疗(卡铂,培美曲塞,和pembrolizumab)。病人呼吸困难有了很大的改善,体重增加,并能够重返工作岗位。
    本报告描述了一个病例,在该病例中,免疫组织化学和分子谱分析无法确定组织的起源,并强调了多学科团队在不延迟患者治疗的情况下进行诊断和指导治疗的重要性。这些诊断。
    UNASSIGNED: Cancers of unknown primary are aggressive and rare malignancies with a complex diagnosis and management. Here we present a case in which imaging, pathology, and molecular biology did not match for a specific tumor site and the importance of a multidisciplinary team for these complicated cases.
    UNASSIGNED: A man in his 70s with strong smoking history under workup for suspicion of metastatic lung cancer underwent lung mass biopsy. Immunohistochemical stains corresponded to hepatocellular/cholangiocarcinoma or germ cell tumor; however, dedicated liver and testicular studies including imaging and iscochrome 12p FISH were negative. Additionally, somatic variant profiling was not specific for any malignancy nor targetable variants. Given the pattern of disease, risk factors, and patient history, the patient received treatment for lung adenocarcinoma (carboplatin, pemetrexed, and pembrolizumab). The patient had a drastic improvement in dyspnea, weight gain, and was able to return to work.
    UNASSIGNED: This report describes a case in which immunohistochemistry and molecular profiling did not identify the tissue of origin and highlights the importance of a multidisciplinary team to reach a diagnosis and guide treatment without delaying patient care in patients with these diagnoses.
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