Molecular testing

分子检测
  • 文章类型: Journal Article
    BACKGROUND: Thyroid cytopathology cases with suspicious for malignancy (SFM) diagnosis often result in resection. However, molecular testing offers details that may provide additional insights. In this study, the molecular profiles of SFM cases from two institutions that routinely used ThyroSeq v3 (TSV3) were examined.
    METHODS: Following institutional review board approval, SFM thyroid cytopathology cases with TSV3 results were retrieved from the databases of two institutions. Molecular information including molecular-derived risk of malignancy (MDROM), cytologic-histologic correlation data, and other related parameters were calculated. Statistical comparisons were made with a p <.05 considered significant.
    RESULTS: The core data set comprised 114 SFM cases that passed TSV3 quality assurance. All TSV3 results were reported as positive or negative for genomic alterations and all except five cases provided a probability of malignancy estimate. The overall combined baseline MDROM of 75.7% (95% CI, 70.0-81.4) was comparable to the risk of malignancy (74%) published in the Bethesda System. There was a statistically significant difference between the combined MDROMs of resected and unresected cohorts (79.0% vs 58.6%; p = .0153). Interestingly, the MDROMs of the resected cohorts from the two institutions were statistically different (75.0% vs 85.3%; p = .020). Cytologic-histologic correlation revealed malignant outcome in 88.5% of resected cases.
    CONCLUSIONS: Molecular analyses of SFM cases demonstrated higher risk genomic alterations that were associated with histologically overt neoplasms, resulting in increased malignancy outcome compared to baseline. MDROM analysis revealed differences in the cytopathologic practice patterns regarding follicular-patterned neoplasms at the two institutions.
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  • 文章类型: Journal Article
    Ground breaking advances in medicine, driven in part by major technologic developments in molecular biology have led us to a new model for cancer care that has been termed personalized, or precision medicine. Precision medicine is a model for making medical decisions that employs an innovative clinical approach and advanced tumor testing methods that are tailored to understanding an individual patient\'s tumor biology and the molecular drivers of their disease. This medical model includes a combination of diagnostic testing and specific treatment options that can be offered to patients at presentation and in theory throughout the course of their disease as new mutations arise with the development of disease recurrence. Although the precision medicine model offers incredible potential to transform cancer care, these advances are only meaningful when they reach the correct patients. The evolving paradigm of precision medicine is changing the practice of pathology, and the pathology community needs to be mindful of these changes because every tissue specimen represents a patient\'s life, and those patients are depending on the pathology community to handle their tissue correctly. The diagnostic tests performed in the pathology laboratory for precision medicine are increasingly complex, and pathologists along with the entire laboratory and clinical communities need to take steps to ensure that the right diagnosis is given to the right patient to inform the right treatment options, at the right time, along every step of the continuum of care for cancer patients. While hormone receptors and human epidermal growth factor receptor 2 (HER2) overexpression and/or amplification have been the mainstay for risk-stratification, and treatment decision making in breast cancer since the early 2000\'s, the seminal work on gene expression by Perou and colleagues in the early 2000\'s opened the door for molecular testing in the prognostic and predictive assessment of breast cancer. Molecular testing is now part of the standard of care in the precision medicine model for breast cancer care. In this article, the reader will gain a better understanding of how the lack of standardization of pre-analytic factors has the potential to negatively impact the quality of the tissue specimen for downstream biomarker and molecular testing, which ultimately can negatively affect patient care. The reader will also gain insight into the current climate surrounding molecular testing in breast cancer.
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  • 文章类型: Case Reports
    The spectrum of clinical and radiographic presentations of lung adenocarcinoma is increasingly broad, including in the metastatic setting. Here, we report on a patient who initially presented with a mild chronic cough that remained stable over a decade, with serial CT scans showing gradual worsening of multifocal areas of consolidation and ground-glass opacities of the bilateral lungs. The patient was ultimately diagnosed with ROS1 rearranged lung adenocarcinoma and achieved a dramatic response with entrectinib. This case highlights the variable presentation of non-small cell lung cancer (NSCLC) and the importance of comprehensive molecular testing for newly diagnosed metastatic NSCLC.
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  • 文章类型: Journal Article
    Concepts in thyroid diagnostics are evolving. As cytopathologists, we benefit from understanding the changes taking place in cytopathology practice as well as intersecting areas that may have implications for us. In this review, we discuss recent changes to 1. Classification systems, 2. Ancillary molecular testing modalities, and 3. Key metrics that affect thyroid cytopathology. The recent World Health Organization, Bethesda Thyroid Cytopathology, and American Joint Committee on Cancer classification systems have aspects that are designed to harmonize the clinical, cytopathologic, histomorphologic, and molecular findings for improved communication and patient management. New terminologies such as thyroid follicular nodular disease and low-risk follicular cell-derived thyroid neoplasms are introduced to reflect the subtle biologic nuances involving benign non-neoplastic and low-grade neoplastic conditions. The Bethesda Thyroid Cytopathology System has simplified its terminology, updated risk of malignancy estimates, and expanded the discussions on molecular testing, clinical and imaging assessments, and pediatric cytopathology. There is now a single term for each of the 6 diagnostic categories. The American Joint Committee on Cancer has refined the staging criteria to provide improved stratification of patient prognostication. Molecular testing using next-generation technology now offers large panels of markers that are sensitive for detecting the wide range of thyroid neoplasms. These panels were developed in North America and whether other regions of the world will choose similar tests remain to be seen. Finally, metrics such as molecular-derived risk of malignancy and molecular risk group may be viewed as surrogates of resection information and used to complement diagnostics, management, and quality assurance.
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  • 文章类型: Journal Article
    近年来,甲状腺癌的发病率有所增加,这是由于一些诊断工具,如颈部超声和细针抽吸,正被越来越广泛地采用。最近,另一种可能在术前提供有关甲状腺肿瘤侵袭性的重要信息的方式,其预后,它的复发率是分子检测。我们回顾了有关术前分子检测在BethesdaV和BethesdaVI甲状腺结节患者中的作用及其对选择最佳治疗策略的影响的文献。一些分子突变和改变与甲状腺癌及其生物学行为有关,如BRAF-V600E,RET,和TERT启动子。尽管在许多研究中已经分析了术前分子检测对不确定结节(BethesdaIII和BethesdaIV)的价值,术前分子检测对BethesdaV和BethesdaVI甲状腺结节的影响在现有文献中没有充分描述.术前识别特定的分子突变,如BRAFV600E和TERT启动子突变,可能通过改变被诊断为更具侵袭性或耐碘亚型的甲状腺癌患者的手术方式和手术范围,为甲状腺癌患者提供更个性化的治疗.甲状腺癌的特点是多种基因突变和改变,因此,恶性结节的术前分子检测可能是外科医生非常有用的工具,使他们能够为每位患者决定最合适的手术方法。
    The incidence of thyroid cancer has increased over recent years due to the fact that several diagnostic tools, such as neck ultrasound and fine-needle aspiration, are being ever more widely adopted. Lately, another modality which might provide significant information preoperatively on the aggressiveness of a thyroid tumor, its prognosis, and its recurrence rate is molecular testing. We reviewed the literature with regard to the role of preoperative molecular testing in patients with Bethesda V and Bethesda VI thyroid nodules and its impact on choice of the optimal treatment strategy. Several molecular mutations and alterations are associated with thyroid cancer and its biological behavior, such as BRAF-V600E, RET, and TERT promoter. Although the value of preoperative molecular testing for indeterminate nodules (Bethesda III and Bethesda IV) have been analyzed in numerous studies, the impact of preoperative molecular testing on Bethesda V and Bethesda VI thyroid nodules is not adequately described in the current literature. The preoperative recognition of specific molecular mutations, such as BRAFV600E and TERT promoter mutation, might provide more individualized management for thyroid cancer patients by altering the surgical approach and the extent of surgery for patients diagnosed with a more aggressive or iodine-resistant subtype of thyroid cancer.Thyroid cancer is characterized by multiple genetic mutations and alterations and, as a result, preoperative molecular testing of malignant nodules could be a very useful tool for surgeons, enabling them to decide on the most appropriate surgical approach for each patient.
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  • 文章类型: Journal Article
    目的:不确定的甲状腺结节的处理仍然是一个正在进行辩论的话题,特别是关于恶性肿瘤的分化。体细胞突变分析提供了对肿瘤特征的重要见解。本研究旨在通过体细胞突变分析来辅助不确定结节的临床管理。
    方法:本研究包括20个不确定的甲状腺结节的抽吸样本。包含67个基因的下一代测序小组用于分子谱分析。将结果与手术材料的病理数据进行比较,这被认为是黄金标准。灵敏度,特异性,阳性预测值(PPV),并计算阴性预测值(NPV)。
    结果:六个基因的变异(NRAS,BRAF,TP53,TERT,PTEN,在20个样品中的10个中检测到PIK3CA)。我们在15个恶性结节中的10个(67%)中鉴定出9个一级或二级变异(NRAS,BRAF,TP53,TERT,PTEN,PIK3CA)和五个良性结节中的一个中的一个2级(PIK3CA)变体。研究表明,NPV为40%,90%的PPV,80%的特异性,灵敏度为60%。
    结论:基于检测到的分子标记,至少9例患者(45%)可以在不需要重复FNAB尝试的情况下得到正确治疗.这项研究强调了分子测试在不确定细胞学检查中处理结节的临床实用性。此外,这项研究强调了在确定基于DNA或RNA的基因检测方法时考虑患者年龄的重要性.最后,我们讨论了体细胞突变谱的意义及其对当前病理分类的影响。
    OBJECTIVE: The management of indeterminate thyroid nodules remains a topic of ongoing debate, particularly regarding the differentiation of malignancy. Somatic mutation analysis offers crucial insights into tumor characteristics. This study aimed to assist the clinical management of indeterminate nodules with somatic mutation analysis.
    METHODS: Aspiration samples from 20 indeterminate thyroid nodules were included in the study. A next-generation sequencing panel containing 67 genes was used for molecular profiling. The results were compared with pathology data from surgical material, which is considered the gold standard. Sensitivity, specificity, positive predictive value (PPV), and negative predictive value (NPV) were calculated.
    RESULTS: Variants in six genes (NRAS, BRAF, TP53, TERT, PTEN, PIK3CA) were detected in 10 out of 20 samples. We identified nine Tier 1 or 2 variants in 10 (67 %) out of 15 malignant nodules (NRAS, BRAF, TP53, TERT, PTEN, PIK3CA) and one Tier 2 (PIK3CA) variant in one out of five benign nodules. The study demonstrated an NPV of 40 %, a PPV of 90 %, a specificity of 80 %, and a sensitivity of 60 %.
    CONCLUSIONS: Based on the detected molecular markers, at least nine patients (45 %) could be managed correctly without needing a repeat FNAB attempt. This study underscores the clinical practicality of molecular tests in managing nodules with indeterminate cytology. Additionally, this study emphasizes the importance of considering the patient\'s age when determining the DNA- or RNA-based genetic testing method. Finally, we discussed the significance of the somatic mutation profile and its impact on the current pathological classification.
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  • 文章类型: Journal Article
    背景:射频消融(RFA)治疗不确定细胞学甲状腺结节的疗效研究较少。这项研究的目的是确定RFA在用BethesdaIII治疗结节中的疗效,这些结节已被分子分析为良性(BIII-MPN)。
    方法:我们纳入了因良性和BIII-MPN甲状腺结节而接受RFA的前瞻性登记患者。主要结果指标是体积减少率(VRR),症状评分(范围0-10),RFA后1、3、6和12个月的美容评分(范围0-3),以及并发症发生率。
    结果:共纳入192例患者中的258个结节(良性:174中238个;BIII-MPN:18中20个)。VRR中位数差异不明显,而两组患者的症状和美容评分改善情况相似.BIII-MPN甲状腺结节与较低的感染率和暂时性语音改变有关。
    结论:我们的初步研究结果表明,RFA可能是BIII-MPN甲状腺结节的可行治疗选择。然而,适当的将是重要的,以解决重要的风险的潜在遗漏的恶性肿瘤.
    BACKGROUND: The efficacy of radiofrequency ablation (RFA) in treating thyroid nodules with indeterminate cytology remains less studied. The objective of this study was to determine the efficacy of RFA in treating nodules with Bethesda III that have been molecularly profiled benign (BIII-MPN).
    METHODS: We included prospectively enrolled patients who underwent RFA for benign and BIII-MPN thyroid nodules. Primary outcome measures were volume reduction ratio (VRR), symptom score (range 0-10), and cosmetic score (range 0-3) at 1, 3, 6, and 12 months after RFA, as well as complication rates.
    RESULTS: A total of 258 nodules in 192 patients were included (benign: 238 in 174; BIII-MPN: 20 in 18). The median VRR differed insignificantly, whereas symptom and cosmetic score improvements were similar between two cohorts. BIII-MPN thyroid nodules were associated with lower rates of infection and temporary voice change.
    CONCLUSIONS: Our preliminary findings suggest that RFA may be a feasible management option for BIII-MPN thyroid nodules. However, appropriate will be important to address the important risk of potentially missed malignancies.
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  • 文章类型: Journal Article
    目的:不确定结节的最佳处理仍然是内分泌手术中一个有争议的领域。这项研究的目的是比较观察,分子检测,和立即进行甲状腺手术,用于治疗50至90岁患者的BethesdaClassesIII和IV级结节。
    方法:从2021年4月22日至2023年9月29日,使用使用TreeAgePro2023构建的马尔可夫模型进行了决策分析。根据文献综述数据选择模型变量和范围。
    方法:TreeAgePro。
    方法:进行了单向敏感性分析,以评估每个管理途径的年龄阈值,立即进行甲状腺手术,额外的分子测试,或观察,会受到青睐。对开始年龄为50、60、70、80和90岁的模型患者进行了5次蒙特卡罗概率敏感性分析,以评估诊断年龄如何影响模型结果。结果用质量调整后的生命年来衡量,并考虑围手术期并发症,包括永久性喉返神经损伤,永久性甲状旁腺功能减退,和医疗并发症。
    结果:在研究模型中,所有年龄段的分子检测比手术和观察更有益.作为下一个最佳选择,观察比手术更有益的年龄阈值为83.1岁。然而,3种治疗方法之间的临床差异相对较小.
    结论:关于不确定的甲状腺结节的决策是复杂的。鉴于所有3种治疗算法的临床结果相似,本研究强调,治疗方式应根据患者和医师共同决策进行个性化调整.
    OBJECTIVE: Optimal management of indeterminate nodules remains a controversial area of endocrine surgery. The purpose of this study is to compare observation, molecular testing, and immediate thyroid surgery for the management of Bethesda Classes III and IV nodules in patients age 50 to 90 years.
    METHODS: A decision analysis was performed from April 22, 2021, to September 29, 2023, using a Markov model constructed with TreeAgePro 2023. Model variables and ranges were selected based on literature review data.
    METHODS: TreeAgePro.
    METHODS: A 1-way sensitivity analysis was performed to evaluate the age threshold at which each management pathway, immediate thyroid surgery, additional molecular testing, or observation, would be favored. A Monte Carlo probabilistic sensitivity analysis was performed 5 times with model patients assigned starting ages of 50, 60, 70, 80, and 90 years to assess how age at diagnosis would impact model results. Outcomes were measured with quality-adjusted life-years and accounted for perioperative complications including permanent recurrent laryngeal nerve injury, permanent hypoparathyroidism, and medical complications.
    RESULTS: In the study models, molecular testing was more beneficial than surgery and observation across all ages. The age threshold at which observation became more beneficial than surgery as the next best option was 83.1 years. However, the clinical difference between all 3 treatment algorithms was relatively minimal.
    CONCLUSIONS: Decision-making regarding indeterminate thyroid nodules is complex. Given the clinically similar results across all 3 treatment algorithm, this study reinforces that treatment modalities should be individually tailored and based on shared physician-patient decision making.
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  • 文章类型: Journal Article
    淋巴结(LN)细针抽吸细胞学(FNAC)是淋巴结病的常见诊断程序。尽管LN-FNAC的素质和潜力,可能病理的数量和临床背景的多样性是一个挑战,需要根据新出现的临床要求和新技术不断升级程序.本研究概述了LN-FNAC对淋巴结病患者护理的当前和未来影响。
    Lymph node (LN) fine-needle aspiration cytology (FNAC) is a common diagnostic procedure for lymphadenopathies. Despite the qualities and potentialities of LN-FNAC, the number of possible pathologies and the variety of clinical contexts represent a challenge and require a continuous upgrading of the procedure according to the emerging clinical requests and new technologies. This study presents an overview of the current and future impact of LN-FNAC on the care of patients with lymphadenopathy.
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  • 文章类型: Journal Article
    肺的小活检通常通过许多方法获得,包括几个导致细胞学标本。因为肺癌通常被诊断为无法进行原发性切除术的阶段,至关重要的是,所有的诊断,预测性,和预后信息来自这样的小活检标本。随着可用诊断和预测标志物数量的增加,细胞病理学家必须熟悉标本采集的当前要求,处理,结果报告,以及分子和其他辅助测试,所有这些都在这里回顾。
    Small biopsies of lung are routinely obtained by many methods, including several that result in cytologic specimens. Because lung cancer is often diagnosed at a stage for which primary resection is not an option, it is critical that all diagnostic, predictive, and prognostic information be derived from such small biopsy specimens. As the number of available diagnostic and predictive markers expands, cytopathologists must familiarize themselves with current requirements for specimen acquisition, handling, results reporting, and molecular and other ancillary testing, all of which are reviewed here.
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