Molecular testing

分子检测
  • 文章类型: Case Reports
    上皮样血管内皮瘤(EHE)是一种极其罕见的血管肿瘤,这可能会造成诊断困境。它对女性的影响大于男性,主要存在于肝脏中,肺,还有骨头.迄今为止,没有已知的诱发因素。关于转移阶段EHE管理的数据有限。除早期放疗外,唯一防止转移扩散的最佳治疗方法是手术切除和截肢。这种罕见实体的肿瘤学家在这种疾病的指导和规范管理中起着重要作用,尤其是高级阶段。在这篇文章中,我们报道了一例74岁的患者,该患者因右小腿外侧肿胀并伴有疼痛和肢体完全功能损害而入院.诊断倾向于类似EHE的高风险血管肿瘤,通过骨(胫骨)和软组织活检证实。病人接受了分期检查,显示肝脏弥漫性转移,骨头,还有肺.本文的目的是倡导在这个实体中进行肿瘤干预,特别是在疾病的晚期。尽管它很罕见,临床试验和治疗建议的进展对于最佳治疗仍然至关重要.
    Epithelioid hemangioendothelioma (EHE) is an extremely rare vascular tumor, which can pose a diagnostic dilemma. It affects women more than men and is mainly found in the liver, lung, and bone. To date, there are no known predisposing factors. Limited data are available on the management of EHE at metastatic stages. The only optimal treatments to prevent metastatic dissemination are surgical resection and amputation in addition to radiotherapy at early stages. The oncologist in this rare entity plays an important role in the guided and standardized management of this disease, especially for advanced stages. In this article, we report the case of a 74-year-old patient admitted with swelling on the outer aspect of the right calf associated with pain and total functional impairment of the limb. The diagnosis favored a high-risk vascular tumor resembling EHE, confirmed by bone (tibia) and soft tissue biopsy. The patient underwent staging investigations, revealing diffuse metastases to the liver, bones, and lungs. The objective of this article is to advocate for oncological intervention in this entity, particularly in the advanced stages of the disease. Despite its rarity, the advancement of clinical trials and therapeutic recommendations remains crucial for optimal treatment.
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  • 文章类型: Case Reports
    在21世纪,非小细胞肺癌(NSCLC)的诊断和治疗发生了巨大变化,随着越来越多地使用微创组织采集方法。目前的治疗在所有情况下都需要形态学亚型和生物标志物信息。确定此类生物标志物是一个不断发展的领域;当前的指南指出,表皮生长因子(EFGR)突变的确定,Kirsten大鼠肉瘤病毒癌基因同源物(KRAS),原癌基因B-Raf(BRAF),人表皮生长因子受体2(HER2)和间变性淋巴瘤激酶(ALK),基因以及ROS原癌基因1,受体酪氨酸激酶(ROS1),MET原癌基因,受体酪氨酸激酶(MET),RET原癌基因(RET),神经营养性酪氨酸受体激酶(NTRK)家族是强制性的。在分析这种改变时,其中一些最初被报道是相互排斥的,虽然近年来,在其中一些情况下,情况并非如此。此外,NTRK融合蛋白的表达和EGFR突变也是如此.我们提供了一例伴随EGFR突变和NTRK1融合的患者的病例报告。
    In the 21st century, there has been a dramatic shift in the diagnosis and management of non-small cell lung carcinoma (NSCLC), with an increasing use of minimally invasive tissue acquisition methods. Current treatments require morphologic subtyping and biomarker information in all cases. Determining such biomarkers is a continuously evolving field; current guidelines state that the determination of mutations on the Epidermal Growth Factor (EFGR), Kirsten Rat Sarcoma viral oncogene homolog (KRAS), Proto-oncogene B-Raf (BRAF), Human epidermal growth factor receptor 2 (HER2) and Anaplastic Lymphoma Kinase (ALK), genes as well as fusions on genes such as ROS Proto-Oncogene 1, Receptor Tyrosine Kinase (ROS1), MET proto-oncogene, receptor tyrosine kinase (MET), RET proto-oncogene (RET), and the Neurotrophic Tyrosine Receptor Kinase (NTRK) family is mandatory. While analyzing such alterations, some of them were first reported to be mutually exclusive, although in recent years, it has been shown otherwise in some of these cases. Moreover, so was the case with the concomitant expression of NTRK fusions and EGFR mutations. We present a case report of a patient with concomitant EGFR mutation and NTRK1 fusion.
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  • 文章类型: Case Reports
    目的:抗-D通常具有免疫性,在缺乏D抗原或具有变体/改变的D表型的个体中形成。在印度人口中,93.8%为RhD阳性,R1是最常见的Rh表型。在这里,我们报告了RhD阳性3个月大的婴儿中罕见且有趣的自身免疫性抗D病例,导致温暖的自身免疫性溶血性贫血。
    方法:通过直接抗球蛋白试验等免疫血液学技术进行血清学检测,抗体检测和鉴定,二硫苏糖醇,酶处理,抗体滴定和洗脱。进行分子研究以排除RhD的遗传变异。
    结果:洗脱液中证实抗D,洗脱后血型为BRhD阳性。在使用印度特异性RHD基因分型测定法进行基因分型时,发现该样本对RHD*01W.150(印第安人中最常见的RhD变异体)呈阴性,但对RHD外显子5和RHD外显子10以及甘油醛-3-磷酸脱氢酶(GAPDH)呈阳性.通过Sanger测序进一步对样品进行RHD外显子1-10测序,发现为野生型,因此,排除了RhD变种的存在.
    结论:由于在如此年轻(3个月)的RhD阳性患者中罕见发生自身免疫性抗D,因此该病例引起了人们的兴趣。据我们所知,仅有2例关于婴儿期自身免疫性抗D的病例报告发表(1961年和1964年).
    OBJECTIVE: Anti-D is usually immune in nature and is formed in individuals lacking D antigen or having variants/altered D phenotypes. In the Indian population, 93.8% are RhD positive, and R1 R1 is the commonest Rh phenotype. Here we report a rare and interesting case of autoimmune anti-D in an RhD-positive 3-month-old infant leading to warm autoimmune haemolytic anaemia.
    METHODS: Auto-anti-D was detected serologically by immunohaematological techniques such as direct antiglobulin test, antibody detection and identification, dithiothreitol, enzyme treatment, antibody titration and elution. Molecular studies were performed to rule out genetic variants of RhD.
    RESULTS: Anti-D was confirmed in eluate and blood group post elution was B RhD positive. On genotyping using the Indian-specific RHD genotyping assay, the sample was found to be negative for the RHD*01W.150 (most common RhD variant in Indians) but positive for RHD exon 5 and RHD exon 10 along with glyceraldehyde-3-phosphate dehydrogenase (GAPDH). The sample was further sequenced for RHD exons 1-10 by Sanger sequencing and found to be a wild type, thus, ruling out the presence of an RhD variant.
    CONCLUSIONS: This case is of interest because of the rare occurrence of autoimmune anti-D in an RhD-positive patient of such a young age (3 months). To the best of our knowledge, only two case reports have been published on autoimmune anti-D in infancy (in 1961 and 1964).
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  • 文章类型: Case Reports
    三阴性乳腺癌(TNBC)约占所有乳腺癌的15%,通常以侵袭性临床行为和不良预后为特征。先前已经定义了四个具有不同分子谱的TNBC亚群:(i)腔雄激素受体(LAR),(ii)间充质(MES),(iii)基底样免疫抑制(BLIS)和(iv)基底样免疫活化(BLIA)。其中,LAR的特征是雄激素受体(AR)的表达,并表现出类似于管腔乳腺癌的基因组特征,预后和临床行为仍未确定。这里,我们报告了一例女性反复发作的LARTNBC,在整个自然史上经历了表型变化。在LAR乳腺癌的初步诊断后,患者出现局部复发,雌激素受体表达强烈.由于这一发现,她开始用CDK4/6抑制剂和芳香化酶抑制剂治疗,然后口服长春瑞滨,两者都有令人沮丧的结果。然后,她接受了依维莫司和依西美坦,这决定了暂时的疾病稳定。肿瘤组织的广泛NGS分析显示PIK3CA和HER2突变。我们的病例与LAR乳腺癌的先前报道一致,并强调了重新活检和分子检测在乳腺癌(BC)中的潜在效用,特别是在罕见的亚型。
    Triple-negative breast cancer (TNBC) represents about 15% of all breast cancers and is usually characterized by aggressive clinical behavior and a poor prognosis. Four TNBC subgroups have been previously defined with different molecular profiles: (i) luminal androgen receptor (LAR), (ii) mesenchymal (MES), (iii) basal-like immunosuppressed (BLIS) and (iv) basal-like immune-activated (BLIA). Among these, LAR is characterized by the expression of the androgen receptor (AR), and exhibits genomic characteristics that resemble luminal breast cancers, with a still undefined prognosis and clinical behavior. Here, we report a case of a woman affected by recurring LAR TNBC, which underwent phenotypic changes throughout its natural history. After the initial diagnosis of LAR breast cancer, the patient experienced local recurrence with strong expression of the estrogen receptor. Due to this finding, she started treatment with a CDK4/6-inhibitor and an aromatase inhibitor, followed by oral vinorelbine, both with dismal outcomes. Then, she received everolimus and exemestane, which determined temporary disease stabilization. An extensive NGS analysis of tumor tissue showed PIK3CA and HER2 mutations. Our case is consistent with previous reports of LAR breast cancer and underlines the potential utility of re-biopsy and molecular testing in breast cancer (BC), especially in rare subtypes.
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  • 文章类型: Case Reports
    CML的特征在于存在BCR-ABL1融合转录物。已经发布了一些用于其检测和分子监测的指南。这里,一个病例被描述为慢性髓细胞性白血病在爆炸期出现一个罕见的变异转录,讨论了其检测和基因检测中可能存在的危险信号,以及对患者临床特征的描述。该病例突出了使用实时定量逆转录聚合酶链反应(RQ-PCR)诊断CML的陷阱,尤其是当临床表现和检查结果不一致时。
    CML is characterized by the presence of a BCR-ABL1 fusion transcript. Several guidelines have been published for its detection and molecular monitoring. Here, a case is described of chronic myeloid leukemia presenting in the blast phase with a rare variant transcript, with a discussion on possible red flags in its detection and genetic testing and description of the patient\'s clinical characteristics. This case highlights the pitfalls of using real-time quantitative reverse-transcription polymerase chain reaction (RQ-PCR) for diagnosis of CML, especially when the clinical picture and the test results are discordant.
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  • 文章类型: Journal Article
    背景:这项研究的目的是进行交叉检查,并在必要时,根据比利时癌症登记处(BCR)提供的神经胶质瘤患者病理报告中的发现,调整已登记的ICD-O-3地形图和形态学代码.此外,研究了分子标志物在病理诊断中的整合以及与WHO2016分类的一致性。
    方法:由于有关分子测试和相应结论的信息不能作为人口水平的结构化数据获得,我们对已注册的神经胶质瘤患者(2017-2019年)进行了BCR提供的所有假名病理报告的人工筛查.来自BCR数据库的ICD-O-3形态学和地形代码(基于医院肿瘤护理计划和病理学实验室提供的信息),were,在肿瘤水平,与病理报告的数据交叉核对,如果需要,指定或更正。相关分子标记(IDH-1/2,1p19q共缺失,从病理报告中手动提取MGMTp)。
    结果:在95,3%的神经胶质瘤中,ICD-O-3形态编码正确.在9.3%中指定了非特定地形代码,而3.3%的特定代码被纠正。在75,2%的星形细胞肿瘤中已知IDH状态。在不同的神经胶质瘤中,正确的综合诊断率从47,6%到56,4%不等。MGMTp甲基化状态在32,2%的胶质母细胞瘤中可用。
    结论:病理报告结论中分子标记的整合以及这些报告向BCR的传递都可以得到改善。WHO分类中每个分子定义的肿瘤实体的不同ICD-O-3编码的可用性将增加癌症登记的一致性。促进人口水平研究和国际基准。
    BACKGROUND: The objective of this study was to cross-check and, if necessary, adjust registered ICD-O-3 topography and morphology codes with the findings in pathology reports available at the Belgian Cancer Registry (BCR) for glioma patients. Additionally, integration of molecular markers in the pathological diagnosis and concordance with WHO 2016 classification is investigated.
    METHODS: Since information regarding molecular tests and corresponding conclusions are not available as structured data at population level, a manual screening of all pseudonymized pathology reports available at the BCR for registered glioma patients (2017-2019) was conducted. ICD-O-3 morphology and topography codes from the BCR database (based on information as provided by hospital oncological care programmes and pathology laboratories), were, at tumour level, cross-checked with the data from the pathology reports and, if needed, specified or corrected. Relevant molecular markers (IDH1/2, 1p19q codeletion, promoter region of the MGMT gene [MGMTp]) were manually extracted from the pathology reports.
    RESULTS: In 95.3% of gliomas, the ICD-O-3 morphology code was correct. Non-specific topography codes were specified in 9.3%, while 3.3% of specific codes were corrected. The IDH status was known in 75.2% of astrocytic tumours. The rate of correct integrated diagnoses varied from 47.6% to 56.4% among different gliomas. MGMTp methylation status was available in 32.2% of glioblastomas.
    CONCLUSIONS: Both the integration of molecular markers in the conclusion of the pathology reports and the delivery of those reports to the BCR can be improved. The availability of distinct ICD-O-3 codes for each molecularly defined tumour entity within the WHO classification would increase the consistency of cancer registration, facilitate population level research and international benchmarking.
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  • 文章类型: Journal Article
    胎儿Nuchal液集合可以表现出两种不同的表现,这归因于相同的表型谱:增加的颈部半透明(iNT)和囊性水瘤。这些发现的产前检测应该通过遗传咨询和检测来促进准确的评估,包括核型,染色体微阵列分析(CMA)和多基因放射病组。我们对文献和荟萃分析进行了系统回顾,计算患有iNT和囊性水瘤的胎儿的基因检测诊断产量。我们将结果与一组96例胎儿和这些孤立发现进行了比较。孤立NT≥2.5mm的胎儿在22.76%的病例中出现核型异常,CMA的检出率为2.35%。分离的NT≥3mm的胎儿在14.36%的病例中表现出非整倍体,CMA的检出率为3.89%。当分离的NT测量至少3.5mm时,核型分析的诊断产率为34.35%,增量CMA检出率为4.1%,RASopathy面板的增量诊断率为1.44%,外显子组测序的增量诊断率为2.44%.有趣的是,CMA在NT≥3.5mm的胎儿组中具有可观的诊断率。同样,外显子组测序似乎显示出有希望的结果,可以在CMA结果阴性后考虑。
    Fetal Nuchal fluid collections can manifest with two distinct presentations attributable to the same phenotypic spectrum: increased nuchal translucency (iNT) and cystic hygroma. The prenatal detection of these findings should prompt an accurate assessment through genetic counseling and testing, including karyotype, chromosomal microarray analysis (CMA) and multigene RASopathy panel. We performed a systematic review of the literature and meta-analysis, to calculate diagnostic yields of genetic testing in fetuses with iNT and cystic hygroma. We compared the results with a cohort of 96 fetuses with these isolated findings. Fetuses with isolated NT ≥ 2.5 mm showed karyotype anomalies in 22.76% of cases and CMA presented an incremental detection rate of 2.35%. Fetuses with isolated NT ≥ 3 mm presented aneuploidies in 14.36% of cases and CMA had an incremental detection rate of 3.89%. When the isolated NT measured at least 3.5 mm the diagnostic yield of karyotyping was 34.35%, the incremental CMA detection rate was 4.1%, the incremental diagnostic rate of the RASopathy panel was 1.44% and it was 2.44% for exome sequencing. Interestingly, CMA presents a considerable diagnostic yield in the group of fetuses with NT ≥ 3.5 mm. Similarly, exome sequencing appears to show promising results and could be considered after a negative CMA result.
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  • 文章类型: Case Reports
    NTRK基因融合是罕见的致癌驱动突变,可在广泛的肿瘤中发现。在分泌性癌(SC)中,ETV6-NTRK3基因融合见于大多数病例中,在缺乏目前公认的护理标准的情况下,它代表了晚期疾病患者的可药用靶标。在我们的案例中,我们描述了一个反复发作的病人,转移性SC用一线恩替尼治疗,具有临床意义,49个月后持续持续的反应。患者经历了1级疲劳,熟食症,皮肤敏感,关节痛,血清肌酐升高,和体重增加以及2级低血压,在剂量减少后缓解。Entrectinib是一种耐受性良好的治疗方法,具有持久的反应潜力,并且在没有可接受的替代治疗选择的情况下,应将TRK抑制视为SC和其他NTRK基因融合阳性晚期肿瘤的标准治疗方法。
    NTRK gene fusions are rare oncogenic driver mutations that can be found in a broad range of neoplasms. In secretory carcinoma (SC), ETV6-NTRK3 gene fusion is seen in a majority of the cases and represents a druggable target for patients with advanced disease in the absence of a currently accepted standard of care. In our case, we describe a patient with recurrent, metastatic SC treated with first line entrectinib with clinically meaningful, durable ongoing response after 49 months. The patient experienced grade 1 fatigue, dysgeusia, skin sensitivity, arthralgias, an increase in serum creatinine, and weight-gain as well as grade 2 hypotension which resolved after a dose reduction. Entrectinib is a well-tolerated treatment with the potential for durable responses and TRK inhibition should be considered the standard of care in SC and other NTRK gene fusion-positive advanced neoplasms without acceptable alternative treatment options.
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  • 文章类型: Journal Article
    背景:乳腺小细胞癌是一种罕见的疾病,很少有研究概述分子靶标或最佳治疗管理。我们总结了一名年轻女性患者,患有神经内分泌特征/小细胞癌的低分化高级别癌。病例介绍:一名31岁女性,左侧乳房肿块较大。最初的活检显示小细胞,三阴性乳腺癌.治疗包括顺铂和依托泊苷,但耐受性差,在一个周期后停止。abraxane/atezolizumab的组合导致肿瘤大小的短暂部分反应,具有7个月的无进展稳定性。在放射学研究中初次活检后8个月发现转移性疾病恶化,患者在初次活检后10个月死亡。结论:证实了对abraxane/atezolizumab组合的短暂益处。
    免疫疗法是癌症研究中的新兴领域,它利用人体的免疫系统来靶向癌细胞。这为肿瘤学家提供了标准化疗方案的有效替代方案,往往有明显的副作用。此外,目前正在研究预测免疫疗法反应的生物标志物,包括PD-L1阳性。该患者患有一种罕见的侵袭性乳腺癌,以前几乎没有治疗选择。本报告展示了生物标志物评估(PD-L1)在预测免疫治疗反应中的应用。患者对免疫疗法反应良好,和放射学扫描显示肿瘤减少。对这一领域的进一步研究对改善治疗有意义,减少化疗的副作用,改善许多癌症患者的预后。
    Background: Small-cell carcinoma of the breast is a rare disease with little research outlining molecular targets or optimal therapeutic management. We summarize a young female patient with poorly differentiated high-grade carcinoma with neuroendocrine features/small-cell carcinoma. Case presentation: A 31-year-old female presented with a large left breast mass. Initial biopsy revealed small-cell, triple-negative breast carcinoma. Treatment consisted of cisplatin and etoposide but was poorly tolerated and discontinued after one cycle. Combination abraxane/atezolizumab resulted in transient partial response in tumor size with 7 months of progression-free stability. Worsening metastatic disease was found 8 months after initial biopsy on radiologic studies and the patient expired 10 months after initial biopsy. Conclusion: Transient benefit in response to combination abraxane/atezolizumab was demonstrated.
    Immunotherapy is an emerging area in cancer research which utilizes the body\'s immune system to target cancerous cells. This offers oncologists an effective alternative to standard chemotherapy options, which often have significant side effects. Additionally, biomarkers including PD-L1 positivity to predict response to immunotherapy are currently under investigation. The patient presented with a rare type of aggressive breast cancer that previously had few treatment options. This report demonstrates the use of biomarker assessment (PD-L1) to predict immunotherapy response. The patient responded well to immunotherapy, and radiologic scans demonstrated tumor reduction. Further research into this field has the implication to improve treatments, decrease side effects of chemotherapy and improve patient outcomes for many cancers.
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  • 文章类型: Case Reports
    全面的下一代测序面板正在导致罕见基因融合事件的检测。EFGR-RAD51融合是罕见的致癌发现,治疗这种疾病的临床数据很少。我们报告了一名从不吸烟的年轻男性患者的广泛转移性非小细胞肺癌,对奥希替尼具有持续的接近完全的全身和颅内反应,第三代EGFR酪氨酸激酶抑制剂(TKI).我们还回顾了在这种情况下其他TKIs的可用数据,并强调了全面分子检测在NSCLC中的作用。
    Comprehensive next-generation sequencing panels are leading to detection of rare gene fusion events. EFGR-RAD51 fusion is a rare oncogenic finding and clinical data for management of this condition is scarce. We report a widely metastatic non-small cell lung cancer in a never-smoker young male patient with sustained near-complete systemic and intracranial response to osimertinib, a third-generation EGFR tyrosine-kinase inhibitor (TKI). We also review the available data of other TKIs in this scenario and underscore the role of comprehensive molecular testing for NSCLC.
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